Class imbalance would lead to biased classifiers that favor the majority class and disadvantage the minority class. Unfortunately, from a practical perspective, the minority class is of importance in many real-life applications. Hybrid sampling methods address this by oversampling the minority class to increase the number of its instances, followed by undersampling to remove low-quality instances. However, most existing sampling methods face difficulties in generating diverse high-quality instances and often fail to remove noise or low-quality instances on a larger scale effectively. This paper therefore proposes an evolutionary multi-granularity hybrid sampling method, called EvoSampling. During the oversampling process, genetic programming (GP) is used with multi-task learning to effectively and efficiently generate diverse high-quality instances. During the undersampling process, we develop a granular ball-based undersampling method that removes noise in a multi-granular fashion, thereby enhancing data quality. Experiments on 20 imbalanced datasets demonstrate that EvoSampling effectively enhances the performance of various classification algorithms by providing better datasets than existing sampling methods. Besides, ablation studies further indicate that allowing knowledge transfer accelerates the GP's evolutionary learning process.

Many important datasets contain samples that are missing one or more feature values. Maintaining the interpretability of machine learning models in the presence of such missing data is challenging. Singly or multiply imputing missing values complicates the model's mapping from features to labels. On the other hand, reasoning on indicator variables that represent missingness introduces a potentially large number of additional terms, sacrificing sparsity. We solve these problems with M-GAM, a sparse, generalized, additive modeling approach that incorporates missingness indicators and their interaction terms while maintaining sparsity through l0 regularization. We show that M-GAM provides similar or superior accuracy to prior methods while significantly improving sparsity relative to either imputation or naive inclusion of indicator variables.

Recent latent-space monitoring techniques have shown promise as defenses against LLM attacks. These defenses act as scanners that seek to detect harmful activations before they lead to undesirable actions. This prompts the question: Can models execute harmful behavior via inconspicuous latent states? Here, we study such obfuscated activations. We show that state-of-the-art latent-space defenses -- including sparse autoencoders, representation probing, and latent OOD detection -- are all vulnerable to obfuscated activations. For example, against probes trained to classify harmfulness, our attacks can often reduce recall from 100% to 0% while retaining a 90% jailbreaking rate. However, obfuscation has limits: we find that on a complex task (writing SQL code), obfuscation reduces model performance. Together, our results demonstrate that neural activations are highly malleable: we can reshape activation patterns in a variety of ways, often while preserving a network's behavior. This poses a fundamental challenge to latent-space defenses.

Cryo-electron microscopy (cryo-EM) is an experimental technique for protein structure determination that images an ensemble of macromolecules in near-physiological contexts. While recent advances enable the reconstruction of dynamic conformations of a single biomolecular complex, current methods do not adequately model samples with mixed conformational and compositional heterogeneity. In particular, datasets containing mixtures of multiple proteins require the joint inference of structure, pose, compositional class, and conformational states for 3D reconstruction. Here, we present Hydra, an approach that models both conformational and compositional heterogeneity fully ab initio by parameterizing structures as arising from one of K neural fields. We employ a new likelihood-based loss function and demonstrate the effectiveness of our approach on synthetic datasets composed of mixtures of proteins with large degrees of conformational variability. We additionally demonstrate Hydra on an experimental dataset of a cellular lysate containing a mixture of different protein complexes. Hydra expands the expressivity of heterogeneous reconstruction methods and thus broadens the scope of cryo-EM to increasingly complex samples.

An interpretable machine learning (ML) framework is introduced to enhance the diagnosis of Mild Cognitive Impairment (MCI) and Alzheimer's disease (AD) by ensuring robustness of the ML models' interpretations. The dataset used comprises volumetric measurements from brain MRI and genetic data from healthy individuals and patients with MCI/AD, obtained through the Alzheimer's Disease Neuroimaging Initiative. The existing class imbalance is addressed by an ensemble learning approach, while various attribution-based and counterfactual-based interpretability methods are leveraged towards producing diverse explanations related to the pathophysiology of MCI/AD. A unification method combining SHAP with counterfactual explanations assesses the interpretability techniques' robustness. The best performing model yielded 87.5% balanced accuracy and 90.8% F1-score. The attribution-based interpretability methods highlighted significant volumetric and genetic features related to MCI/AD risk. The unification method provided useful insights regarding those features' necessity and sufficiency, further showcasing their significance in MCI/AD diagnosis.

Motor imagery (MI) based brain-computer interfaces (BCIs) enable the direct control of external devices through the imagined movements of various body parts. Unlike previous systems that used fixed-length EEG trials for MI decoding, asynchronous BCIs aim to detect the user's MI without explicit triggers. They are challenging to implement, because the algorithm needs to first distinguish between resting-states and MI trials, and then classify the MI trials into the correct task, all without any triggers. This paper proposes a sliding window prescreening and classification (SWPC) approach for MI-based asynchronous BCIs, which consists of two modules: a prescreening module to screen MI trials out of the resting-state, and a classification module for MI classification. Both modules are trained with supervised learning followed by self-supervised learning, which refines the feature extractors. Within-subject and cross-subject asynchronous MI classifications on four different EEG datasets validated the effectiveness of SWPC, i.e., it always achieved the highest average classification accuracy, and outperformed the best state-of-the-art baseline on each dataset by about 2%.

Coupled tensor decompositions (CTDs) perform data fusion by linking factors from different datasets. Although many CTDs have been already proposed, current works do not address important challenges of data fusion, where: 1) the datasets are often heterogeneous, constituting different "views" of a given phenomena (multimodality); and 2) each dataset can contain personalized or dataset-specific information, constituting distinct factors that are not coupled with other datasets. In this work, we introduce a personalized CTD framework tackling these challenges. A flexible model is proposed where each dataset is represented as the sum of two components, one related to a common tensor through a multilinear measurement model, and another specific to each dataset. Both the common and distinct components are assumed to admit a polyadic decomposition. This generalizes several existing CTD models. We provide conditions for specific and generic uniqueness of the decomposition that are easy to interpret. These conditions employ uni-mode uniqueness of different individual datasets and properties of the measurement model. Two algorithms are proposed to compute the common and distinct components: a semi-algebraic one and a coordinate-descent optimization method. Experimental results illustrate the advantage of the proposed framework compared with the state of the art approaches.

Named-entity recognition (NER) is a task that typically requires large annotated datasets, which limits its applicability across domains with varying entity definitions. This paper addresses few-shot NER, aiming to transfer knowledge to new domains with minimal supervision. Unlike previous approaches that rely solely on limited annotated data, we propose a weakly supervised algorithm that combines small labeled datasets with large amounts of unlabeled data. Our method extends the k-means algorithm with label supervision, cluster size constraints and domain-specific discriminative subspace selection. This unified framework achieves state-of-the-art results in few-shot NER on several English datasets.

Recent advances in machine learning have highlighted Federated Learning (FL) as a promising approach that enables multiple distributed users (so-called clients) to collectively train ML models without sharing their private data. While this privacy-preserving method shows potential, it struggles when data across clients is not independent and identically distributed (non-IID) data. The latter remains an unsolved challenge that can result in poorer model performance and slower training times. Despite the significance of non-IID data in FL, there is a lack of consensus among researchers about its classification and quantification. This technical survey aims to fill that gap by providing a detailed taxonomy for non-IID data, partition protocols, and metrics to quantify data heterogeneity. Additionally, we describe popular solutions to address non-IID data and standardized frameworks employed in FL with heterogeneous data. Based on our state-of-the-art survey, we present key lessons learned and suggest promising future research directions.

Federated Learning (FL) is an emerging paradigm that enables intelligent agents to collaboratively train Machine Learning (ML) models in a distributed manner, eliminating the need for sharing their local data. The recent work (arXiv:2106.02969) introduces a family of Federated Newton Learn (FedNL) algorithms, marking a significant step towards applying second-order methods to FL and large-scale optimization. However, the reference FedNL prototype exhibits three serious practical drawbacks: (i) It requires 4.8 hours to launch a single experiment in a sever-grade workstation; (ii) The prototype only simulates multi-node setting; (iii) Prototype integration into resource-constrained applications is challenging. To bridge the gap between theory and practice, we present a self-contained implementation of FedNL, FedNL-LS, FedNL-PP for single-node and multi-node settings. Our work resolves the aforementioned issues and reduces the wall clock time by x1000. With this FedNL outperforms alternatives for training logistic regression in a single-node -- CVXPY (arXiv:1603.00943), and in a multi-node -- Apache Spark (arXiv:1505.06807), Ray/Scikit-Learn (arXiv:1712.05889). Finally, we propose two practical-orientated compressors for FedNL - adaptive TopLEK and cache-aware RandSeqK, which fulfill the theory of FedNL.