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 Statistical Learning


Mathematical Theory of Collinearity Effects on Machine Learning Variable Importance Measures

arXiv.org Machine Learning

In many machine learning problems, understanding variable importance is a central concern. Two common approaches are Permute-and-Predict (PaP), which randomly permutes a feature in a validation set, and Leave-One-Covariate-Out (LOCO), which retrains models after permuting a training feature. Both methods deem a variable important if predictions with the original data substantially outperform those with permutations. In linear regression, empirical studies have linked PaP to regression coefficients and LOCO to $t$-statistics, but a formal theory has been lacking. We derive closed-form expressions for both measures, expressed using square-root transformations. PaP is shown to be proportional to the coefficient and predictor variability: $\text{PaP}_i = ฮฒ_i \sqrt{2\operatorname{Var}(\mathbf{x}^v_i)}$, while LOCO is proportional to the coefficient but dampened by collinearity (captured by $ฮ”$): $\text{LOCO}_i = ฮฒ_i (1 -ฮ”)\sqrt{1 + c}$. These derivations explain why PaP is largely unaffected by multicollinearity, whereas LOCO is highly sensitive to it. Monte Carlo simulations confirm these findings across varying levels of collinearity. Although derived for linear regression, we also show that these results provide reasonable approximations for models like Random Forests. Overall, this work establishes a theoretical basis for two widely used importance measures, helping analysts understand how they are affected by the true coefficients, dimension, and covariance structure. This work bridges empirical evidence and theory, enhancing the interpretability and application of variable importance measures.


Bayesian Neural Networks for Functional ANOVA model

arXiv.org Machine Learning

With the increasing demand for interpretability in machine learning, functional ANOVA decomposition has gained renewed attention as a principled tool for breaking down high-dimensional function into low-dimensional components that reveal the contributions of different variable groups. Recently, Tensor Product Neural Network (TPNN) has been developed and applied as basis functions in the functional ANOVA model, referred to as ANOVA-TPNN. A disadvantage of ANOVA-TPNN, however, is that the components to be estimated must be specified in advance, which makes it difficult to incorporate higher-order TPNNs into the functional ANOVA model due to computational and memory constraints. In this work, we propose Bayesian-TPNN, a Bayesian inference procedure for the functional ANOVA model with TPNN basis functions, enabling the detection of higher-order components with reduced computational cost compared to ANOVA-TPNN. We develop an efficient MCMC algorithm and demonstrate that Bayesian-TPNN performs well by analyzing multiple benchmark datasets. Theoretically, we prove that the posterior of Bayesian-TPNN is consistent.


Train on Validation (ToV): Fast data selection with applications to fine-tuning

arXiv.org Machine Learning

State-of-the-art machine learning often follows a two-stage process: $(i)$~pre-training on large, general-purpose datasets; $(ii)$~fine-tuning on task-specific data. In fine-tuning, selecting training examples that closely reflect the target distribution is crucial. However, it is often the case that only a few samples are available from the target distribution. Existing data selection methods treat these target samples as a validation set and estimate the effect of adding or removing a single sample from the training pool by performing inference on the validation set. We propose a simpler and faster alternative that inverts the usual role of train and validation: we perform inference on the training pool before and after fine-tuning on the validation set. We then select samples whose predictions change the most. Our key insight is that the training samples most affected by fine-tuning on a small validation set tend to be the most beneficial for reducing test loss on the target distribution. Experiments on instruction tuning and named entity recognition tasks show that, in most cases, our method achieves lower test log-loss than state-of-the-art approaches. We support our findings with theoretical analysis.


CINDES: Classification induced neural density estimator and simulator

arXiv.org Machine Learning

Neural network-based methods for (un)conditional density estimation have recently gained substantial attention, as various neural density estimators have outperformed classical approaches in real-data experiments. Despite these empirical successes, implementation can be challenging due to the need to ensure non-negativity and unit-mass constraints, and theoretical understanding remains limited. In particular, it is unclear whether such estimators can adaptively achieve faster convergence rates when the underlying density exhibits a low-dimensional structure. This paper addresses these gaps by proposing a structure-agnostic neural density estimator that is (i) straightforward to implement and (ii) provably adaptive, attaining faster rates when the true density admits a low-dimensional composition structure. Another key contribution of our work is to show that the proposed estimator integrates naturally into generative sampling pipelines, most notably score-based diffusion models, where it achieves provably faster convergence when the underlying density is structured. We validate its performance through extensive simulations and a real-data application.


Approximately Unimodal Likelihood Models for Ordinal Regression

arXiv.org Machine Learning

Ordinal regression (OR, also called ordinal classification) is classification of ordinal data, in which the underlying target variable is categorical and considered to have a natural ordinal relation for the underlying explanatory variable. A key to successful OR models is to find a data structure `natural ordinal relation' common to many ordinal data and reflect that structure into the design of those models. A recent OR study found that many real-world ordinal data show a tendency that the conditional probability distribution (CPD) of the target variable given a value of the explanatory variable will often be unimodal. Several previous studies thus developed unimodal likelihood models, in which a predicted CPD is guaranteed to become unimodal. However, it was also observed experimentally that many real-world ordinal data partly have values of the explanatory variable where the underlying CPD will be non-unimodal, and hence unimodal likelihood models may suffer from a bias for such a CPD. Therefore, motivated to mitigate such a bias, we propose approximately unimodal likelihood models, which can represent up to a unimodal CPD and a CPD that is close to be unimodal. We also verify experimentally that a proposed model can be effective for statistical modeling of ordinal data and OR tasks.


Identifying All ฮต-Best Arms in (Misspecified) Linear Bandits

arXiv.org Machine Learning

Motivated by the need to efficiently identify multiple candidates in high trial-and-error cost tasks such as drug discovery, we propose a near-optimal algorithm to identify all ฮต-best arms (i.e., those at most ฮต worse than the optimum). Specifically, we introduce LinFACT, an algorithm designed to optimize the identification of all ฮต-best arms in linear bandits. We establish a novel information-theoretic lower bound on the sample complexity of this problem and demonstrate that LinFACT achieves instance optimality by matching this lower bound up to a logarithmic factor. A key ingredient of our proof is to integrate the lower bound directly into the scaling process for upper bound derivation, determining the termination round and thus the sample complexity. We also extend our analysis to settings with model misspecification and generalized linear models. Numerical experiments, including synthetic and real drug discovery data, demonstrate that LinFACT identifies more promising candidates with reduced sample complexity, offering significant computational efficiency and accelerating early-stage exploratory experiments.


Benchmarking Machine Learning Models for Fault Classification and Localization in Power System Protection

arXiv.org Artificial Intelligence

The increasing integration of distributed energy resources (DERs), particularly renewables, poses significant challenges for power system protection, with fault classification (FC) and fault localization (FL) being among the most critical tasks. Conventional protection schemes, based on fixed thresholds, cannot reliably identify and localize short circuits with the increasing complexity of the grid under dynamic conditions. Machine learning (ML) offers a promising alternative; however, systematic benchmarks across models and settings remain limited. This work presents, for the first time, a comparative benchmarking study of classical ML models for FC and FL in power system protection based on EMT data. Using voltage and current waveforms segmented into sliding windows of 10 ms to 50 ms, we evaluate models under realistic real-time constraints. Performance is assessed in terms of accuracy, robustness to window size, and runtime efficiency. The best-performing FC model achieved an F1 score of 0.992$\pm$0.001, while the top FL model reached an R2 of 0.806$\pm$0.008 with a mean processing time of 0.563 ms.


Eliciting Chain-of-Thought Reasoning for Time Series Analysis using Reinforcement Learning

arXiv.org Artificial Intelligence

Complex numerical time series analysis often demands multi-step reasoning capabilities beyond current models' reach. Tasks like medical diagnosis and weather forecasting require sequential reasoning processes -- including counterfactual analysis, logical deduction, knowledge application, and multi-modal contextual integration -- that existing time series models cannot explicitly perform. While recent research has shown large language models (LLMs) can achieve sophisticated Chain-of-Thought (CoT) reasoning through reinforcement learning (RL), these advances have primarily focused on mathematical and coding domains, with LLMs still demonstrating poor performance on time series tasks. We introduce Chain Of thought for Understanding Numerical Time Series (COUNTS), the first framework that trains LLMs to perform CoT reasoning across diverse time series tasks using RL with verifiable rewards. Our approach employs a Residual Vector-Quantized VAE to create high-fidelity discrete tokens that seamlessly integrate into a pre-trained LLM's vocabulary. COUNTS undergoes a two-stage training process: first, supervised fine-tuning on time series analysis tasks to master our novel representations, followed by Group Relative Policy Optimization training on verifiable problems using prompting strategies that encourage explicit reasoning steps before producing final answers. Our experiments demonstrate that this RL-driven approach with intermediate CoT reasoning significantly enhances LLM performance across various time series analysis tasks, opening new possibilities for complex temporal data reasoning.


UrbanGraph: Physics-Informed Spatio-Temporal Dynamic Heterogeneous Graphs for Urban Microclimate Prediction

arXiv.org Artificial Intelligence

With rapid urbanization, predicting urban microclimates has become critical, as it affects building energy demand and public health risks. However, existing generative and homogeneous graph approaches fall short in capturing physical consistency, spatial dependencies, and temporal variability. To address this, we introduce UrbanGraph, a physics-informed framework integrating heterogeneous and dynamic spatio-temporal graphs. It encodes key physical processes -- vegetation evapotranspiration, shading, and convective diffusion -- while modeling complex spatial dependencies among diverse urban entities and their temporal evolution. We evaluate UrbanGraph on UMC4/12, a physics-based simulation dataset covering diverse urban configurations and climates. Results show that UrbanGraph improves $R^2$ by up to 10.8% and reduces FLOPs by 17.0% over all baselines, with heterogeneous and dynamic graphs contributing 3.5% and 7.1% gains. Our dataset provides the first high-resolution benchmark for spatio-temporal microclimate modeling, and our method extends to broader urban heterogeneous dynamic computing tasks.


Can Mamba Learn In Context with Outliers? A Theoretical Generalization Analysis

arXiv.org Artificial Intelligence

The Mamba model has gained significant attention for its computational advantages over Transformer-based models, while achieving comparable performance across a wide range of language tasks. Like Transformers, Mamba exhibits in-context learning (ICL) capabilities, i.e., making predictions for new tasks based on a prompt containing input-label pairs and a query, without requiring fine-tuning. Despite its empirical success, the theoretical understanding of Mamba remains limited, largely due to the nonlinearity introduced by its gating mechanism. To the best of our knowledge, this paper presents the first theoretical analysis of the training dynamics of a one-layer Mamba model, which consists of a linear attention component followed by a nonlinear gating layer, and its ICL generalization on unseen binary classification tasks, even when the prompt includes additive outliers. Our analysis shows that Mamba leverages the linear attention layer to select informative context examples and uses the nonlinear gating layer to suppress the influence of outliers. By establishing and comparing to the analysis of linear Transformers under the same setting, we show that although Mamba may require more training iterations to converge, it maintains accurate predictions even when the proportion of outliers exceeds the threshold that a linear Transformer can tolerate. These theoretical findings are supported by empirical experiments.