Support Vector Machines
Utilizing Semantic Textual Similarity for Clinical Survey Data Feature Selection
Warner, Benjamin C., Xu, Ziqi, Haroutounian, Simon, Kannampallil, Thomas, Lu, Chenyang
Survey data can contain a high number of features while having a comparatively low quantity of examples. Machine learning models that attempt to predict outcomes from survey data under these conditions can overfit and result in poor generalizability. One remedy to this issue is feature selection, which attempts to select an optimal subset of features to learn upon. A relatively unexplored source of information in the feature selection process is the usage of textual names of features, which may be semantically indicative of which features are relevant to a target outcome. The relationships between feature names and target names can be evaluated using language models (LMs) to produce semantic textual similarity (STS) scores, which can then be used to select features. We examine the performance using STS to select features directly and in the minimal-redundancy-maximal-relevance (mRMR) algorithm. The performance of STS as a feature selection metric is evaluated against preliminary survey data collected as a part of a clinical study on persistent post-surgical pain (PPSP). The results suggest that features selected with STS can result in higher performance models compared to traditional feature selection algorithms.
Machine learning methods for the search for L&T brown dwarfs in the data of modern sky surveys
According to various estimates, brown dwarfs (BD) should account for up to 25 percent of all objects in the Galaxy. However, few of them are discovered and well-studied, both individually and as a population. Homogeneous and complete samples of brown dwarfs are needed for these kinds of studies. Due to their weakness, spectral studies of brown dwarfs are rather laborious. For this reason, creating a significant reliable sample of brown dwarfs, confirmed by spectroscopic observations, seems unattainable at the moment. Numerous attempts have been made to search for and create a set of brown dwarfs using their colours as a decision rule applied to a vast amount of survey data. In this work, we use machine learning methods such as Random Forest Classifier, XGBoost, SVM Classifier and TabNet on PanStarrs DR1, 2MASS and WISE data to distinguish L and T brown dwarfs from objects of other spectral and luminosity classes. The explanation of the models is discussed. We also compare our models with classical decision rules, proving their efficiency and relevance.
Severity Classification of Parkinson's Disease from Speech using Single Frequency Filtering-based Features
Kadiri, Sudarsana Reddy, Kodali, Manila, Alku, Paavo
Developing objective methods for assessing the severity of Parkinson's disease (PD) is crucial for improving the diagnosis and treatment. This study proposes two sets of novel features derived from the single frequency filtering (SFF) method: (1) SFF cepstral coefficients (SFFCC) and (2) MFCCs from the SFF (MFCC-SFF) for the severity classification of PD. Prior studies have demonstrated that SFF offers greater spectro-temporal resolution compared to the short-time Fourier transform. The study uses the PC-GITA database, which includes speech of PD patients and healthy controls produced in three speaking tasks (vowels, sentences, text reading). Experiments using the SVM classifier revealed that the proposed features outperformed the conventional MFCCs in all three speaking tasks. The proposed SFFCC and MFCC-SFF features gave a relative improvement of 5.8% and 2.3% for the vowel task, 7.0% & 1.8% for the sentence task, and 2.4% and 1.1% for the read text task, in comparison to MFCC features.
IoT Data Trust Evaluation via Machine Learning
Tadj, Timothy, Arablouei, Reza, Dedeoglu, Volkan
Various approaches based on supervised or unsupervised machine learning (ML) have been proposed for evaluating IoT data trust. However, assessing their real-world efficacy is hard mainly due to the lack of related publicly-available datasets that can be used for benchmarking. Since obtaining such datasets is challenging, we propose a data synthesis method, called random walk infilling (RWI), to augment IoT time-series datasets by synthesizing untrustworthy data from existing trustworthy data. Thus, RWI enables us to create labeled datasets that can be used to develop and validate ML models for IoT data trust evaluation. We also extract new features from IoT time-series sensor data that effectively capture its auto-correlation as well as its cross-correlation with the data of the neighboring (peer) sensors. These features can be used to learn ML models for recognizing the trustworthiness of IoT sensor data. Equipped with our synthesized ground-truth-labeled datasets and informative correlation-based feature, we conduct extensive experiments to critically examine various approaches to evaluating IoT data trust via ML. The results reveal that commonly used ML-based approaches to IoT data trust evaluation, which rely on unsupervised cluster analysis to assign trust labels to unlabeled data, perform poorly. This poor performance can be attributed to the underlying unsubstantiated assumption that clustering provides reliable labels for data trust, a premise that is found to be untenable. The results also show that the ML models learned from datasets augmented via RWI while using the proposed features generalize well to unseen data and outperform existing related approaches. Moreover, we observe that a semi-supervised ML approach that requires only about 10% of the data labeled offers competitive performance while being practically more appealing compared to the fully-supervised approaches.
Searching for Novel Chemistry in Exoplanetary Atmospheres using Machine Learning for Anomaly Detection
Forestano, Roy T., Matchev, Konstantin T., Matcheva, Katia, Unlu, Eyup B.
ABSTRACT The next generation of telescopes will yield a substantial increase in the availability of high-resolution spectroscopic data for thousands of exoplanets. The sheer volume of data and number of planets to be analyzed greatly motivate the development of new, fast and efficient methods for flagging interesting planets for reobservation and detailed analysis. We advocate the application of machine learning (ML) techniques for anomaly (novelty) detection to exoplanet transit spectra, with the goal of identifying planets with unusual chemical composition and even searching for unknown biosignatures. We successfully demonstrate the feasibility of two popular anomaly detection methods (Local Outlier Factor and One Class Support Vector Machine) on a large public database of synthetic spectra. We consider several test cases, each with different levels of instrumental noise. In each case, we use ROC curves to quantify and compare the performance of the two ML techniques. INTRODUCTION Characterization of the chemical composition of the atmospheres of extra-solar system planets is at the forefront of current exoplanetary research. The chemical makeup of a planet's atmosphere is determined by its formation; it is reshaped by its geological evolution, escape processes, interactions with the host star, its space environment; and it is potentially modified by biological activity.
A Framework For Refining Text Classification and Object Recognition from Academic Articles
Li, Jinghong, Ota, Koichi, Gu, Wen, Hasegawa, Shinobu
With the widespread use of the internet, it has become increasingly crucial to extract specific information from vast amounts of academic articles efficiently. Data mining techniques are generally employed to solve this issue. However, data mining for academic articles is challenging since it requires automatically extracting specific patterns in complex and unstructured layout documents. Current data mining methods for academic articles employ rule-based(RB) or machine learning(ML) approaches. However, using rule-based methods incurs a high coding cost for complex typesetting articles. On the other hand, simply using machine learning methods requires annotation work for complex content types within the paper, which can be costly. Furthermore, only using machine learning can lead to cases where patterns easily recognized by rule-based methods are mistakenly extracted. To overcome these issues, from the perspective of analyzing the standard layout and typesetting used in the specified publication, we emphasize implementing specific methods for specific characteristics in academic articles. We have developed a novel Text Block Refinement Framework (TBRF), a machine learning and rule-based scheme hybrid. We used the well-known ACL proceeding articles as experimental data for the validation experiment. The experiment shows that our approach achieved over 95% classification accuracy and 90% detection accuracy for tables and figures.
Algorithms for the Training of Neural Support Vector Machines
Neural support vector machines (NSVMs) allow for the incorporation of domain knowledge in the design of the model architecture. In this article we introduce a set of training algorithms for NSVMs that leverage the Pegasos algorithm and provide a proof of concept by solving a set of standard machine learning tasks.
Semi-supervised detection of structural damage using Variational Autoencoder and a One-Class Support Vector Machine
Pollastro, Andrea, Testa, Giusiana, Bilotta, Antonio, Prevete, Roberto
In recent years, Artificial Neural Networks (ANNs) have been introduced in Structural Health Monitoring (SHM) systems. A semi-supervised method with a data-driven approach allows the ANN training on data acquired from an undamaged structural condition to detect structural damages. In standard approaches, after the training stage, a decision rule is manually defined to detect anomalous data. However, this process could be made automatic using machine learning methods, whom performances are maximised using hyperparameter optimization techniques. The paper proposes a semi-supervised method with a data-driven approach to detect structural anomalies. The methodology consists of: (i) a Variational Autoencoder (VAE) to approximate undamaged data distribution and (ii) a One-Class Support Vector Machine (OC-SVM) to discriminate different health conditions using damage sensitive features extracted from VAE's signal reconstruction. The method is applied to a scale steel structure that was tested in nine damage's scenarios by IASC-ASCE Structural Health Monitoring Task Group.
Federated Classification in Hyperbolic Spaces via Secure Aggregation of Convex Hulls
Prakash, Saurav, Sima, Jin, Pan, Chao, Chien, Eli, Milenkovic, Olgica
Hierarchical and tree-like data sets arise in many applications, including language processing, graph data mining, phylogeny and genomics. It is known that tree-like data cannot be embedded into Euclidean spaces of finite dimension with small distortion. This problem can be mitigated through the use of hyperbolic spaces. When such data also has to be processed in a distributed and privatized setting, it becomes necessary to work with new federated learning methods tailored to hyperbolic spaces. As an initial step towards the development of the field of federated learning in hyperbolic spaces, we propose the first known approach to federated classification in hyperbolic spaces. Our contributions are as follows. First, we develop distributed versions of convex SVM classifiers for Poincar\'e discs. In this setting, the information conveyed from clients to the global classifier are convex hulls of clusters present in individual client data. Second, to avoid label switching issues, we introduce a number-theoretic approach for label recovery based on the so-called integer $B_h$ sequences. Third, we compute the complexity of the convex hulls in hyperbolic spaces to assess the extent of data leakage; at the same time, in order to limit the communication cost for the hulls, we propose a new quantization method for the Poincar\'e disc coupled with Reed-Solomon-like encoding. Fourth, at server level, we introduce a new approach for aggregating convex hulls of the clients based on balanced graph partitioning. We test our method on a collection of diverse data sets, including hierarchical single-cell RNA-seq data from different patients distributed across different repositories that have stringent privacy constraints. The classification accuracy of our method is up to $\sim 11\%$ better than its Euclidean counterpart, demonstrating the importance of privacy-preserving learning in hyperbolic spaces.
Multi-Class Deep SVDD: Anomaly Detection Approach in Astronomy with Distinct Inlier Categories
Pérez-Carrasco, Manuel, Cabrera-Vives, Guillermo, Hernández-García, Lorena, Forster, Francisco, Sánchez-Sáez, Paula, Arancibia, Alejandra Muñoz, Astorga, Nicolás, Bauer, Franz, Bayo, Amelia, Cádiz-Leyton, Martina, Catelan, Marcio
With the increasing volume of astronomical data generated by modern survey telescopes, automated pipelines and machine learning techniques have become crucial for analyzing and extracting knowledge from these datasets. Anomaly detection, i.e. the task of identifying irregular or unexpected patterns in the data, is a complex challenge in astronomy. In this paper, we propose Multi-Class Deep Support Vector Data Description (MCDSVDD), an extension of the state-of-the-art anomaly detection algorithm One-Class Deep SVDD, specifically designed to handle different inlier categories with distinct data distributions. MCDSVDD uses a neural network to map the data into hyperspheres, where each hypersphere represents a specific inlier category. The distance of each sample from the centers of these hyperspheres determines the anomaly score. We evaluate the effectiveness of MCDSVDD by comparing its performance with several anomaly detection algorithms on a large dataset of astronomical light-curves obtained from the Zwicky Transient Facility. Our results demonstrate the efficacy of MCDSVDD in detecting anomalous sources while leveraging the presence of different inlier categories. The code and the data needed to reproduce our results are publicly available at https://github.com/mperezcarrasco/AnomalyALeRCE.