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 Clustering


Mixture of segmentation for heterogeneous functional data

arXiv.org Machine Learning

This type of data is commonly encountered in many fields, including economy (Bugni et al. (2009)), computational biology (Giacofci et al. (2013)) or environmental sciences (Bouveyron et al. (2021a)), to name a few. For an in-depth review of techniques and applications, we refer the interested readers to the books of Ferraty and Vieu (2006) and Ramsay and Silverman (2002, 2005). In many of these applications, such as electricity load, used for illustration here, we observe multiple curves corresponding to several individuals over a given time interval. As a result, one can expect a high heterogeneity of the data, both at the level of the studied individuals, that may correspond to different behavior or consumer profiles, but also on the time dimension where changes of power consumption regimes are likely to occur over the course of one year for instance. To consider a parametric model, homogeneous data is required, both at population and time levels.


UNREAL:Unlabeled Nodes Retrieval and Labeling for Heavily-imbalanced Node Classification

arXiv.org Artificial Intelligence

Extremely skewed label distributions are common in real-world node classification tasks. If not dealt with appropriately, it significantly hurts the performance of GNNs in minority classes. Due to its practical importance, there have been a series of recent research devoted to this challenge. Existing over-sampling techniques smooth the label distribution by generating ``fake'' minority nodes and synthesizing their features and local topology, which largely ignore the rich information of unlabeled nodes on graphs. In this paper, we propose UNREAL, an iterative over-sampling method. The first key difference is that we only add unlabeled nodes instead of synthetic nodes, which eliminates the challenge of feature and neighborhood generation. To select which unlabeled nodes to add, we propose geometric ranking to rank unlabeled nodes. Geometric ranking exploits unsupervised learning in the node embedding space to effectively calibrates pseudo-label assignment. Finally, we identify the issue of geometric imbalance in the embedding space and provide a simple metric to filter out geometrically imbalanced nodes. Extensive experiments on real-world benchmark datasets are conducted, and the empirical results show that our method significantly outperforms current state-of-the-art methods consistent on different datasets with different imbalance ratios.


DORIC : Domain Robust Fine-Tuning for Open Intent Clustering through Dependency Parsing

arXiv.org Artificial Intelligence

We present our work on Track 2 in the Dialog System Technology Challenges 11 (DSTC11). DSTC11-Track2 aims to provide a benchmark for zero-shot, cross-domain, intent-set induction. In the absence of in-domain training dataset, robust utterance representation that can be used across domains is necessary to induce users' intentions. To achieve this, we leveraged a multi-domain dialogue dataset to fine-tune the language model and proposed extracting Verb-Object pairs to remove the artifacts of unnecessary information. Furthermore, we devised the method that generates each cluster's name for the explainability of clustered results. Our approach achieved 3rd place in the precision score and showed superior accuracy and normalized mutual information (NMI) score than the baseline model on various domain datasets.


LAVA: Granular Neuron-Level Explainable AI for Alzheimer's Disease Assessment from Fundus Images

arXiv.org Artificial Intelligence

Alzheimer's Disease (AD) is a progressive neurodegenerative disease and the leading cause of dementia. Early diagnosis is critical for patients to benefit from potential intervention and treatment. The retina has been hypothesized as a diagnostic site for AD detection owing to its anatomical connection with the brain. Developed AI models for this purpose have yet to provide a rational explanation about the decision and neither infer the stage of disease's progression. Along this direction, we propose a novel model-agnostic explainable-AI framework, called Granular Neuron-level Explainer (LAVA), an interpretation prototype that probes into intermediate layers of the Convolutional Neural Network (CNN) models to assess the AD continuum directly from the retinal imaging without longitudinal or clinical evaluation. This method is applied to validate the retinal vasculature as a biomarker and diagnostic modality for Alzheimer's Disease (AD) evaluation. UK Biobank cognitive tests and vascular morphological features suggest LAVA shows strong promise and effectiveness in identifying AD stages across the progression continuum.


Agglomeration of Polygonal Grids using Graph Neural Networks with applications to Multigrid solvers

arXiv.org Artificial Intelligence

Agglomeration-based strategies are important both within adaptive refinement algorithms and to construct scalable multilevel algebraic solvers. In order to automatically perform agglomeration of polygonal grids, we propose the use of Machine Learning (ML) strategies, that can naturally exploit geometrical information about the mesh in order to preserve the grid quality, enhancing performance of numerical methods and reducing the overall computational cost. In particular, we employ the k-means clustering algorithm and Graph Neural Networks (GNNs) to partition the connectivity graph of a computational mesh. Moreover, GNNs have high online inference speed and the advantage to process naturally and simultaneously both the graph structure of mesh and the geometrical information, such as the areas of the elements or their barycentric coordinates. These techniques are compared with METIS, a standard algorithm for graph partitioning, which is meant to process only the graph information of the mesh. We demonstrate that performance in terms of quality metrics is enhanced for ML strategies. Such models also show a good degree of generalization when applied to more complex geometries, such as brain MRI scans, and the capability of preserving the quality of the grid. The effectiveness of these strategies is demonstrated also when applied to MultiGrid (MG) solvers in a Polygonal Discontinuous Galerkin (PolyDG) framework. In the considered experiments, GNNs show overall the best performance in terms of inference speed, accuracy and flexibility of the approach.


Machine Learning for Flow Cytometry Data Analysis

arXiv.org Artificial Intelligence

Flow cytometry mainly used for detecting the characteristics of a number of biochemical substances based on the expression of specific markers in cells. It is particularly useful for detecting membrane surface receptors, antigens, ions, or during DNA/RNA expression. Not only can it be employed as a biomedical research tool for recognising distinctive types of cells in mixed populations, but it can also be used as a diagnostic tool for classifying abnormal cell populations connected with disease. Modern flow cytometers can rapidly analyse tens of thousands of cells at the same time while also measuring multiple parameters from a single cell. However, the rapid development of flow cytometers makes it challenging for conventional analysis methods to interpret flow cytometry data. Researchers need to be able to distinguish interesting-looking cell populations manually in multi-dimensional data collected from millions of cells. Thus, it is essential to find a robust approach for analysing flow cytometry data automatically, specifically in identifying cell populations automatically. This thesis mainly concerns discover the potential shortcoming of current automated-gating algorithms in both real datasets and synthetic datasets. Three representative automated clustering algorithms are selected to be applied, compared and evaluated by completely and partially automated gating. A subspace clustering ProClus also implemented in this thesis. The performance of ProClus in flow cytometry is not well, but it is still a useful algorithm to detect noise.


Wireless Sensor Networks anomaly detection using Machine Learning: A Survey

arXiv.org Artificial Intelligence

Wireless Sensor Networks (WSNs) have become increasingly valuable in various civil/military applications like industrial process con trol, civil engineering applications such as buildings' structural strength monitoring, environmental monitoring, border intrusion, IoT (Internet of Things), and healthcare. However, the sensed data generated by WSNs is often noisy and unreliable, making it a challenge to detect and diagnose anomalies. Machine learning (ML) techniques have been widely used to address this problem by detecting and identifying unusual patterns in the sensed data. This survey paper provides an overview of the state of-the-art applications of ML techniques for data anomaly detection in WSN domains. We first introduce the characteristics of WSNs and the challenges of anomaly detection in WSNs. Then, we review various ML techniques such as supervised, unsupervised, and semi-supervised learn ing that have been applied to WSN data anomaly detection. We also compare different ML-based approaches and their performance evalu ation metrics. Finally, we discuss open research challenges and future directions for applying ML techniques in WSNs sensed data anomaly detection.


High-dimensional multi-view clustering methods

arXiv.org Artificial Intelligence

Multi-view clustering has been widely used in recent years in comparison to single-view clustering, for clear reasons, as it offers more insights into the data, which has brought with it some challenges, such as how to combine these views or features. Most of recent work in this field focuses mainly on tensor representation instead of treating the data as simple matrices. This permits to deal with the high-order correlation between the data which the based matrix approach struggles to capture. Accordingly, we will examine and compare these approaches, particularly in two categories, namely graph-based clustering and subspace-based clustering. We will conduct and report experiments of the main clustering methods over a benchmark datasets.


Clustering with Simplicial Complexes

arXiv.org Artificial Intelligence

In this work, we propose a new clustering algorithm to group nodes in networks based on second-order simplices (aka filled triangles) to leverage higher-order network interactions. We define a simplicial conductance function, which on minimizing, yields an optimal partition with a higher density of filled triangles within the set while the density of filled triangles is smaller across the sets. To this end, we propose a simplicial adjacency operator that captures the relation between the nodes through second-order simplices. This allows us to extend the well-known Cheeger inequality to cluster a simplicial complex. Then, leveraging the Cheeger inequality, we propose the simplicial spectral clustering algorithm. We report results from numerical experiments on synthetic and real-world network data to demonstrate the efficacy of the proposed approach.


Multiway clustering of 3-order tensor via affinity matrix

arXiv.org Artificial Intelligence

We propose a new method of multiway clustering for 3-order tensors via affinity matrix (MCAM). Based on a notion of similarity between the tensor slices and the spread of information of each slice, our model builds an affinity/similarity matrix on which we apply advanced clustering methods. The combination of all clusters of the three modes delivers the desired multiway clustering. Finally, MCAM achieves competitive results compared with other known algorithms on synthetics and real datasets.