Performance Analysis
LLM Fingerprinting via Semantically Conditioned Watermarks
Gloaguen, Thibaud, Staab, Robin, Jovanović, Nikola, Vechev, Martin
Most LLM fingerprinting methods teach the model to respond to a few fixed queries with predefined atypical responses (keys). This memorization often does not survive common deployment steps such as finetuning or quantization, and such keys can be easily detected and filtered from LLM responses, ultimately breaking the fingerprint. To overcome these limitations we introduce LLM fingerprinting via semantically conditioned watermarks, replacing fixed query sets with a broad semantic domain, and replacing brittle atypical keys with a statistical watermarking signal diffused throughout each response. After teaching the model to watermark its responses only to prompts from a predetermined domain e.g., French language, the model owner can use queries from that domain to reliably detect the fingerprint and verify ownership. As we confirm in our thorough experimental evaluation, our fingerprint is both stealthy and robust to all common deployment scenarios.
DeepPrune: Parallel Scaling without Inter-trace Redundancy
Tu, Shangqing, Li, Yaxuan, Bai, Yushi, Hou, Lei, Li, Juanzi
Parallel scaling has emerged as a powerful paradigm to enhance reasoning capabilities in large language models (LLMs) by generating multiple Chain-of-Thought (CoT) traces simultaneously. However, this approach introduces significant computational inefficiency due to inter-trace redundancy -- our analysis reveals that over 80% of parallel reasoning traces yield identical final answers, representing substantial wasted computation. To address this critical efficiency bottleneck, we propose DeepPrune, a novel framework that enables efficient parallel scaling through dynamic pruning. Our method features a specialized judge model trained with focal loss and oversampling techniques to accurately predict answer equivalence from partial reasoning traces which realizes 0.87 AUROC on equivalence prediction, combined with an online greedy clustering algorithm that dynamically prunes redundant paths while preserving answer diversity. Comprehensive evaluations across three challenging benchmarks (AIME 2024, AIME 2025, and GPQA) and multiple reasoning models demonstrate that DeepPrune achieves remarkable token reduction by over 80% compared to conventional consensus sampling on most cases, while maintaining competitive accuracy within 3 percentage points. Our work establishes a new standard for efficient parallel reasoning, making high-performance reasoning more efficient. Our code and data are here: https://deepprune.github.io/
Physics-Driven Spatiotemporal Modeling for AI-Generated Video Detection
Zhang, Shuhai, Lian, ZiHao, Yang, Jiahao, Li, Daiyuan, Pang, Guoxuan, Liu, Feng, Han, Bo, Li, Shutao, Tan, Mingkui
AI-generated videos have achieved near-perfect visual realism (e.g., Sora), urgently necessitating reliable detection mechanisms. However, detecting such videos faces significant challenges in modeling high-dimensional spatiotemporal dynamics and identifying subtle anomalies that violate physical laws. In this paper, we propose a physics-driven AI-generated video detection paradigm based on probability flow conservation principles. Specifically, we propose a statistic called Normalized Spatiotemporal Gradient (NSG), which quantifies the ratio of spatial probability gradients to temporal density changes, explicitly capturing deviations from natural video dynamics. Leveraging pre-trained diffusion models, we develop an NSG estimator through spatial gradients approximation and motion-aware temporal modeling without complex motion decomposition while preserving physical constraints. Building on this, we propose an NSG-based video detection method (NSG-VD) that computes the Maximum Mean Discrepancy (MMD) between NSG features of the test and real videos as a detection metric. Last, we derive an upper bound of NSG feature distances between real and generated videos, proving that generated videos exhibit amplified discrepancies due to distributional shifts. Extensive experiments confirm that NSG-VD outperforms state-of-the-art baselines by 16.00% in Recall and 10.75% in F1-Score, validating the superior performance of NSG-VD. The source code is available at https://github.com/ZSHsh98/NSG-VD.
Self-Improving LLM Agents at Test-Time
Acikgoz, Emre Can, Qian, Cheng, Ji, Heng, Hakkani-Tür, Dilek, Tur, Gokhan
One paradigm of language model (LM) fine-tuning relies on creating large training datasets, under the assumption that high quantity and diversity will enable models to generalize to novel tasks after post-training. In practice, gathering large sets of data is inefficient, and training on them is prohibitively expensive; worse, there is no guarantee that the resulting model will handle complex scenarios or generalize better. Moreover, existing techniques rarely assess whether a training sample provides novel information or is redundant with the knowledge already acquired by the model, resulting in unnecessary costs. In this work, we explore a new test-time self-improvement method to create more effective and generalizable agentic LMs on-the-fly. The proposed algorithm can be summarized in three steps: (i) first it identifies the samples that model struggles with (self-awareness), (ii) then generates similar examples from detected uncertain samples (self-data augmentation), and (iii) uses these newly generated samples at test-time fine-tuning (self-improvement). We study two variants of this approach: Test-Time Self-Improvement (TT-SI), where the same model generates additional training examples from its own uncertain cases and then learns from them, and contrast this approach with Test-Time Distillation (TT-D), where a stronger model generates similar examples for uncertain cases, enabling student to adapt using distilled supervision. Empirical evaluations across different agent benchmarks demonstrate that TT-SI improves the performance with +5.48% absolute accuracy gain on average across all benchmarks and surpasses other standard learning methods, yet using 68x less training samples. Our findings highlight the promise of TT-SI, demonstrating the potential of self-improvement algorithms at test-time as a new paradigm for building more capable agents toward self-evolution.
Large Language Models Meet Virtual Cell: A Survey
Li, Krinos, Xiao, Xianglu, Deng, Shenglong, He, Lucas, Zhong, Zijun, Zou, Yuanjie, Zhan, Zhonghao, Hui, Zheng, Bao, Weiye, Yang, Guang
Large language models (LLMs) are transforming cellular biology by enabling the development of "virtual cells"--computational systems that represent, predict, and reason about cellular states and behaviors. This work provides a comprehensive review of LLMs for virtual cell modeling. We propose a unified taxonomy that organizes existing methods into two paradigms: LLMs as Oracles, for direct cellular modeling, and LLMs as Agents, for orchestrating complex scientific tasks. We identify three core tasks--cellular representation, perturbation prediction, and gene regulation inference--and review their associated models, datasets, evaluation benchmarks, as well as the critical challenges in scalability, generalizability, and interpretability.
HEMERA: A Human-Explainable Transformer Model for Estimating Lung Cancer Risk using GWAS Data
Mahbub, Maria, Klein, Robert J., Selvan, Myvizhi Esai, Yip, Rowena, Henschke, Claudia, Morales, Providencia, Goethert, Ian, Kotevska, Olivera, Shekar, Mayanka Chandra, Wilkinson, Sean R., McAllister, Eileen, Aguayo, Samuel M., Gümüş, Zeynep H., Danciu, Ioana, Program, VA Million Veteran
Lung cancer (LC) is the third most common cancer and the leading cause of cancer deaths in the US. Although smoking is the primary risk factor, the occurrence of LC in never-smokers and familial aggregation studies highlight a genetic component. Genetic biomarkers identified through genome-wide association studies (GWAS) are promising tools for assessing LC risk. We introduce HEMERA (Human-Explainable Transformer Model for Estimating Lung Cancer Risk using GWAS Data), a new framework that applies explainable transformer-based deep learning to GWAS data of single nucleotide polymorphisms (SNPs) for predicting LC risk. Unlike prior approaches, HEMERA directly processes raw genotype data without clinical covariates, introducing additive positional encodings, neural genotype embeddings, and refined variant filtering. A post hoc explainability module based on Layer-wise Integrated Gradients enables attribution of model predictions to specific SNPs, aligning strongly with known LC risk loci. Trained on data from 27,254 Million Veteran Program participants, HEMERA achieved >99% AUC (area under receiver characteristics) score. These findings support transparent, hypothesis-generating models for personalized LC risk assessment and early intervention.
(Token-Level) InfoRMIA: Stronger Membership Inference and Memorization Assessment for LLMs
Machine learning models are known to leak sensitive information, as they inevitably memorize (parts of) their training data. More alarmingly, large language models (LLMs) are now trained on nearly all available data, which amplifies the magnitude of information leakage and raises serious privacy risks. Hence, it is more crucial than ever to quantify privacy risk before the release of LLMs. The standard method to quantify privacy is via membership inference attacks, where the state-of-the-art approach is the Robust Membership Inference Attack (RMIA). In this paper, we present InfoRMIA, a principled information-theoretic formulation of membership inference. Our method consistently outperforms RMIA across benchmarks while also offering improved computational efficiency. In the second part of the paper, we identify the limitations of treating sequence-level membership inference as the gold standard for measuring leakage. We propose a new perspective for studying membership and memorization in LLMs: token-level signals and analyses. We show that a simple token-based InfoRMIA can pinpoint which tokens are memorized within generated outputs, thereby localizing leakage from the sequence level down to individual tokens, while achieving stronger sequence-level inference power on LLMs. This new scope rethinks privacy in LLMs and can lead to more targeted mitigation, such as exact unlearning.
DNA-DetectLLM: Unveiling AI-Generated Text via a DNA-Inspired Mutation-Repair Paradigm
Zhu, Xiaowei, Ren, Yubing, Fang, Fang, Tan, Qingfeng, Wang, Shi, Cao, Yanan
The rapid advancement of large language models (LLMs) has blurred the line between AI-generated and human-written text. This progress brings societal risks such as misinformation, authorship ambiguity, and intellectual property concerns, highlighting the urgent need for reliable AI-generated text detection methods. However, recent advances in generative language modeling have resulted in significant overlap between the feature distributions of human-written and AI-generated text, blurring classification boundaries and making accurate detection increasingly challenging. To address the above challenges, we propose a DNA-inspired perspective, leveraging a repair-based process to directly and interpretably capture the intrinsic differences between human-written and AI-generated text. Building on this perspective, we introduce DNA-DetectLLM, a zero-shot detection method for distinguishing AI-generated and human-written text. The method constructs an ideal AI-generated sequence for each input, iteratively repairs non-optimal tokens, and quantifies the cumulative repair effort as an interpretable detection signal. Empirical evaluations demonstrate that our method achieves state-of-the-art detection performance and exhibits strong robustness against various adversarial attacks and input lengths. Specifically, DNA-DetectLLM achieves relative improvements of 5.55% in AUROC and 2.08% in F1 score across multiple public benchmark datasets. Code and data are available at https://github.com/Xiaoweizhu57/DNA-DetectLLM.
AEGIS : Automated Co-Evolutionary Framework for Guarding Prompt Injections Schema
Liu, Ting-Chun, Hsu, Ching-Yu, Lee, Kuan-Yi, Fu, Chi-An, Lee, Hung-yi
Prompt injection attacks pose a significant challenge to the safe deployment of Large Language Models (LLMs) in real-world applications. While prompt-based detection offers a lightweight and interpretable defense strategy, its effectiveness has been hindered by the need for manual prompt engineering. To address this issue, we propose AEGIS , an Automated co-Evolutionary framework for Guarding prompt Injections Schema. Both attack and defense prompts are iteratively optimized against each other using a gradient-like natural language prompt optimization technique. This framework enables both attackers and defenders to autonomously evolve via a Textual Gradient Optimization (TGO) module, leveraging feedback from an LLM-guided evaluation loop. We evaluate our system on a real-world assignment grading dataset of prompt injection attacks and demonstrate that our method consistently outperforms existing baselines, achieving superior robustness in both attack success and detection. Specifically, the attack success rate (ASR) reaches 1.0, representing an improvement of 0.26 over the baseline. For detection, the true positive rate (TPR) improves by 0.23 compared to the previous best work, reaching 0.84, and the true negative rate (TNR) remains comparable at 0.89. Ablation studies confirm the importance of co-evolution, gradient buffering, and multi-objective optimization. We also confirm that this framework is effective in different LLMs. Our results highlight the promise of adversarial training as a scalable and effective approach for guarding prompt injections.