Performance Analysis
FINDER: Feature Inference on Noisy Datasets using Eigenspace Residuals
Murphy, Trajan, Dogra, Akshunna S., Gu, Hanfeng, Meredith, Caleb, Kon, Mark, Castrillion-Candas, Julio Enrique
''Noisy'' datasets (regimes with low signal to noise ratios, small sample sizes, faulty data collection, etc) remain a key research frontier for classification methods with both theoretical and practical implications. We introduce FINDER, a rigorous framework for analyzing generic classification problems, with tailored algorithms for noisy datasets. FINDER incorporates fundamental stochastic analysis ideas into the feature learning and inference stages to optimally account for the randomness inherent to all empirical datasets. We construct ''stochastic features'' by first viewing empirical datasets as realizations from an underlying random field (without assumptions on its exact distribution) and then mapping them to appropriate Hilbert spaces. The Kosambi-Karhunen-Loรฉve expansion (KLE) breaks these stochastic features into computable irreducible components, which allow classification over noisy datasets via an eigen-decomposition: data from different classes resides in distinct regions, identified by analyzing the spectrum of the associated operators. We validate FINDER on several challenging, data-deficient scientific domains, producing state of the art breakthroughs in: (i) Alzheimer's Disease stage classification, (ii) Remote sensing detection of deforestation. We end with a discussion on when FINDER is expected to outperform existing methods, its failure modes, and other limitations.
FairGRPO: Fair Reinforcement Learning for Equitable Clinical Reasoning
Dai, Shiqi, Dai, Wei, Cheong, Jiaee, Liang, Paul Pu
Medical artificial intelligence systems have achieved remarkable diagnostic capabilities, yet they consistently exhibit performance disparities across demographic groups, causing real-world harm to underrepresented populations. While recent multimodal reasoning foundation models have advanced clinical diagnosis through integrated analysis of diverse medical data, reasoning trainings via reinforcement learning inherit and often amplify biases present in training datasets dominated by majority populations. We introduce Fairness-aware Group Relative Policy Optimization (FairGRPO), a hierarchical reinforcement learning approach that promotes equitable learning across heterogeneous clinical populations. FairGRPO employs adaptive importance weighting of advantages based on representation, task difficulty, and data source. To address the common issue of missing demographic labels in the clinical domain, we further employ unsupervised clustering, which automatically discovers latent demographic groups when labels are unavailable. Through comprehensive experiments across 7 clinical diagnostic datasets spanning 5 clinical modalities across X-ray, CT scan, dermoscropy, mammography and ultrasound, we demonstrate that FairGRPO reduces predictive parity by 27.2% against all vanilla and bias mitigated RL baselines, while improving F1 score by 12.49%. Furthermore, training dynamics analysis reveals that FairGRPO progressively improves fairness throughout optimization, while baseline RL methods exhibit deteriorating fairness as training progresses. Based on FairGRPO, we release FairMedGemma-4B, a fairness-aware clinical VLLM that achieves state-of-the-art performance while demonstrating significantly reduced disparities across demographic groups.
Multi-Resolution Analysis of the Convective Structure of Tropical Cyclones for Short-Term Intensity Guidance
Cucuzzella, Elizabeth, McNeely, Tria, Wood, Kimberly, Lee, Ann B.
Accurate tropical cyclone (TC) short-term intensity forecasting with a 24-hour lead time is essential for disaster mitigation in the Atlantic TC basin. Since most TCs evolve far from land-based observing networks, satellite imagery is critical to monitoring these storms; however, these complex and high-resolution spatial structures can be challenging to qualitatively interpret in real time by forecasters. Here we propose a concise, interpretable, and descriptive approach to quantify fine TC structures with a multi-resolution analysis (MRA) by the discrete wavelet transform, enabling data analysts to identify physically meaningful structural features that strongly correlate with rapid intensity change. Furthermore, deep-learning techniques can build on this MRA for short-term intensity guidance.
CourtGuard: A Local, Multiagent Prompt Injection Classifier
As large language models (LLMs) become integrated into various sensitive applications, prompt injection, the use of prompting to induce harmful behaviors from LLMs, poses an ever increasing risk. Prompt injection attacks can cause LLMs to leak sensitive data, spread misinformation, and exhibit harmful behaviors. To defend against these attacks, we propose CourtGuard, a locally-runnable, multiagent prompt injection classifier. In it, prompts are evaluated in a court-like multiagent LLM system, where a "defense attorney" model argues the prompt is benign, a "prosecution attorney" model argues the prompt is a prompt injection, and a "judge" model gives the final classification. CourtGuard has a lower false positive rate than the Direct Detector, an LLM as-a-judge. However, CourtGuard is generally a worse prompt injection detector. Nevertheless, this lower false positive rate highlights the importance of considering both adversarial and benign scenarios for the classification of a prompt. Additionally, the relative performance of CourtGuard in comparison to other prompt injection classifiers advances the use of multiagent systems as a defense against prompt injection attacks. The implementations of CourtGuard and the Direct Detector with full prompts for Gemma-3-12b-it, Llama-3.3-8B, and Phi-4-mini-instruct are available at https://github.com/isaacwu2000/CourtGuard.
Feature Selection and Regularization in Multi-Class Classification: An Empirical Study of One-vs-Rest Logistic Regression with Gradient Descent Optimization and L1 Sparsity Constraints
Arafat, Jahidul, Tasmin, Fariha, Poudel, Sanjaya
Multi-class wine classification presents fundamental trade-offs between model accuracy, feature dimensionality, and interpretability - critical factors for production deployment in analytical chemistry. This paper presents a comprehensive empirical study of One-vs-Rest logistic regression on the UCI Wine dataset (178 samples, 3 cultivars, 13 chemical features), comparing from-scratch gradient descent implementation against scikit-learn's optimized solvers and quantifying L1 regularization effects on feature sparsity. Manual gradient descent achieves 92.59 percent mean test accuracy with smooth convergence, validating theoretical foundations, though scikit-learn provides 24x training speedup and 98.15 percent accuracy. Class-specific analysis reveals distinct chemical signatures with heterogeneous patterns where color intensity varies dramatically (0.31 to 16.50) across cultivars. L1 regularization produces 54-69 percent feature reduction with only 4.63 percent accuracy decrease, demonstrating favorable interpretability-performance trade-offs. We propose an optimal 5-feature subset achieving 62 percent complexity reduction with estimated 92-94 percent accuracy, enabling cost-effective deployment with 80 dollars savings per sample and 56 percent time reduction. Statistical validation confirms robust generalization with sub-2ms prediction latency suitable for real-time quality control. Our findings provide actionable guidelines for practitioners balancing comprehensive chemical analysis against targeted feature measurement in resource-constrained environments.
Curing Miracle Steps in LLM Mathematical Reasoning with Rubric Rewards
Yuan, Youliang, Mang, Qiuyang, Chen, Jingbang, Wan, Hong, Liu, Xiaoyuan, Xu, Junjielong, Huang, Jen-tse, Wang, Wenxuan, Jiao, Wenxiang, He, Pinjia
Large language models for mathematical reasoning are typically trained with outcome-based rewards, which credit only the final answer. In our experiments, we observe that this paradigm is highly susceptible to reward hacking, leading to a substantial overestimation of a model's reasoning ability. This is evidenced by a high incidence of false positives - solutions that reach the correct final answer through an unsound reasoning process. Through a systematic analysis with human verification, we establish a taxonomy of these failure modes, identifying patterns like Miracle Steps - abrupt jumps to a correct output without a valid preceding derivation. Probing experiments suggest a strong association between these Miracle Steps and memorization, where the model appears to recall the answer directly rather than deriving it. To mitigate this systemic issue, we introduce the Rubric Reward Model (RRM), a process-oriented reward function that evaluates the entire reasoning trajectory against problem-specific rubrics. The generative RRM provides fine-grained, calibrated rewards (0-1) that explicitly penalize logical flaws and encourage rigorous deduction. When integrated into a reinforcement learning pipeline, RRM-based training consistently outperforms outcome-only supervision across four math benchmarks. Notably, it boosts Verified Pass@1024 on AIME2024 from 26.7% to 62.6% and reduces the incidence of Miracle Steps by 71%. Our work demonstrates that rewarding the solution process is crucial for building models that are not only more accurate but also more reliable.
Toward Purpose-oriented Topic Model Evaluation enabled by Large Language Models
Tan, Zhiyin, D'Souza, Jennifer
This study presents a framework for automated evaluation of dynamically evolving topic models using Large Language Models (LLMs). Topic modeling is essential for organizing and retrieving scholarly content in digital library systems, helping users navigate complex and evolving knowledge domains. However, widely used automated metrics, such as coherence and diversity, often capture only narrow statistical patterns and fail to explain semantic failures in practice. We introduce a purpose-oriented evaluation framework that employs nine LLM-based metrics spanning four key dimensions of topic quality: lexical validity, intra-topic semantic soundness, inter-topic structural soundness, and document-topic alignment soundness. The framework is validated through adversarial and sampling-based protocols, and is applied across datasets spanning news articles, scholarly publications, and social media posts, as well as multiple topic modeling methods and open-source LLMs. Our analysis shows that LLM-based metrics provide interpretable, robust, and task-relevant assessments, uncovering critical weaknesses in topic models such as redundancy and semantic drift, which are often missed by traditional metrics. These results support the development of scalable, fine-grained evaluation tools for maintaining topic relevance in dynamic datasets. All code and data supporting this work are accessible at https://github.com/zhiyintan/topic-model-LLMjudgment.
CyberRAG: An Agentic RAG cyber attack classification and reporting tool
Blefari, Francesco, Cosentino, Cristian, Pironti, Francesco Aurelio, Furfaro, Angelo, Marozzo, Fabrizio
Intrusion Detection and Prevention Systems (IDS/IPS) in large enterprises can generate hundreds of thousands of alerts per hour, overwhelming analysts with logs requiring rapidly evolving expertise. Conventional machine-learning detectors reduce alert volume but still yield many false positives, while standard Retrieval-Augmented Generation (RAG) pipelines often retrieve irrelevant context and fail to justify predictions. We present CyberRAG, a modular agent-based RAG framework that delivers real-time classification, explanation, and structured reporting for cyber-attacks. A central LLM agent orchestrates: (i) fine-tuned classifiers specialized by attack family; (ii) tool adapters for enrichment and alerting; and (iii) an iterative retrieval-and-reason loop that queries a domain-specific knowledge base until evidence is relevant and self-consistent. Unlike traditional RAG, CyberRAG adopts an agentic design that enables dynamic control flow and adaptive reasoning. This architecture autonomously refines threat labels and natural-language justifications, reducing false positives and enhancing interpretability. It is also extensible: new attack types can be supported by adding classifiers without retraining the core agent. CyberRAG was evaluated on SQL Injection, XSS, and SSTI, achieving over 94\% accuracy per class and a final classification accuracy of 94.92\% through semantic orchestration. Generated explanations reached 0.94 in BERTScore and 4.9/5 in GPT-4-based expert evaluation, with robustness preserved against adversarial and unseen payloads. These results show that agentic, specialist-oriented RAG can combine high detection accuracy with trustworthy, SOC-ready prose, offering a flexible path toward partially automated cyber-defense workflows.
Evaluating NLP Embedding Models for Handling Science-Specific Symbolic Expressions in Student Texts
Bleckmann, Tom, Tschisgale, Paul
In recent years, natural language processing (NLP) has become integral to educational data mining, particularly in the analysis of student-generated language products. For research and assessment purposes, so-called embedding models are typically employed to generate numeric representations of text that capture its semantic content for use in subsequent quantitative analyses. Y et when it comes to science-related language, symbolic expressions such as equations and formulas introduce challenges that current embedding models struggle to address. Existing research studies and practical applications often either overlook these challenges or remove symbolic expressions altogether, potentially leading to biased research findings and diminished performance of practical applications. This study therefore explores how contemporary embedding models differ in their capability to process and interpret science-related symbolic expressions. To this end, various embedding models are evaluated using physics-specific symbolic expressions drawn from authentic student responses, with performance assessed via two approaches: 1) similarity-based analyses and 2) integration into a machine learning pipeline. Our findings reveal significant differences in model performance, with OpenAI's GPT-text-embedding-3-large outperforming all other examined models, though its advantage over other models was moderate rather than decisive. Overall, this study underscores the importance for educational data mining researchers and practitioners of carefully selecting NLP embedding models when working with science-related language products that include symbolic expressions. The code and (partial) data are available at https: //doi.org/10.17605/OSF.IO/6XQVG.
Concept-Guided Interpretability via Neural Chunking
Wu, Shuchen, Alaniz, Stephan, Karthik, Shyamgopal, Dayan, Peter, Schulz, Eric, Akata, Zeynep
Neural networks are often described as black boxes, reflecting the significant challenge of understanding their internal workings and interactions. We propose a different perspective that challenges the prevailing view: rather than being inscrutable, neural networks exhibit patterns in their raw population activity that mirror regularities in the training data. We refer to this as the Reflection Hypothesis and provide evidence for this phenomenon in both simple recurrent neural networks (RNNs) and complex large language models (LLMs). Building on this insight, we propose to leverage our cognitive tendency of chunking to segment high-dimensional neural population dynamics into interpretable units that reflect underlying concepts. We propose three methods to extract recurring chunks on a neural population level, complementing each other based on label availability and neural data dimensionality. Discrete sequence chunking (DSC) learns a dictionary of entities in a lower-dimensional neural space; population averaging (PA) extracts recurring entities that correspond to known labels; and unsupervised chunk discovery (UCD) can be used when labels are absent. We demonstrate the effectiveness of these methods in extracting concept-encoding entities agnostic to model architectures. These concepts can be both concrete (words), abstract (POS tags), or structural (narrative schema). Additionally, we show that extracted chunks play a causal role in network behavior, as grafting them leads to controlled and predictable changes in the model's behavior. Our work points to a new direction for interpretability, one that harnesses both cognitive principles and the structure of naturalistic data to reveal the hidden computations of complex learning systems, gradually transforming them from black boxes into systems we can begin to understand.