Performance Analysis
Application-driven Validation of Posteriors in Inverse Problems
Adler, Tim J., Nölke, Jan-Hinrich, Reinke, Annika, Tizabi, Minu Dietlinde, Gruber, Sebastian, Trofimova, Dasha, Ardizzone, Lynton, Jaeger, Paul F., Buettner, Florian, Köthe, Ullrich, Maier-Hein, Lena
Current deep learning-based solutions for image analysis tasks are commonly incapable of handling problems to which multiple different plausible solutions exist. In response, posterior-based methods such as conditional Diffusion Models and Invertible Neural Networks have emerged; however, their translation is hampered by a lack of research on adequate validation. In other words, the way progress is measured often does not reflect the needs of the driving practical application. Closing this gap in the literature, we present the first systematic framework for the application-driven validation of posterior-based methods in inverse problems. As a methodological novelty, it adopts key principles from the field of object detection validation, which has a long history of addressing the question of how to locate and match multiple object instances in an image. Treating modes as instances enables us to perform mode-centric validation, using well-interpretable metrics from the application perspective. We demonstrate the value of our framework through instantiations for a synthetic toy example and two medical vision use cases: pose estimation in surgery and imaging-based quantification of functional tissue parameters for diagnostics. Our framework offers key advantages over common approaches to posterior validation in all three examples and could thus revolutionize performance assessment in inverse problems.
A new method of modeling the multi-stage decision-making process of CRT using machine learning with uncertainty quantification
Larsen, Kristoffer, Zhao, Chen, Keyak, Joyce, Sha, Qiuying, Paez, Diana, Zhang, Xinwei, Zou, Jiangang, Peix, Amalia, Zhou, Weihua
Aims. The purpose of this study is to create a multi-stage machine learning model to predict cardiac resynchronization therapy (CRT) response for heart failure (HF) patients. This model exploits uncertainty quantification to recommend additional collection of single-photon emission computed tomography myocardial perfusion imaging (SPECT MPI) variables if baseline clinical variables and features from electrocardiogram (ECG) are not sufficient. Methods. 218 patients who underwent rest-gated SPECT MPI were enrolled in this study. CRT response was defined as an increase in left ventricular ejection fraction (LVEF) > 5% at a 6 month follow-up. A multi-stage ML model was created by combining two ensemble models. Results. The response rate for CRT was 55.5% (n = 121) with overall male gender 61.0% (n = 133), an average age of 62.0, and LVEF of 27.7. The multi-stage model performed similarly to Ensemble 2 (which utilized the additional SPECT data) with AUC of 0.75 vs. 0.77, accuracy of 0.71 vs. 0.69, sensitivity of 0.70 vs. 0.72, and specificity 0.72 vs. 0.65, respectively. However, the multi-stage model only required SPECT MPI data for 52.7% of the patients across all folds. Conclusions. By using rule-based logic stemming from uncertainty quantification, the multi-stage model was able to reduce the need for additional SPECT MPI data acquisition without sacrificing performance.
Causality-Based Feature Importance Quantifying Methods: PN-FI, PS-FI and PNS-FI
Du, Shuxian, Sun, Yaxiu, Du, Changyi
In the current ML field models are getting larger and more complex, and data used for model training are also getting larger in quantity and higher in dimensions. Therefore, in order to train better models, and save training time and computational resources, a good Feature Selection (FS) method in the preprocessing stage is necessary. Feature importance (FI) is of great importance since it is the basis of feature selection. Therefore, this paper creatively introduces the calculation of PN (the probability of Necessity), PN (the probability of Sufficiency), and PNS (the probability of Necessity and Sufficiency) of Causality into quantifying feature importance and creates 3 new FI measuring methods---- PN-FI, which means how much importance a feature has in image recognition tasks, PS-FI that means how much importance a feature has in image generating tasks, and PNS-FI which measures both. The main body of this paper is three RCTs, with whose results we show how PS-FI, PN-FI, and PNS-FI of 3 features----dog nose, dog eyes, and dog mouth are calculated. The experiments show that firstly, FI values are intervals with tight upper and lower bounds. Secondly, the feature dog eyes has the most importance while the other two have almost the same. Thirdly, the bounds of PNS and PN are tighter than that of PS's.
Fair Causal Feature Selection
Ling, Zhaolong, Xu, Enqi, Zhou, Peng, Du, Liang, Yu, Kui, Wu, Xindong
Fair feature selection for classification decision tasks has recently garnered significant attention from researchers. However, existing fair feature selection algorithms fall short of providing a full explanation of the causal relationship between features and sensitive attributes, potentially impacting the accuracy of fair feature identification. To address this issue, we propose a Fair Causal Feature Selection algorithm, called FairCFS. Specifically, FairCFS constructs a localized causal graph that identifies the Markov blankets of class and sensitive variables, to block the transmission of sensitive information for selecting fair causal features. Extensive experiments on seven public real-world datasets validate that FairCFS has comparable accuracy compared to eight state-of-the-art feature selection algorithms, while presenting more superior fairness.
Contrastive Learning for Predicting Cancer Prognosis Using Gene Expression Values
Sun, Anchen, Chen, Zhibin, Cai, Xiaodong
Several artificial neural networks (ANNs) have been developed recently to predict the prognosis of different types of cancer based on the tumor transcriptome. However, they have not demonstrated significantly better performance than the regularized Cox proportional hazards regression model. Training an ANN is challenging with a limited number of data samples and a high-dimensional feature space. Recent advancements in image classification have shown that contrastive learning (CL) can facilitate further learning tasks by learning good feature representation from a limited number of data samples. In this paper, we applied supervised CL to tumor gene expression and clinical data to learn feature representations in a low-dimensional space. We then used these learned features to train a Cox model for predicting cancer prognosis. Using data from The Cancer Genome Atlas (TCGA), we demonstrated that our CL-based Cox model (CLCox) significantly outperformed existing methods in predicting the prognosis of 19 types of cancer considered. We also developed CL-based classifiers to classify tumors into different risk groups and showed that CL can significantly improve classification accuracy. Specifically, our CL-based classifiers achieved an area under the receiver operating characteristic curve (AUC) of greater than 0.8 for 14 types of cancer and and an AUC of greater than 0.9 for 2 types of cancer. CLCox models and CL-based classifiers trained with TCGA lung cancer and prostate cancer data were validated with the data of two independent cohorts.
Difficult Lessons on Social Prediction from Wisconsin Public Schools
Perdomo, Juan C., Britton, Tolani, Hardt, Moritz, Abebe, Rediet
Early warning systems (EWS) are predictive tools at the center of recent efforts to improve graduation rates in public schools across the United States. These systems assist in targeting interventions to individual students by predicting which students are at risk of dropping out. Despite significant investments in their widespread adoption, there remain large gaps in our understanding of the efficacy of EWS, and the role of statistical risk scores in education. In this work, we draw on nearly a decade's worth of data from a system used throughout Wisconsin to provide the first large-scale evaluation of the long-term impact of EWS on graduation outcomes. We present empirical evidence that the prediction system accurately sorts students by their dropout risk. We also find that it may have caused a single-digit percentage increase in graduation rates, though our empirical analyses cannot reliably rule out that there has been no positive treatment effect. Going beyond a retrospective evaluation of DEWS, we draw attention to a central question at the heart of the use of EWS: Are individual risk scores necessary for effectively targeting interventions? We propose a simple mechanism that only uses information about students' environments -- such as their schools, and districts -- and argue that this mechanism can target interventions just as efficiently as the individual risk score-based mechanism. Our argument holds even if individual predictions are highly accurate and effective interventions exist. In addition to motivating this simple targeting mechanism, our work provides a novel empirical backbone for the robust qualitative understanding among education researchers that dropout is structurally determined. Combined, our insights call into question the marginal value of individual predictions in settings where outcomes are driven by high levels of inequality.
Applying Automated Machine Translation to Educational Video Courses
We studied the capability of automated machine translation in the online video education space by automatically translating Khan Academy videos with state-of-the-art translation models and applying text-to-speech synthesis and audio/video synchronization to build engaging videos in target languages. We also analyzed and established two reliable translation confidence estimators based on round-trip translations in order to efficiently manage translation quality and reduce human translation effort. Finally, we developed a deployable system to deliver translated videos to end users and collect user corrections for iterative improvement.
Empowering Fake-News Mitigation: Insights from Sharers' Social Media Post-Histories
Schoenmueller, Verena, Blanchard, Simon J., Johar, Gita V.
Misinformation is a global concern and limiting its spread is critical for protecting democracy, public health, and consumers. We propose that consumers' own social media post-histories are an underutilized data source to study what leads them to share links to fake-news. In Study 1, we explore how textual cues extracted from post-histories distinguish fake-news sharers from random social media users and others in the misinformation ecosystem. Among other results, we find across two datasets that fake-news sharers use more words related to anger, religion and power. In Study 2, we show that adding textual cues from post-histories improves the accuracy of models to predict who is likely to share fake-news. In Study 3, we provide a preliminary test of two mitigation strategies deduced from Study 1 - activating religious values and reducing anger - and find that they reduce fake-news sharing and sharing more generally. In Study 4, we combine survey responses with users' verified Twitter post-histories and show that using empowering language in a fact-checking browser extension ad increases download intentions. Our research encourages marketers, misinformation scholars, and practitioners to use post-histories to develop theories and test interventions to reduce the spread of misinformation.
Sentiment Analysis and Effect of COVID-19 Pandemic using College SubReddit Data
Background: The COVID-19 pandemic has affected our society and human well-being in various ways. In this study, we investigate how the pandemic has influenced people's emotions and psychological states compared to a pre-pandemic period using real-world data from social media. Method: We collected Reddit social media data from 2019 (pre-pandemic) and 2020 (pandemic) from the subreddits communities associated with eight universities. We applied the pre-trained Robustly Optimized BERT pre-training approach (RoBERTa) to learn text embedding from the Reddit messages, and leveraged the relational information among posted messages to train a graph attention network (GAT) for sentiment classification. Finally, we applied model stacking to combine the prediction probabilities from RoBERTa and GAT to yield the final classification on sentiment. With the model-predicted sentiment labels on the collected data, we used a generalized linear mixed-effects model to estimate the effects of pandemic and in-person teaching during the pandemic on sentiment. Results: The results suggest that the odds of negative sentiments in 2020 (pandemic) were 25.7% higher than the odds in 2019 (pre-pandemic) with a $p$-value $<0.001$; and the odds of negative sentiments associated in-person learning were 48.3% higher than with remote learning in 2020 with a $p$-value of 0.029. Conclusions: Our study results are consistent with the findings in the literature on the negative impacts of the pandemic on people's emotions and psychological states. Our study contributes to the growing real-world evidence on the various negative impacts of the pandemic on our society; it also provides a good example of using both ML techniques and statistical modeling and inference to make better use of real-world data.
Pivotal Estimation of Linear Discriminant Analysis in High Dimensions
Fang, Ethan X., Mei, Yajun, Shi, Yuyang, Xu, Qunzhi, Zhao, Tuo
We consider the linear discriminant analysis problem in the high-dimensional settings. In this work, we propose PANDA(PivotAl liNear Discriminant Analysis), a tuning-insensitive method in the sense that it requires very little effort to tune the parameters. Moreover, we prove that PANDA achieves the optimal convergence rate in terms of both the estimation error and misclassification rate. Our theoretical results are backed up by thorough numerical studies using both simulated and real datasets. In comparison with the existing methods, we observe that our proposed PANDA yields equal or better performance, and requires substantially less effort in parameter tuning.