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Mean BERTs make erratic language teachers: the effectiveness of latent bootstrapping in low-resource settings

arXiv.org Artificial Intelligence

This paper explores the use of latent bootstrapping, an alternative self-supervision technique, for pretraining language models. Unlike the typical practice of using self-supervision on discrete subwords, latent bootstrapping leverages contextualized embeddings for a richer supervision signal. We conduct experiments to assess how effective this approach is for acquiring linguistic knowledge from limited resources. Specifically, our experiments are based on the BabyLM shared task, which includes pretraining on two small curated corpora and an evaluation on four linguistic benchmarks.


Intelligent Breast Cancer Diagnosis with Heuristic-assisted Trans-Res-U-Net and Multiscale DenseNet using Mammogram Images

arXiv.org Artificial Intelligence

Abstract-Breast cancer (BC) significantly contributes to cancer-related mortality in women, underscoring the criticality of early detection for optimal patient outcomes. A mammography is a key tool for identifying and diagnosing breast abnormalities; however, accurately distinguishing malignant mass lesions remains challenging. To address this issue, we propose a novel deep learning approach for BC screening utilizing mammography images. Our proposed model comprises three distinct stages: data collection from established benchmark sources, image segmentation employing an Atrous Convolution-based Attentive and Adaptive Trans-Res-UNet (ACA-ATRUNet) architecture, and BC identification via an Atrous Convolution-based Attentive and Adaptive Multiscale DenseNet (ACA-AMDN) model. The hyperparameters within the ACA-ATRUNet and ACA-AMDN models are optimised using the Modified Mussel Length-based Eurasian Oystercatcher Optimization (MML-EOO) algorithm. Performance evaluation, leveraging multiple metrics, is conducted, and a comparative analysis against conventional methods is presented. Our experimental findings reveal that the proposed BC detection framework attains superior precision rates in early disease detection, demonstrating its potential to enhance mammography-based screening methodologies. Keywords: Breast Cancer; Mammograms; Atrous Convolution-based Attentive and Adaptive Trans-Res-UNet; Modified Mussel Length-based Eurasian Oystercatcher Optimization; Atrous Convolution based Attentive and Adaptive Multi-scale DenseNet 1. Introduction The most prevalent type of malignancy in women is BC. Next to cancer, it is the second leading reason of mortality in women [1]. One in every 36 female deaths is related to BC, or around 3% of all female deaths are caused by BC. In order to improve the survival rate of the patient, early BC identification is crucial [2]. Researchers are introducing increasingly accurate models for BC diagnosis into practice because of the tremendous fatality and high expense of cancer-related treatment [3, 4]. Radiotherapists use mammography as an efficient imaging method to detect and screen the presence of BC. Mammography is the primary clinical test for BC and is quite accurate in predicting BC. Breast lumps and calcifications are considered the early signs of BC, respectively.


Introducing instance label correlation in multiple instance learning. Application to cancer detection on histopathological images

arXiv.org Artificial Intelligence

In the last years, the weakly supervised paradigm of multiple instance learning (MIL) has become very popular in many different areas. A paradigmatic example is computational pathology, where the lack of patch-level labels for whole-slide images prevents the application of supervised models. Probabilistic MIL methods based on Gaussian Processes (GPs) have obtained promising results due to their excellent uncertainty estimation capabilities. However, these are general-purpose MIL methods that do not take into account one important fact: in (histopathological) images, the labels of neighboring patches are expected to be correlated. In this work, we extend a state-of-the-art GP-based MIL method, which is called VGPMIL-PR, to exploit such correlation. To do so, we develop a novel coupling term inspired by the statistical physics Ising model. We use variational inference to estimate all the model parameters. Interestingly, the VGPMIL-PR formulation is recovered when the weight that regulates the strength of the Ising term vanishes. The performance of the proposed method is assessed in two real-world problems of prostate cancer detection. We show that our model achieves better results than other state-of-the-art probabilistic MIL methods. We also provide different visualizations and analysis to gain insights into the influence of the novel Ising term. These insights are expected to facilitate the application of the proposed model to other research areas.


Learning Sample Difficulty from Pre-trained Models for Reliable Prediction

arXiv.org Artificial Intelligence

Large-scale pre-trained models have achieved remarkable success in many applications, but how to leverage them to improve the prediction reliability of downstream models is undesirably under-explored. Moreover, modern neural networks have been found to be poorly calibrated and make overconfident predictions regardless of inherent sample difficulty and data uncertainty. To address this issue, we propose to utilize large-scale pre-trained models to guide downstream model training with sample difficulty-aware entropy regularization. Pre-trained models that have been exposed to large-scale datasets and do not overfit the downstream training classes enable us to measure each training sample's difficulty via feature-space Gaussian modeling and relative Mahalanobis distance computation. Importantly, by adaptively penalizing overconfident prediction based on the sample difficulty, we simultaneously improve accuracy and uncertainty calibration across challenging benchmarks (e.g., +0.55% ACC and -3.7% ECE on ImageNet1k using ResNet34), consistently surpassing competitive baselines for reliable prediction. The improved uncertainty estimate further improves selective classification (abstaining from erroneous predictions) and out-of-distribution detection.


EduceLab-Scrolls: Verifiable Recovery of Text from Herculaneum Papyri using X-ray CT

arXiv.org Artificial Intelligence

We present a complete software pipeline for revealing the hidden texts of the Herculaneum papyri using X-ray CT images. This enhanced virtual unwrapping pipeline combines machine learning with a novel geometric framework linking 3D and 2D images. We also present EduceLab-Scrolls, a comprehensive open dataset representing two decades of research effort on this problem. EduceLab-Scrolls contains a set of volumetric X-ray CT images of both small fragments and intact, rolled scrolls. The dataset also contains 2D image labels that are used in the supervised training of an ink detection model. Labeling is enabled by aligning spectral photography of scroll fragments with X-ray CT images of the same fragments, thus creating a machine-learnable mapping between image spaces and modalities. This alignment permits supervised learning for the detection of "invisible" carbon ink in X-ray CT, a task that is "impossible" even for human expert labelers. To our knowledge, this is the first aligned dataset of its kind and is the largest dataset ever released in the heritage domain. Our method is capable of revealing accurate lines of text on scroll fragments with known ground truth. Revealed text is verified using visual confirmation, quantitative image metrics, and scholarly review. EduceLab-Scrolls has also enabled the discovery, for the first time, of hidden texts from the Herculaneum papyri, which we present here. We anticipate that the EduceLab-Scrolls dataset will generate more textual discovery as research continues.


Towards Unbounded Machine Unlearning

arXiv.org Artificial Intelligence

Deep machine unlearning is the problem of `removing' from a trained neural network a subset of its training set. This problem is very timely and has many applications, including the key tasks of removing biases (RB), resolving confusion (RC) (caused by mislabelled data in trained models), as well as allowing users to exercise their `right to be forgotten' to protect User Privacy (UP). This paper is the first, to our knowledge, to study unlearning for different applications (RB, RC, UP), with the view that each has its own desiderata, definitions for `forgetting' and associated metrics for forget quality. For UP, we propose a novel adaptation of a strong Membership Inference Attack for unlearning. We also propose SCRUB, a novel unlearning algorithm, which is the only method that is consistently a top performer for forget quality across the different application-dependent metrics for RB, RC, and UP. At the same time, SCRUB is also consistently a top performer on metrics that measure model utility (i.e. accuracy on retained data and generalization), and is more efficient than previous work. The above are substantiated through a comprehensive empirical evaluation against previous state-of-the-art.


Exposing flaws of generative model evaluation metrics and their unfair treatment of diffusion models

arXiv.org Machine Learning

We systematically study a wide variety of generative models spanning semantically-diverse image datasets to understand and improve the feature extractors and metrics used to evaluate them. Using best practices in psychophysics, we measure human perception of image realism for generated samples by conducting the largest experiment evaluating generative models to date, and find that no existing metric strongly correlates with human evaluations. Comparing to 17 modern metrics for evaluating the overall performance, fidelity, diversity, rarity, and memorization of generative models, we find that the state-of-the-art perceptual realism of diffusion models as judged by humans is not reflected in commonly reported metrics such as FID. This discrepancy is not explained by diversity in generated samples, though one cause is over-reliance on Inception-V3. We address these flaws through a study of alternative self-supervised feature extractors, find that the semantic information encoded by individual networks strongly depends on their training procedure, and show that DINOv2-ViT-L/14 allows for much richer evaluation of generative models. Next, we investigate data memorization, and find that generative models do memorize training examples on simple, smaller datasets like CIFAR10, but not necessarily on more complex datasets like ImageNet. However, our experiments show that current metrics do not properly detect memorization: none in the literature is able to separate memorization from other phenomena such as underfitting or mode shrinkage. To facilitate further development of generative models and their evaluation we release all generated image datasets, human evaluation data, and a modular library to compute 17 common metrics for 9 different encoders at https://github.com/layer6ai-labs/dgm-eval.


Scaling Riemannian Diffusion Models

arXiv.org Machine Learning

Riemannian diffusion models draw inspiration from standard Euclidean space diffusion models to learn distributions on general manifolds. Unfortunately, the additional geometric complexity renders the diffusion transition term inexpressible in closed form, so prior methods resort to imprecise approximations of the score matching training objective that degrade performance and preclude applications in high dimensions. In this work, we reexamine these approximations and propose several practical improvements. Our key observation is that most relevant manifolds are symmetric spaces, which are much more amenable to computation. By leveraging and combining various ans\"{a}tze, we can quickly compute relevant quantities to high precision. On low dimensional datasets, our correction produces a noticeable improvement, allowing diffusion to compete with other methods. Additionally, we show that our method enables us to scale to high dimensional tasks on nontrivial manifolds. In particular, we model QCD densities on $SU(n)$ lattices and contrastively learned embeddings on high dimensional hyperspheres.


A Bayesian Methodology for Estimation for Sparse Canonical Correlation

arXiv.org Machine Learning

It can be challenging to perform an integrative statistical analysis of multi-view high-dimensional data acquired from different experiments on each subject who participated in a joint study. Canonical Correlation Analysis (CCA) is a statistical procedure for identifying relationships between such data sets. In that context, Structured Sparse CCA (ScSCCA) is a rapidly emerging methodological area that aims for robust modeling of the interrelations between the different data modalities by assuming the corresponding CCA directional vectors to be sparse. Although it is a rapidly growing area of statistical methodology development, there is a need for developing related methodologies in the Bayesian paradigm. In this manuscript, we propose a novel ScSCCA approach where we employ a Bayesian infinite factor model and aim to achieve robust estimation by encouraging sparsity in two different levels of the modeling framework. Firstly, we utilize a multiplicative Half-Cauchy process prior to encourage sparsity at the level of the latent variable loading matrices. Additionally, we promote further sparsity in the covariance matrix by using graphical horseshoe prior or diagonal structure. We conduct multiple simulations to compare the performance of the proposed method with that of other frequently used CCA procedures, and we apply the developed procedures to analyze multi-omics data arising from a breast cancer study.


Auditing Fairness by Betting

arXiv.org Machine Learning

As algorithmic decision-making continues to increase in prevalence across both the private and public sectors [1, 2], there has been an increasing push to scrutinize the fairness of these systems. This has lead to an explosion of interest in so-called "algorithmic fairness", and a significant body of work has focused on both defining fairness and training models in fair ways (e.g., [3-5]). However, preventing and redressing harms in real systems also requires the ability to audit models in order to assess their impact; such algorithmic audits are an increasing area of focus for researchers and practitioners [6-9]. Auditing may begin during model development [10], but as model behavior often changes over time throughout real-world deployment in response to distribution shift or model updates [11, 12], it is often necessary to repeatedly audit the performance of algorithmic systems over time [8, 13]. Detecting whether deployed models continue to meet various fairness criteria is of paramount importance to deciding whether an automated decision-making system continues to act reliably and whether intervention is necessary. In this work, we consider the perspective of an auditor or auditing agency tasked with determining if a model deployed "in the wild" is fair or not. Data concerning the system's decisions are gathered over time (perhaps with the purpose of testing fairness but perhaps for another purpose) and our goal is to determine if there is sufficient evidence to conclude that the system is unfair. If a system is in fact unfair, we want to determine so as early as possible, both in order to avert harms to users and because auditing may require expensive investment to collect or label samples [8, 13]. Following the recent work of Taskesen et al. [14] and Si et al. [15], a natural statistical framework for thinking about this problem is hypothesis testing.