Accuracy
Challenges in data-based geospatial modeling for environmental research and practice
Koldasbayeva, Diana, Tregubova, Polina, Gasanov, Mikhail, Zaytsev, Alexey, Petrovskaia, Anna, Burnaev, Evgeny
With the rise of electronic data, particularly Earth observation data, data-based geospatial modelling using machine learning (ML) has gained popularity in environmental research. Accurate geospatial predictions are vital for domain research based on ecosystem monitoring and quality assessment and for policy-making and action planning, considering effective management of natural resources. The accuracy and computation speed of ML has generally proved efficient. However, many questions have yet to be addressed to obtain precise and reproducible results suitable for further use in both research and practice. A better understanding of the ML concepts applicable to geospatial problems enhances the development of data science tools providing transparent information crucial for making decisions on global challenges such as biosphere degradation and climate change. This survey reviews common nuances in geospatial modelling, such as imbalanced data, spatial autocorrelation, prediction errors, model generalisation, domain specificity, and uncertainty estimation. We provide an overview of techniques and popular programming tools to overcome or account for the challenges. We also discuss prospects for geospatial Artificial Intelligence in environmental applications. To date, obtaining spatial predictions is an essential step in the monitoring, assessment, and prognosis tasks applicable to all kinds of Earth systems on both local and global scales (Figure 1).
Can We Utilize Pre-trained Language Models within Causal Discovery Algorithms?
Lee, Chanhui, Kim, Juhyeon, Jeong, Yongjun, Lyu, Juhyun, Kim, Junghee, Lee, Sangmin, Han, Sangjun, Choe, Hyeokjun, Park, Soyeon, Lim, Woohyung, Lim, Sungbin, Lee, Sanghack
Scaling laws have allowed Pre-trained Language Models (PLMs) into the field of causal reasoning. Causal reasoning of PLM relies solely on text-based descriptions, in contrast to causal discovery which aims to determine the causal relationships between variables utilizing data. Recently, there has been current research regarding a method that mimics causal discovery by aggregating the outcomes of repetitive causal reasoning, achieved through specifically designed prompts. It highlights the usefulness of PLMs in discovering cause and effect, which is often limited by a lack of data, especially when dealing with multiple variables. Conversely, the characteristics of PLMs which are that PLMs do not analyze data and they are highly dependent on prompt design leads to a crucial limitation for directly using PLMs in causal discovery. Accordingly, PLM-based causal reasoning deeply depends on the prompt design and carries out the risk of overconfidence and false predictions in determining causal relationships. In this paper, we empirically demonstrate the aforementioned limitations of PLM-based causal reasoning through experiments on physics-inspired synthetic data. Then, we propose a new framework that integrates prior knowledge obtained from PLM with a causal discovery algorithm. This is accomplished by initializing an adjacency matrix for causal discovery and incorporating regularization using prior knowledge. Our proposed framework not only demonstrates improved performance through the integration of PLM and causal discovery but also suggests how to leverage PLM-extracted prior knowledge with existing causal discovery algorithms.
Vashantor: A Large-scale Multilingual Benchmark Dataset for Automated Translation of Bangla Regional Dialects to Bangla Language
Faria, Fatema Tuj Johora, Moin, Mukaffi Bin, Wase, Ahmed Al, Ahmmed, Mehidi, Sani, Md. Rabius, Muhammad, Tashreef
The Bangla linguistic variety is a fascinating mix of regional dialects that adds to the cultural diversity of the Bangla-speaking community. Despite extensive study into translating Bangla to English, English to Bangla, and Banglish to Bangla in the past, there has been a noticeable gap in translating Bangla regional dialects into standard Bangla. In this study, we set out to fill this gap by creating a collection of 32,500 sentences, encompassing Bangla, Banglish, and English, representing five regional Bangla dialects. Our aim is to translate these regional dialects into standard Bangla and detect regions accurately. To achieve this, we proposed models known as mT5 and BanglaT5 for translating regional dialects into standard Bangla. Additionally, we employed mBERT and Bangla-bert-base to determine the specific regions from where these dialects originated. Our experimental results showed the highest BLEU score of 69.06 for Mymensingh regional dialects and the lowest BLEU score of 36.75 for Chittagong regional dialects. We also observed the lowest average word error rate of 0.1548 for Mymensingh regional dialects and the highest of 0.3385 for Chittagong regional dialects. For region detection, we achieved an accuracy of 85.86% for Bangla-bert-base and 84.36% for mBERT. This is the first large-scale investigation of Bangla regional dialects to Bangla machine translation. We believe our findings will not only pave the way for future work on Bangla regional dialects to Bangla machine translation, but will also be useful in solving similar language-related challenges in low-resource language conditions.
Mitigating Pooling Bias in E-commerce Search via False Negative Estimation
Wang, Xiaochen, Xiao, Xiao, Zhang, Ruhan, Zhang, Xuan, Na, Taesik, Tenneti, Tejaswi, Wang, Haixun, Ma, Fenglong
Efficient and accurate product relevance assessment is critical for user experiences and business success. Training a proficient relevance assessment model requires high-quality query-product pairs, often obtained through negative sampling strategies. Unfortunately, current methods introduce pooling bias by mistakenly sampling false negatives, diminishing performance and business impact. To address this, we present Bias-mitigating Hard Negative Sampling (BHNS), a novel negative sampling strategy tailored to identify and adjust for false negatives, building upon our original False Negative Estimation algorithm. Our experiments in the Instacart search setting confirm BHNS as effective for practical e-commerce use. Furthermore, comparative analyses on public dataset showcase its domain-agnostic potential for diverse applications.
Pearl's and Jeffrey's Update as Modes of Learning in Probabilistic Programming
The concept of updating a probability distribution in the light of new evidence lies at the heart of statistics and machine learning. Pearl's and Jeffrey's rule are two natural update mechanisms which lead to different outcomes, yet the similarities and differences remain mysterious. This paper clarifies their relationship in several ways: via separate descriptions of the two update mechanisms in terms of probabilistic programs and sampling semantics, and via different notions of likelihood (for Pearl and for Jeffrey). Moreover, it is shown that Jeffrey's update rule arises via variational inference. In terms of categorical probability theory, this amounts to an analysis of the situation in terms of the behaviour of the multiset functor, extended to the Kleisli category of the distribution monad.
Outage Performance and Novel Loss Function for an ML-Assisted Resource Allocation: An Exact Analytical Framework
Simmons, Nidhi, Simmons, David E, Yacoub, Michel Daoud
We introduce a novel loss function to minimize the outage probability of an ML-based resource allocation system. A single-user multi-resource greedy allocation strategy constitutes our application scenario, for which an ML binary classification predictor assists in selecting a resource satisfying the established outage criterium. While other resource allocation policies may be suitable, they are not the focus of our study. Instead, our primary emphasis is on theoretically developing this loss function and leveraging it to train an ML model to address the outage probability challenge. With no access to future channel state information, this predictor foresees each resource's likely future outage status. When the predictor encounters a resource it believes will be satisfactory, it allocates it to the user. Our main result establishes exact and asymptotic expressions for this system's outage probability. These expressions reveal that focusing solely on the optimization of the per-resource outage probability conditioned on the ML predictor recommending resource allocation (a strategy that appears to be most appropriate) may produce inadequate predictors that reject every resource. They also reveal that focusing on standard metrics, like precision, false-positive rate, or recall, may not produce optimal predictors. With our result, we formulate a theoretically optimal, differentiable loss function to train our predictor. We then compare predictors trained using this and traditional loss functions namely, binary cross-entropy (BCE), mean squared error (MSE), and mean absolute error (MAE). In all scenarios, predictors trained using our novel loss function provide superior outage probability performance. Moreover, in some cases, our loss function outperforms predictors trained with BCE, MAE, and MSE by multiple orders of magnitude.
A Fair and In-Depth Evaluation of Existing End-to-End Entity Linking Systems
Bast, Hannah, Hertel, Matthias, Prange, Natalie
Existing evaluations of entity linking systems often say little about how the system is going to perform for a particular application. There are two fundamental reasons for this. One is that many evaluations only use aggregate measures (like precision, recall, and F1 score), without a detailed error analysis or a closer look at the results. The other is that all of the widely used benchmarks have strong biases and artifacts, in particular: a strong focus on named entities, an unclear or missing specification of what else counts as an entity mention, poor handling of ambiguities, and an over- or underrepresentation of certain kinds of entities. We provide a more meaningful and fair in-depth evaluation of a variety of existing end-to-end entity linkers. We characterize their strengths and weaknesses and also report on reproducibility aspects. The detailed results of our evaluation can be inspected under https://elevant.cs.uni-freiburg.de/emnlp2023 . Our evaluation is based on several widely used benchmarks, which exhibit the problems mentioned above to various degrees, as well as on two new benchmarks, which address the problems mentioned above. The new benchmarks can be found under https://github.com/ad-freiburg/fair-entity-linking-benchmarks .
INSPECT: A Multimodal Dataset for Pulmonary Embolism Diagnosis and Prognosis
Huang, Shih-Cheng, Huo, Zepeng, Steinberg, Ethan, Chiang, Chia-Chun, Lungren, Matthew P., Langlotz, Curtis P., Yeung, Serena, Shah, Nigam H., Fries, Jason A.
Synthesizing information from multiple data sources plays a crucial role in the practice of modern medicine. Current applications of artificial intelligence in medicine often focus on single-modality data due to a lack of publicly available, multimodal medical datasets. To address this limitation, we introduce INSPECT, which contains de-identified longitudinal records from a large cohort of patients at risk for pulmonary embolism (PE), along with ground truth labels for multiple outcomes. INSPECT contains data from 19,402 patients, including CT images, radiology report impression sections, and structured electronic health record (EHR) data (i.e. demographics, diagnoses, procedures, vitals, and medications). Using INSPECT, we develop and release a benchmark for evaluating several baseline modeling approaches on a variety of important PE related tasks. We evaluate image-only, EHR-only, and multimodal fusion models. Trained models and the de-identified dataset are made available for non-commercial use under a data use agreement. To the best of our knowledge, INSPECT is the largest multimodal dataset integrating 3D medical imaging and EHR for reproducible methods evaluation and research.
Classification Methods Based on Machine Learning for the Analysis of Fetal Health Data
Regmi, Binod, Shah, Chiranjibi
The persistent battle to decrease childhood mortality serves as a commonly employed benchmark for gauging advancements in the field of medicine. Globally, the under-5 mortality rate stands at approximately 5 million, with a significant portion of these deaths being avoidable. Given the significance of this problem, Machine learning-based techniques have emerged as a prominent tool for assessing fetal health. In this work, we have analyzed the classification performance of various machine learning models for fetal health analysis. Classification performance of various machine learning models, such as support vector machine (SVM), random forest(RF), and attentive interpretable tabular learning (TabNet) have been assessed on fetal health. Moreover, dimensionality reduction techniques, such as Principal component analysis (PCA) and Linear discriminant analysis (LDA) have been implemented to obtain better classification performance with less number of features. A TabNet model on a fetal health dataset provides a classification accuracy of 94.36%. In general, this technology empowers doctors and healthcare experts to achieve precise fetal health classification and identify the most influential features in the process.
WATUNet: A Deep Neural Network for Segmentation of Volumetric Sweep Imaging Ultrasound
Khaledyan, Donya, Marini, Thomas J., OConnell, Avice, Meng, Steven, Kan, Jonah, Brennan, Galen, Zhao, Yu, Baran, Timothy M., Parker, Kevin J.
Objective. Limited access to breast cancer diagnosis globally leads to delayed treatment. Ultrasound, an effective yet underutilized method, requires specialized training for sonographers, which hinders its widespread use. Approach. Volume sweep imaging (VSI) is an innovative approach that enables untrained operators to capture high-quality ultrasound images. Combined with deep learning, like convolutional neural networks (CNNs), it can potentially transform breast cancer diagnosis, enhancing accuracy, saving time and costs, and improving patient outcomes. The widely used UNet architecture, known for medical image segmentation, has limitations, such as vanishing gradients and a lack of multi-scale feature extraction and selective region attention. In this study, we present a novel segmentation model known as Wavelet_Attention_UNet (WATUNet). In this model, we incorporate wavelet gates (WGs) and attention gates (AGs) between the encoder and decoder instead of a simple connection to overcome the limitations mentioned, thereby improving model performance. Main results. Two datasets are utilized for the analysis. The public "Breast Ultrasound Images" (BUSI) dataset of 780 images and a VSI dataset of 3818 images. Both datasets contained segmented lesions categorized into three types: no mass, benign mass, and malignant mass. Our segmentation results show superior performance compared to other deep networks. The proposed algorithm attained a Dice coefficient of 0.94 and an F1 score of 0.94 on the VSI dataset and scored 0.93 and 0.94 on the public dataset, respectively.