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A Survey of Few-Shot Learning for Biomedical Time Series

arXiv.org Artificial Intelligence

Advancements in wearable sensor technologies and the digitization of medical records have contributed to the unprecedented ubiquity of biomedical time series data. Data-driven models have tremendous potential to assist clinical diagnosis and improve patient care by improving long-term monitoring capabilities, facilitating early disease detection and intervention, as well as promoting personalized healthcare delivery. However, accessing extensively labeled datasets to train data-hungry deep learning models encounters many barriers, such as long-tail distribution of rare diseases, cost of annotation, privacy and security concerns, data-sharing regulations, and ethical considerations. An emerging approach to overcome the scarcity of labeled data is to augment AI methods with human-like capabilities to leverage past experiences to learn new tasks with limited examples, called few-shot learning. This survey provides a comprehensive review and comparison of few-shot learning methods for biomedical time series applications. The clinical benefits and limitations of such methods are discussed in relation to traditional data-driven approaches. This paper aims to provide insights into the current landscape of few-shot learning for biomedical time series and its implications for future research and applications.


An Onboard Framework for Staircases Modeling Based on Point Clouds

arXiv.org Artificial Intelligence

The detection of traversable regions on staircases and the physical modeling constitutes pivotal aspects of the mobility of legged robots. This paper presents an onboard framework tailored to the detection of traversable regions and the modeling of physical attributes of staircases by point cloud data. To mitigate the influence of illumination variations and the overfitting due to the dataset diversity, a series of data augmentations are introduced to enhance the training of the fundamental network. A curvature suppression cross-entropy(CSCE) loss is proposed to reduce the ambiguity of prediction on the boundary between traversable and non-traversable regions. Moreover, a measurement correction based on the pose estimation of stairs is introduced to calibrate the output of raw modeling that is influenced by tilted perspectives. Lastly, we collect a dataset pertaining to staircases and introduce new evaluation criteria. Through a series of rigorous experiments conducted on this dataset, we substantiate the superior accuracy and generalization capabilities of our proposed method. Codes, models, and datasets will be available at https://github.com/szturobotics/Stair-detection-and-modeling-project.


Can We Identify Unknown Audio Recording Environments in Forensic Scenarios?

arXiv.org Artificial Intelligence

Audio recordings may provide important evidence in criminal investigations. One such case is the forensic association of the recorded audio to the recording location. For example, a voice message may be the only investigative cue to narrow down the candidate sites for a crime. Up to now, several works provide tools for closed-set recording environment classification under relatively clean recording conditions. However, in forensic investigations, the candidate locations are case-specific. Thus, closed-set tools are not applicable without retraining on a sufficient amount of training samples for each case and respective candidate set. In addition, a forensic tool has to deal with audio material from uncontrolled sources with variable properties and quality. In this work, we therefore attempt a major step towards practical forensic application scenarios. We propose a representation learning framework called EnvId, short for environment identification. EnvId avoids case-specific retraining. Instead, it is the first tool for robust few-shot classification of unseen environment locations. We demonstrate that EnvId can handle forensically challenging material. It provides good quality predictions even under unseen signal degradations, environment characteristics or recording position mismatches. Our code and datasets will be made publicly available upon acceptance.


SlotGAT: Slot-based Message Passing for Heterogeneous Graph Neural Network

arXiv.org Artificial Intelligence

Heterogeneous graphs are ubiquitous to model complex data. There are urgent needs on powerful heterogeneous graph neural networks to effectively support important applications. We identify a potential semantic mixing issue in existing message passing processes, where the representations of the neighbors of a node $v$ are forced to be transformed to the feature space of $v$ for aggregation, though the neighbors are in different types. That is, the semantics in different node types are entangled together into node $v$'s representation. To address the issue, we propose SlotGAT with separate message passing processes in slots, one for each node type, to maintain the representations in their own node-type feature spaces. Moreover, in a slot-based message passing layer, we design an attention mechanism for effective slot-wise message aggregation. Further, we develop a slot attention technique after the last layer of SlotGAT, to learn the importance of different slots in downstream tasks. Our analysis indicates that the slots in SlotGAT can preserve different semantics in various feature spaces. The superiority of SlotGAT is evaluated against 13 baselines on 6 datasets for node classification and link prediction. Our code is at https://github.com/scottjiao/SlotGAT_ICML23/.


Prediction of Space Weather Events through Analysis of Active Region Magnetograms using Convolutional Neural Network

arXiv.org Artificial Intelligence

Although space weather events may not directly affect human life, they have the potential to inflict significant harm upon our communities. Harmful space weather events can trigger atmospheric changes that result in physical and economic damages on a global scale. In 1989, Earth experienced the effects of a powerful geomagnetic storm that caused satellites to malfunction, while triggering power blackouts in Canada, along with electricity disturbances in the United States and Europe. With the solar cycle peak rapidly approaching, there is an ever-increasing need to prepare and prevent the damages that can occur, especially to modern-day technology, calling for the need of a comprehensive prediction system. This study aims to leverage machine learning techniques to predict instances of space weather (solar flares, coronal mass ejections, geomagnetic storms), based on active region magnetograms of the Sun. This was done through the use of the NASA DONKI service to determine when these solar events occur, then using data from the NASA Solar Dynamics Observatory to compile a dataset that includes magnetograms of active regions of the Sun 24 hours before the events. By inputting the magnetograms into a convolutional neural network (CNN) trained from this dataset, it can serve to predict whether a space weather event will occur, and what type of event it will be. The model was designed using a custom architecture CNN, and returned an accuracy of 90.27%, a precision of 85.83%, a recall of 91.78%, and an average F1 score of 92.14% across each class (Solar flare [Flare], geomagnetic storm [GMS], coronal mass ejection [CME]). Our results show that using magnetogram data as an input for a CNN is a viable method to space weather prediction. Future work can involve prediction of the magnitude of solar events.


Fair Risk Control: A Generalized Framework for Calibrating Multi-group Fairness Risks

arXiv.org Machine Learning

A common theme across the fairness in machine learning literature is that some measure of error or risk should be equalized across sub-populations. Common measures evaluated across demographic groups include false positive and false negative rates (Hardt et al., 2016) and calibration error (Kleinberg et al., 2016; Chouldechova, 2017). Initial work in this line gave methods for equalizing different risk measures on disjoint groups. A second generation of work gave methods for equalizing measures of risk across groups even when the groups could intersect - e.g. for false positive and negative rates (Kearns et al., 2018), calibration error (Úrsula Hébert-Johnson et al., 2018), regret (Blum & Lykouris, 2019; Rothblum & Yona, 2021), prediction set coverage (Jung et al., 2021, 2022; Deng et al., 2023), among other risk measures. In general, distinct algorithms are derived for each of these settings, and they are generally limited to one-dimensional predictors of various sorts. In this work, we propose a unifying framework for fair risk control in settings with multi-dimensional outputs, based on multicalibration (Úrsula Hébert-Johnson et al., 2018). This framework is developed as an extension of the work by Deng et al. (2023); Noarov & Roth (2023), and addresses the need for calibrating multi-dimensional output functions. To illustrate the usefulness of this framework, we apply it to a variety of settings, including false negative rate control in image segmentation, prediction set conditional coverage guarantees in hierarchical classification, and de-biased text generation in language models. These applications make use of the additional power granted by our multi-dimensional extension of multicalibration.


TextAge: A Curated and Diverse Text Dataset for Age Classification

arXiv.org Artificial Intelligence

Age-related language patterns play a crucial role in understanding linguistic differences and developing age-appropriate communication strategies. However, the lack of comprehensive and diverse datasets has hindered the progress of research in this area. To address this issue, we present TextAge, a curated text dataset that maps sentences to the age and age group of the producer, as well as an underage (under 13) label. TextAge covers a wide range of ages and includes both spoken and written data from various sources such as CHILDES, Meta, Poki Poems-by-kids, JUSThink, and the TV show "Survivor." The dataset undergoes extensive cleaning and preprocessing to ensure data quality and consistency. We demonstrate the utility of TextAge through two applications: Underage Detection and Generational Classification. For Underage Detection, we train a Naive Bayes classifier, fine-tuned RoBERTa, and XLNet models to differentiate between language patterns of minors and young-adults and over. For Generational Classification, the models classify language patterns into different age groups (kids, teens, twenties, etc.). The models excel at classifying the "kids" group but struggle with older age groups, particularly "fifties," "sixties," and "seventies," likely due to limited data samples and less pronounced linguistic differences. TextAge offers a valuable resource for studying age-related language patterns and developing age-sensitive language models. The dataset's diverse composition and the promising results of the classification tasks highlight its potential for various applications, such as content moderation, targeted advertising, and age-appropriate communication. Future work aims to expand the dataset further and explore advanced modeling techniques to improve performance on older age groups.


Exploring Speech Pattern Disorders in Autism using Machine Learning

arXiv.org Artificial Intelligence

Diagnosing autism spectrum disorder (ASD) by identifying abnormal speech patterns from examiner-patient dialogues presents significant challenges due to the subtle and diverse manifestations of speech-related symptoms in affected individuals. This study presents a comprehensive approach to identify distinctive speech patterns through the analysis of examiner-patient dialogues. Utilizing a dataset of recorded dialogues, we extracted 40 speech-related features, categorized into frequency, zero-crossing rate, energy, spectral characteristics, Mel Frequency Cepstral Coefficients (MFCCs), and balance. These features encompass various aspects of speech such as intonation, volume, rhythm, and speech rate, reflecting the complex nature of communicative behaviors in ASD. We employed machine learning for both classification and regression tasks to analyze these speech features. The classification model aimed to differentiate between ASD and non-ASD cases, achieving an accuracy of 87.75%. Regression models were developed to predict speech pattern related variables and a composite score from all variables, facilitating a deeper understanding of the speech dynamics associated with ASD. The effectiveness of machine learning in interpreting intricate speech patterns and the high classification accuracy underscore the potential of computational methods in supporting the diagnostic processes for ASD. This approach not only aids in early detection but also contributes to personalized treatment planning by providing insights into the speech and communication profiles of individuals with ASD.


Enhancing User Experience in On-Device Machine Learning with Gated Compression Layers

arXiv.org Artificial Intelligence

On-device machine learning (ODML) enables powerful edge applications, but power consumption remains a key challenge for resource-constrained devices. To address this, developers often face a trade-off between model accuracy and power consumption, employing either computationally intensive models on high-power cores or pared-down models on low-power cores. Both approaches typically lead to a compromise in user experience (UX). This work focuses on the use of Gated Compression (GC) layer to enhance ODML model performance while conserving power and maximizing cost-efficiency, especially for always-on use cases. GC layers dynamically regulate data flow by selectively gating activations of neurons within the neural network and effectively filtering out non-essential inputs, which reduces power needs without compromising accuracy, and enables more efficient execution on heterogeneous compute cores. These improvements enhance UX through prolonged battery life, improved device responsiveness, and greater user comfort. In this work, we have integrated GC layers into vision and speech domain models including the transformer-based ViT model. Our experiments demonstrate theoretical power efficiency gains ranging from 158x to 30,000x for always-on scenarios. This substantial improvement empowers ODML applications with enhanced UX benefits.


Advancing human-centric AI for robust X-ray analysis through holistic self-supervised learning

arXiv.org Artificial Intelligence

AI Foundation models are gaining traction in various applications, including medical fields like radiology. However, medical foundation models are often tested on limited tasks, leaving their generalisability and biases unexplored. We present RayDINO, a large visual encoder trained by self-supervision on 873k chest X-rays. We compare RayDINO to previous state-of-the-art models across nine radiology tasks, from classification and dense segmentation to text generation, and provide an in depth analysis of population, age and sex biases of our model. Our findings suggest that self-supervision allows patient-centric AI proving useful in clinical workflows and interpreting X-rays holistically. With RayDINO and small task-specific adapters, we reach state-of-the-art results and improve generalization to unseen populations while mitigating bias, illustrating the true promise of foundation models: versatility and robustness.