Long non-coding RNAs (lncRNAs) serve as crucial regulators in numerous biological processes. Although they share sequence similarities with messenger RNAs (mRNAs), lncRNAs perform entirely different roles, providing new avenues for biological research. The emergence of next-generation sequencing technologies has greatly advanced the detection and identification of lncRNA transcripts and deep learning-based approaches have been introduced to classify long non-coding RNAs (lncRNAs). These advanced methods have significantly enhanced the efficiency of identifying lncRNAs. However, many of these methods are devoid of robustness and accuracy due to the extended length of the sequences involved. To tackle this issue, we have introduced a novel pre-trained bidirectional encoder representation called LoRA-BERT. LoRA-BERT is designed to capture the importance of nucleotide-level information during sequence classification, leading to more robust and satisfactory outcomes. In a comprehensive comparison with commonly used sequence prediction tools, we have demonstrated that LoRA-BERT outperforms them in terms of accuracy and efficiency. Our results indicate that, when utilizing the transformer model, LoRA-BERT achieves state-of-the-art performance in predicting both lncRNAs and mRNAs for human and mouse species. Through the utilization of LoRA-BERT, we acquire valuable insights into the traits of lncRNAs and mRNAs, offering the potential to aid in the comprehension and detection of diseases linked to lncRNAs in humans.

Fibre optic communication system is expected to increase exponentially in terms of application due to the numerous advantages over copper wires. The optical network evolution presents several advantages such as over long-distance, low-power requirement, higher carrying capacity and high bandwidth among others Such network bandwidth surpasses methods of transmission that include copper cables and microwaves. Despite these benefits, free-space optical communications are severely impacted by harsh weather situations like mist, precipitation, blizzard, fume, soil, and drizzle debris in the atmosphere, all of which have an impact on the Quality of Service (QoS) rendered by the systems. The primary goal of this article is to optimize the QoS using the ensemble learning models Random Forest, ADaBoost Regression, Stacking Regression, Gradient Boost Regression, and Multilayer Neural Network. To accomplish the stated goal, meteorological data, visibility, wind speed, and altitude were obtained from the South Africa Weather Services archive during a ten-year period (2010 to 2019) at four different locations: Polokwane, Kimberley, Bloemfontein, and George. We estimated the data rate, power received, fog-induced attenuation, bit error rate and power penalty using the collected and processed data. The RMSE and R-squared values of the model across all the study locations, Polokwane, Kimberley, Bloemfontein, and George, are 0.0073 and 0.9951, 0.0065 and 0.9998, 0.0060 and 0.9941, and 0.0032 and 0.9906, respectively. The result showed that using ensemble learning techniques in transmission modeling can significantly enhance service quality and meet customer service level agreements and ensemble method was successful in efficiently optimizing the signal to noise ratio, which in turn enhanced the QoS at the point of reception.

Phishing attacks remain a persistent threat to online security, demanding robust detection methods. This study investigates the use of machine learning to identify phishing URLs, emphasizing the crucial role of feature selection and model interpretability for improved performance. Employing Recursive Feature Elimination, the research pinpointed key features like "length_url," "time_domain_activation" and "Page_rank" as strong indicators of phishing attempts. The study evaluated various algorithms, including CatBoost, XGBoost, and Explainable Boosting Machine, assessing their robustness and scalability. XGBoost emerged as highly efficient in terms of runtime, making it well-suited for large datasets. CatBoost, on the other hand, demonstrated resilience by maintaining high accuracy even with reduced features. To enhance transparency and trustworthiness, Explainable AI techniques, such as SHAP, were employed to provide insights into feature importance. The study's findings highlight that effective feature selection and model interpretability can significantly bolster phishing detection systems, paving the way for more efficient and adaptable defenses against evolving cyber threats

This paper presents a detailed system description of our entry for the CHiPSAL 2025 shared task, focusing on language detection, hate speech identification, and target detection in Devanagari script languages. We experimented with a combination of large language models and their ensembles, including MuRIL, IndicBERT, and Gemma-2, and leveraged unique techniques like focal loss to address challenges in the natural understanding of Devanagari languages, such as multilingual processing and class imbalance. Our approach achieved competitive results across all tasks: F1 of 0.9980, 0.7652, and 0.6804 for Sub-tasks A, B, and C respectively. This work provides insights into the effectiveness of transformer models in tasks with domain-specific and linguistic challenges, as well as areas for potential improvement in future iterations.

Discovering new superionic materials is essential for advancing solid-state batteries, which offer improved energy density and safety compared to the traditional lithium-ion batteries with liquid electrolytes. Conventional computational methods for identifying such materials are resource-intensive and not easily scalable. Recently, universal interatomic potential models have been developed using equivariant graph neural networks. These models are trained on extensive datasets of first-principles force and energy calculations. One can achieve significant computational advantages by leveraging them as the foundation for traditional methods of assessing the ionic conductivity, such as molecular dynamics or nudged elastic band techniques. However, the generalization error from model inference on diverse atomic structures arising in such calculations can compromise the reliability of the results. In this work, we propose an approach for the quick and reliable evaluation of ionic conductivity through the analysis of a universal interatomic potential. Our method incorporates a set of heuristic structure descriptors that effectively employ the rich knowledge of the underlying model while requiring minimal generalization capabilities. Using our descriptors, we rank lithium-containing materials in the Materials Project database according to their expected ionic conductivity. Eight out of the ten highest-ranked materials are confirmed to be superionic at room temperature in first-principles calculations. Notably, our method achieves a speed-up factor of approximately 50 compared to molecular dynamics driven by a machine-learning potential, and is at least 3,000 times faster compared to first-principles molecular dynamics.

Semantic Simultaneous Localization and Mapping (SLAM) systems struggle to map semantically similar objects in close proximity, especially in cluttered indoor environments. We introduce Semantic Enhancement for Object SLAM (SEO-SLAM), a novel SLAM system that leverages Vision-Language Models (VLMs) and Multimodal Large Language Models (MLLMs) to enhance object-level semantic mapping in such environments. SEO-SLAM tackles existing challenges by (1) generating more specific and descriptive open-vocabulary object labels using MLLMs, (2) simultaneously correcting factors causing erroneous landmarks, and (3) dynamically updating a multiclass confusion matrix to mitigate object detector biases. Our approach enables more precise distinctions between similar objects and maintains map coherence by reflecting scene changes through MLLM feedback. We evaluate SEO-SLAM on our challenging dataset, demonstrating enhanced accuracy and robustness in environments with multiple similar objects. Our system outperforms existing approaches in terms of landmark matching accuracy and semantic consistency. Results show the feedback from MLLM improves object-centric semantic mapping. Our dataset is publicly available at: jungseokhong.com/SEO-SLAM.

Recent rapid advancements of machine learning have greatly enhanced the accuracy of prediction models, but most models remain "black boxes", making prediction error diagnosis challenging, especially with outliers. This lack of transparency hinders trust and reliability in industrial applications. Heuristic attribution methods, while helpful, often fail to capture true causal relationships, leading to inaccurate error attributions. Various root-cause analysis methods have been developed using Shapley values, yet they typically require predefined causal graphs, limiting their applicability for prediction errors in machine learning models. To address these limitations, we introduce the Causal-Discovery-based Root-Cause Analysis (CD-RCA) method that estimates causal relationships between the prediction error and the explanatory variables, without needing a pre-defined causal graph. By simulating synthetic error data, CD-RCA can identify variable contributions to outliers in prediction errors by Shapley values. Extensive simulations show CD-RCA outperforms current heuristic attribution methods, and a sensitivity analysis reveals new patterns where Shapley values may misattribute errors, paving the way for more accurate error attribution methods.

Breast cancer detection is still an open research field, despite a tremendous effort devoted to work in this area. Effect size is a statistical concept that measures the strength of the relationship between two variables on a numeric scale. Feature selection is widely used to reduce the dimensionality of data by selecting only a subset of predictor variables to improve a learning model. In this work, an algorithm and experimental results demonstrate the feasibility of developing a statistical featureselector-based learning tool capable of reducing the data dimensionality using parametric effect size measures from features extracted from cell nuclei images. The SVM classifier with a linear kernel as a learning tool achieved an accuracy of over 90%. These excellent results suggest that the effect size is within the standards of the feature-selector methods. Keywords: Effect Size Cohen's d Standardized Mean Difference Feature selection Breast Cancer

The Learning-to-Defer approach has been explored for classification and, more recently, regression tasks separately. Many contemporary learning tasks, however, involves both classification and regression components. In this paper, we introduce a Learning-to-Defer approach for multi-task learning that encompasses both classification and regression tasks. Our two-stage approach utilizes a rejector that defers decisions to the most accurate agent among a pre-trained joint classifier-regressor models and one or more external experts. We show that our surrogate loss is $(\mathcal{H}, \mathcal{F}, \mathcal{R})$ and Bayes--consistent, ensuring an effective approximation of the optimal solution. Additionally, we derive learning bounds that demonstrate the benefits of employing multiple confident experts along a rich model in a two-stage learning framework. Empirical experiments conducted on electronic health record analysis tasks underscore the performance enhancements achieved through our method.

As the field of quantum physics evolves, researchers naturally form subgroups focusing on specialized problems. While this encourages in-depth exploration, it can limit the exchange of ideas across structurally similar problems in different subfields. To encourage cross-talk among these different specialized areas, data-driven approaches using machine learning have recently shown promise to uncover meaningful connections between research concepts, promoting cross-disciplinary innovation. Current state-of-the-art approaches represent concepts using knowledge graphs and frame the task as a link prediction problem, where connections between concepts are explicitly modeled. In this work, we introduce a novel approach based on dynamic word embeddings for concept combination prediction. Unlike knowledge graphs, our method captures implicit relationships between concepts, can be learned in a fully unsupervised manner, and encodes a broader spectrum of information. We demonstrate that this representation enables accurate predictions about the co-occurrence of concepts within research abstracts over time. To validate the effectiveness of our approach, we provide a comprehensive benchmark against existing methods and offer insights into the interpretability of these embeddings, particularly in the context of quantum physics research. Our findings suggest that this representation offers a more flexible and informative way of modeling conceptual relationships in scientific literature.