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LoRA-BAM: Input Filtering for Fine-tuned LLMs via Boxed Abstraction Monitors over LoRA Layers

arXiv.org Artificial Intelligence

Fine-tuning large language models (LLMs) improves performance on domain-specific tasks but can lead to overfitting, making them unreliable on out-of-distribution (OoD) queries. We propose LoRA-BAM - a method that adds OoD detection monitors to the LoRA layer using boxed abstraction to filter questions beyond the model's competence. Feature vectors from the fine-tuning data are extracted via the LLM and clustered. Clusters are enclosed in boxes; a question is flagged as OoD if its feature vector falls outside all boxes. To improve interpretability and robustness, we introduce a regularization loss during fine-tuning that encourages paraphrased questions to stay close in the feature space, and the enlargement of the decision boundary is based on the feature variance within a cluster. Our method complements existing defenses by providing lightweight and interpretable OoD detection.


Uncertainty-Aware Metabolic Stability Prediction with Dual-View Contrastive Learning

arXiv.org Artificial Intelligence

Accurate prediction of molecular metabolic stability (MS) is critical for drug research and development but remains challenging due to the complex interplay of molecular interactions. Despite recent advances in graph neural networks (GNNs) for MS prediction, current approaches face two critical limitations: (1) incomplete molecular modeling due to atom-centric message-passing mechanisms that disregard bond-level topological features, and (2) prediction frameworks that lack reliable uncertainty quantification. To address these challenges, we propose TrustworthyMS, a novel contrastive learning framework designed for uncertainty-aware metabolic stability prediction. First, a molecular graph topology remapping mechanism synchronizes atom-bond interactions through edge-induced feature propagation, capturing both localized electronic effects and global conformational constraints. Second, contrastive topology-bond alignment enforces consistency between molecular topology views and bond patterns via feature alignment, enhancing representation robustness. Third, uncertainty modeling through Beta-Binomial uncertainty quantification enables simultaneous prediction and confidence calibration under epistemic uncertainty. Through extensive experiments, our results demonstrate that TrustworthyMS outperforms current state-of-the-art methods in terms of predictive performance.


Common Inpainted Objects In-N-Out of Context

arXiv.org Artificial Intelligence

We present Common Inpainted Objects In-N-Out of Context (COinCO), a novel dataset addressing the scarcity of out-of-context examples in existing vision datasets. By systematically replacing objects in COCO images through diffusion-based inpainting, we create 97,722 unique images featuring both contextually coherent and inconsistent scenes, enabling effective context learning. Each inpainted object is meticulously verified and categorized as in- or out-of-context through a multimodal large language model assessment. Our analysis reveals significant patterns in semantic priors that influence inpainting success across object categories. We demonstrate three key tasks enabled by COinCO: (1) training context classifiers that effectively determine whether existing objects belong in their context; (2) a novel Objects-from-Context prediction task that determines which new objects naturally belong in given scenes at both instance and clique levels, and (3) context-enhanced fake detection on state-of-the-art methods without fine-tuning. COinCO provides a controlled testbed with contextual variations, establishing a foundation for advancing context-aware visual understanding in computer vision and image forensics. Our code and data are at: https://github.com/YangTianze009/COinCO.


Uncertainty-Aware Genomic Classification of Alzheimer's Disease: A Transformer-Based Ensemble Approach with Monte Carlo Dropout

arXiv.org Artificial Intelligence

INTRODUCTION: Alzheimer's disease (AD) is genetically complex, complicating robust classification from genomic data. METHODS: We developed a transformer-based ensemble model (TrUE-Net) using Monte Carlo Dropout for uncertainty estimation in AD classification from whole-genome sequencing (WGS). We combined a transformer that preserves single-nucleotide polymorphism (SNP) sequence structure with a concurrent random forest using flattened genotypes. An uncertainty threshold separated samples into an uncertain (high-variance) group and a more certain (low-variance) group. RESULTS: We analyzed 1050 individuals, holding out half for testing. Overall accuracy and area under the receiver operating characteristic (ROC) curve (AUC) were 0.6514 and 0.6636, respectively. Excluding the uncertain group improved accuracy from 0.6263 to 0.7287 (10.24% increase) and F1 from 0.5843 to 0.8205 (23.62% increase). DISCUSSION: Monte Carlo Dropout-driven uncertainty helps identify ambiguous cases that may require further clinical evaluation, thus improving reliability in AD genomic classification.


Is Your Explanation Reliable: Confidence-Aware Explanation on Graph Neural Networks

arXiv.org Artificial Intelligence

Explaining Graph Neural Networks (GNNs) has garnered significant attention due to the need for interpretability, enabling users to understand the behavior of these black-box models better and extract valuable insights from their predictions. While numerous post-hoc instance-level explanation methods have been proposed to interpret GNN predictions, the reliability of these explanations remains uncertain, particularly in the out-of-distribution or unknown test datasets. In this paper, we address this challenge by introducing an explainer framework with the confidence scoring module ( ConfExplainer), grounded in theoretical principle, which is generalized graph information bottleneck with confidence constraint (GIB-CC), that quantifies the reliability of generated explanations. Experimental results demonstrate the superiority of our approach, highlighting the effectiveness of the confidence score in enhancing the trustworthiness and robustness of GNN explanations.


A New Spatiotemporal Correlation Anomaly Detection Method that Integrates Contrastive Learning and Few-Shot Learning in Wireless Sensor Networks

arXiv.org Artificial Intelligence

Detecting anomalies in the data collected by WSNs can provide crucial evidence for assessing the reliability and stability of WSNs. Existing methods for WSN anomaly detection often face challenges such as the limited extraction of spatiotemporal correlation features, the absence of sample labels, few anomaly samples, and an imbalanced sample distribution. To address these issues, a spatiotemporal correlation detection model (MTAD-RD) considering both model architecture and a two-stage training strategy perspective is proposed. In terms of model structure design, the proposed MTAD-RD backbone network includes a retentive network (RetNet) enhanced by a cross-retention (CR) module, a multigranular feature fusion module, and a graph attention network module to extract internode correlation information. This proposed model can integrate the intermodal correlation features and spatial features of WSN neighbor nodes while extracting global information from time series data. Moreover, its serialized inference characteristic can remarkably reduce inference overhead. For model training, a two-stage training approach was designed. First, a contrastive learning proxy task was designed for time series data with graph structure information in WSNs, enabling the backbone network to learn transferable features from unlabeled data using unsupervised contrastive learning methods, thereby addressing the issue of missing sample labels in the dataset. Then, a caching-based sample sampler was designed to divide samples into few-shot and contrastive learning data. A specific joint loss function was developed to jointly train the dual-graph discriminator network to address the problem of sample imbalance effectively. In experiments carried out on real public datasets, the designed MTAD-RD anomaly detection method achieved an F1 score of 90.97%, outperforming existing supervised WSN anomaly detection methods.


The iNaturalist Sounds Dataset

arXiv.org Artificial Intelligence

We present the iNaturalist Sounds Dataset (iNatSounds), a collection of 230,000 audio files capturing sounds from over 5,500 species, contributed by more than 27,000 recordists worldwide. The dataset encompasses sounds from birds, mammals, insects, reptiles, and amphibians, with audio and species labels derived from observations submitted to iNaturalist, a global citizen science platform. Each recording in the dataset varies in length and includes a single species annotation. We benchmark multiple backbone architectures, comparing multiclass classification objectives with multilabel objectives. Despite weak labeling, we demonstrate that iNatSounds serves as a useful pretraining resource by benchmarking it on strongly labeled downstream evaluation datasets. The dataset is available as a single, freely accessible archive, promoting accessibility and research in this important domain. We envision models trained on this data powering next-generation public engagement applications, and assisting biologists, ecologists, and land use managers in processing large audio collections, thereby contributing to the understanding of species compositions in diverse soundscapes.


SkillVerse : Assessing and Enhancing LLMs with Tree Evaluation

arXiv.org Artificial Intelligence

As language models evolve to tackle complex, multifaceted tasks, their evaluation must adapt to capture this intricacy. A granular, skill-specific understanding of model capabilities can empower researchers to make informed model development plans. In this paper, we introduce SkillVerse, an unsupervised tree-structured diagnosis framework for understanding model proficiency in specific abilities. With LLM as a judge, SkillVerse first critiques the model responses, and then organizes them into a hierarchical structure termed dendrogram. Given proficiency at arbitrary levels of granularity, SkillVerse is flexible to produce insights of behaviors of modern large models. We also demonstrate its efficacy in two downstream tasks: 1) improving model in-context learning by 25% using a tree-search algorithm to select more informative few-shot demonstrations, and 2) accurately predicting new model weaknesses with a 55% success rate, 22% higher than without SkillVerse.


TabXEval: Why this is a Bad Table? An eXhaustive Rubric for Table Evaluation

arXiv.org Artificial Intelligence

Evaluating tables qualitatively and quantitatively poses a significant challenge, as standard metrics often overlook subtle structural and content-level discrepancies. To address this, we propose a rubric-based evaluation framework that integrates multi-level structural descriptors with fine-grained contextual signals, enabling more precise and consistent table comparison. Building on this, we introduce TabXEval, an eXhaustive and eXplainable two-phase evaluation framework. TabXEval first aligns reference and predicted tables structurally via TabAlign, then performs semantic and syntactic comparison using TabCompare, offering interpretable and granular feedback. We evaluate TabXEval on TabXBench, a diverse, multi-domain benchmark featuring realistic table perturbations and human annotations. A sensitivity-specificity analysis further demonstrates the robustness and explainability of TabXEval across varied table tasks. Code and data are available at https://coral-lab-asu.github.io/tabxeval/