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UTSA-NLP at ArchEHR-QA 2025: Improving EHR Question Answering via Self-Consistency Prompting

arXiv.org Artificial Intelligence

We describe our system for the ArchEHR-QA Shared Task on answering clinical questions using electronic health records (EHRs). Our approach uses large language models in two steps: first, to find sentences in the EHR relevant to a clinician's question, and second, to generate a short, citation-supported response based on those sentences. We use few-shot prompting, self-consistency, and thresholding to improve the sentence classification step to decide which sentences are essential. We compare several models and find that a smaller 8B model performs better than a larger 70B model for identifying relevant information. Our results show that accurate sentence selection is critical for generating high-quality responses and that self-consistency with thresholding helps make these decisions more reliable.


DART-Vetter: A Deep LeARning Tool for automatic triage of exoplanet candidates

arXiv.org Artificial Intelligence

In the identification of new planetary candidates in transit surveys, the employment of Deep Learning models proved to be essential to efficiently analyse a continuously growing volume of photometric observations. To further improve the robustness of these models, it is necessary to exploit the complementarity of data collected from different transit surveys such as NASA's Kepler, Transiting Exoplanet Survey Satellite (TESS), and, in the near future, the ESA PLAnetary Transits and Oscillation of stars (PLATO) mission. In this work, we present a Deep Learning model, named DART-Vetter, able to distinguish planetary candidates (PC) from false positives signals (NPC) detected by any potential transiting survey. DART-Vetter is a Convolutional Neural Network that processes only the light curves folded on the period of the relative signal, featuring a simpler and more compact architecture with respect to other triaging and/or vetting models available in the literature. We trained and tested DART-Vetter on several dataset of publicly available and homogeneously labelled TESS and Kepler light curves in order to prove the effectiveness of our model. Despite its simplicity, DART-Vetter achieves highly competitive triaging performance, with a recall rate of 91% on an ensemble of TESS and Kepler data, when compared to Exominer and Astronet-Triage. Its compact, open source and easy to replicate architecture makes DART-Vetter a particularly useful tool for automatizing triaging procedures or assisting human vetters, showing a discrete generalization on TCEs with Multiple Event Statistic (MES) > 20 and orbital period < 50 days.


StealthInk: A Multi-bit and Stealthy Watermark for Large Language Models

arXiv.org Artificial Intelligence

Watermarking for large language models (LLMs) offers a promising approach to identifying AI-generated text. Existing approaches, however, either compromise the distribution of original generated text by LLMs or are limited to embedding zero-bit information that only allows for watermark detection but ignores identification. We present StealthInk, a stealthy multi-bit watermarking scheme that preserves the original text distribution while enabling the embedding of provenance data, such as userID, TimeStamp, and modelID, within LLM-generated text. This enhances fast traceability without requiring access to the language model's API or prompts. We derive a lower bound on the number of tokens necessary for watermark detection at a fixed equal error rate, which provides insights on how to enhance the capacity. Comprehensive empirical evaluations across diverse tasks highlight the stealthiness, detectability, and resilience of StealthInk, establishing it as an effective solution for LLM watermarking applications.


Sentiment Analysis in Learning Management Systems Understanding Student Feedback at Scale

arXiv.org Artificial Intelligence

During the wake of the Covid-19 pandemic, the educational paradigm has experienced a major change from in person learning traditional to online platforms. The change of learning convention has impacted the teacher-student especially in non-verbal communication. The absent of non-verbal communication has led to a reliance on verbal feedback which diminished the efficacy of the educational experience. This paper explores the integration of sentiment analysis into learning management systems (LMS) to bridge the student-teacher's gap by offering an alternative approach to interpreting student feedback beyond its verbal context. The research involves data preparation, feature selection, and the development of a deep neural network model encompassing word embedding, LSTM, and attention mechanisms. This model is compared against a logistic regression baseline to evaluate its efficacy in understanding student feedback. The study aims to bridge the communication gap between instructors and students in online learning environments, offering insights into the emotional context of student feedback and ultimately improving the quality of online education.


Diffusion with a Linguistic Compass: Steering the Generation of Clinically Plausible Future sMRI Representations for Early MCI Conversion Prediction

arXiv.org Artificial Intelligence

Early prediction of Mild Cognitive Impairment (MCI) conversion is hampered by a trade-off between immediacy--making fast predictions from a single baseline sMRI--and accuracy--leveraging longitudinal scans to capture disease progression. We propose MCI-Diff, a diffusion-based framework that synthesizes clinically plausible future sMRI representations directly from baseline data, achieving both real-time risk assessment and high predictive performance. First, a multi-task sequence reconstruction strategy trains a shared denoising network on interpolation and extrapolation tasks to handle irregular follow-up sampling and learn robust latent trajectories. Second, an LLM-driven "linguistic compass" is introduced for clinical plausibility sampling: generated feature candidates are quantized, tokenized, and scored by a fine-tuned language model conditioned on expected structural biomarkers, guiding autoregressive generation toward realistic disease patterns. Experiments on ADNI and AIBL cohorts show that MCI-Diff outperforms state-of-the-art baselines, improving early conversion accuracy by 5-12%.


Auto Review: Second Stage Error Detection for Highly Accurate Information Extraction from Phone Conversations

arXiv.org Artificial Intelligence

Automating benefit verification phone calls saves time in healthcare and helps patients receive treatment faster. It is critical to obtain highly accurate information in these phone calls, as it can affect a patient's healthcare journey. Given the noise in phone call transcripts, we have a two-stage system that involves a post-call review phase for potentially noisy fields, where human reviewers manually verify the extracted data$\unicode{x2013}$a labor-intensive task. To automate this stage, we introduce Auto Review, which significantly reduces manual effort while maintaining a high bar for accuracy. This system, being highly reliant on call transcripts, suffers a performance bottleneck due to automatic speech recognition (ASR) issues. This problem is further exacerbated by the use of domain-specific jargon in the calls. In this work, we propose a second-stage postprocessing pipeline for accurate information extraction. We improve accuracy by using multiple ASR alternatives and a pseudo-labeling approach that does not require manually corrected transcripts. Experiments with general-purpose large language models and feature-based model pipelines demonstrate substantial improvements in the quality of corrected call transcripts, thereby enhancing the efficiency of Auto Review.


Predicting ICU In-Hospital Mortality Using Adaptive Transformer Layer Fusion

arXiv.org Artificial Intelligence

Early identification of high-risk ICU patients is crucial for directing limited medical resources. We introduce ALFIA (Adaptive Layer Fusion with Intelligent Attention), a modular, attention-based architecture that jointly trains LoRA (Low-Rank Adaptation) adapters and an adaptive layer-weighting mechanism to fuse multi-layer semantic features from a BERT backbone. Trained on our rigorous cw-24 (CriticalWindow-24) benchmark, ALFIA surpasses state-of-the-art tabular classifiers in AUPRC while preserving a balanced precision-recall profile. The embeddings produced by ALFIA's fusion module, capturing both fine-grained clinical cues and high-level concepts, enable seamless pairing with GBDTs (CatBoost/LightGBM) as ALFIA-boost, and deep neuro networks as ALFIA-nn, yielding additional performance gains. Our experiments confirm ALFIA's superior early-warning performance, by operating directly on routine clinical text, it furnishes clinicians with a convenient yet robust tool for risk stratification and timely intervention in critical-care settings.


LGAR: Zero-Shot LLM-Guided Neural Ranking for Abstract Screening in Systematic Literature Reviews

arXiv.org Artificial Intelligence

The scientific literature is growing rapidly, making it hard to keep track of the state-of-the-art. Systematic literature reviews (SLRs) aim to identify and evaluate all relevant papers on a topic. After retrieving a set of candidate papers, the abstract screening phase determines initial relevance. To date, abstract screening methods using large language models (LLMs) focus on binary classification settings; existing question answering (QA) based ranking approaches suffer from error propagation. LLMs offer a unique opportunity to evaluate the SLR's inclusion and exclusion criteria, yet, existing benchmarks do not provide them exhaustively. We manually extract these criteria as well as research questions for 57 SLRs, mostly in the medical domain, enabling principled comparisons between approaches. Moreover, we propose LGAR, a zero-shot LLM Guided Abstract Ranker composed of an LLM based graded relevance scorer and a dense re-ranker. Our extensive experiments show that LGAR outperforms existing QA-based methods by 5-10 pp. in mean average precision. Our code and data is publicly available.


Unsupervised Latent Pattern Analysis for Estimating Type 2 Diabetes Risk in Undiagnosed Populations

arXiv.org Artificial Intelligence

The global prevalence of diabetes, particularly type 2 diabetes mellitus (T2DM), is rapidly increasing, posing significant health and economic challenges. T2DM not only disrupts blood glucose regulation but also damages vital organs such as the heart, kidneys, eyes, nerves, and blood vessels, leading to substantial morbidity and mortality. In the US alone, the economic burden of diagnosed diabetes exceeded \$400 billion in 2022. Early detection of individuals at risk is critical to mitigating these impacts. While machine learning approaches for T2DM prediction are increasingly adopted, many rely on supervised learning, which is often limited by the lack of confirmed negative cases. To address this limitation, we propose a novel unsupervised framework that integrates Non-negative Matrix Factorization (NMF) with statistical techniques to identify individuals at risk of developing T2DM. Our method identifies latent patterns of multimorbidity and polypharmacy among diagnosed T2DM patients and applies these patterns to estimate the T2DM risk in undiagnosed individuals. By leveraging data-driven insights from comorbidity and medication usage, our approach provides an interpretable and scalable solution that can assist healthcare providers in implementing timely interventions, ultimately improving patient outcomes and potentially reducing the future health and economic burden of T2DM.


IDA-Bench: Evaluating LLMs on Interactive Guided Data Analysis

arXiv.org Artificial Intelligence

Large Language Models (LLMs) show promise as data analysis agents, but existing benchmarks overlook the iterative nature of the field, where experts' decisions evolve with deeper insights of the dataset. To address this, we introduce IDA-Bench, a novel benchmark evaluating LLM agents in multi-round interactive scenarios. Derived from complex Kaggle notebooks, tasks are presented as sequential natural language instructions by an LLM-simulated user. Agent performance is judged by comparing its final numerical output to the human-derived baseline. Initial results show that even state-of-the-art coding agents (like Claude-3.7-thinking) succeed on < 50% of the tasks, highlighting limitations not evident in single-turn tests. This work underscores the need to improve LLMs' multi-round capabilities for building more reliable data analysis agents, highlighting the necessity of achieving a balance between instruction following and reasoning.