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 Deep Learning


AlphaApollo: Orchestrating Foundation Models and Professional Tools into a Self-Evolving System for Deep Agentic Reasoning

arXiv.org Artificial Intelligence

We present AlphaApollo, a self-evolving agentic reasoning system that aims to address two bottlenecks in foundation model (FM) reasoning-limited model-intrinsic capacity and unreliable test-time iteration. AlphaApollo orchestrates multiple models with professional tools to enable deliberate, verifiable reasoning. It couples (i) a computation tool (Python with numerical and symbolic libraries) and (ii) a retrieval tool (task-relevant external information) to execute exact calculations and ground decisions. The system further supports multi-round, multi-model solution evolution via a shared state map that records candidates, executable checks, and feedback for iterative refinement. In evaluations on AIME 2024/2025 across multiple models, AlphaApollo delivers consistent gains: +5.15% Average@32 and +23.34% Pass@32 for Qwen2.5-14B-Instruct, and +8.91% Average@32 with +26.67% Pass@32 for Llama-3.3-70B-Instruct. Tool-use analysis shows that more than 80% of tool calls are successfully executed, with consistent outperformance of non-tool baselines, thereby lifting the capability ceiling of FMs. More empirical results and implementation details will be updated at https://github.com/tmlr-group/AlphaApollo.


Ensemble Deep Learning and LLM-Assisted Reporting for Automated Skin Lesion Diagnosis

arXiv.org Artificial Intelligence

Cutaneous malignancies demand early detection for favorable outcomes, yet current diagnostics suffer from inter-observer variability and access disparities. While AI shows promise, existing dermatological systems are limited by homogeneous architectures, dataset biases across skin tones, and fragmented approaches that treat natural language processing as separate post-hoc explanations rather than integral to clinical decision-making. We introduce a unified framework that fundamentally reimagines AI integration for dermatological diagnostics through two synergistic innovations. First, a purposefully heterogeneous ensemble of architecturally diverse convolutional neural networks provides complementary diagnostic perspectives, with an intrinsic uncertainty mechanism flagging discordant cases for specialist review -- mimicking clinical best practices. Second, we embed large language model capabilities directly into the diagnostic workflow, transforming classification outputs into clinically meaningful assessments that simultaneously fulfill medical documentation requirements and deliver patient-centered education. This seamless integration generates structured reports featuring precise lesion characterization, accessible diagnostic reasoning, and actionable monitoring guidance -- empowering patients to recognize early warning signs between visits. By addressing both diagnostic reliability and communication barriers within a single cohesive system, our approach bridges the critical translational gap that has prevented previous AI implementations from achieving clinical impact. The framework represents a significant advancement toward deployable dermatological AI that enhances diagnostic precision while actively supporting the continuum of care from initial detection through patient education, ultimately improving early intervention rates for skin lesions.


Evaluating Embedding Frameworks for Scientific Domain

arXiv.org Artificial Intelligence

Finding an optimal word representation algorithm is particularly important in terms of domain specific data, as the same word can have different meanings and hence, different representations depending on the domain and context. While Generative AI and transformer architecture does a great job at generating contextualized embeddings for any given work, they are quite time and compute extensive, especially if we were to pre-train such a model from scratch. In this work, we focus on the scientific domain and finding the optimal word representation algorithm along with the tokenization method that could be used to represent words in the scientific domain. The goal of this research is two fold: 1) finding the optimal word representation and tokenization methods that can be used in downstream scientific domain NLP tasks, and 2) building a comprehensive evaluation suite that could be used to evaluate various word representation and tokenization algorithms (even as new ones are introduced) in the scientific domain. To this end, we build an evaluation suite consisting of several downstream tasks and relevant datasets for each task. Furthermore, we use the constructed evaluation suite to test various word representation and tokenization algorithms.


Knowledge Graph-Guided Multi-Agent Distillation for Reliable Industrial Question Answering with Datasets

arXiv.org Artificial Intelligence

Industrial question-answering (QA) systems require higher safety and reliability than general-purpose dialogue models, as errors in high-risk scenarios such as equipment fault diagnosis can have severe consequences. Although multi-agent large language models enhance reasoning depth, they suffer from uncontrolled iterations and unverifiable outputs, and conventional distillation methods struggle to transfer collaborative reasoning capabilities to lightweight, deployable student models. To address these challenges, we propose Knowledge Graph-guided Multi-Agent System Distillation (KG-MASD). Our approach formulates distillation as a Markov Decision Process and incorporates a knowledge graph as a verifiable structured prior to enrich state representation and ensure convergence. By integrating collaborative reasoning with knowledge grounding, KG-MASD generates high-confidence instruction-tuning data and jointly distills reasoning depth and verifiability into compact student models suitable for edge deployment. Experiments on an industrial QA dataset show that KG-MASD improves accuracy by 2.4 per cent to 20.1 per cent over baselines and significantly enhances reliability, enabling trustworthy AI deployment in safety-critical industrial scenarios. Code and data are available at https://github.com/erwinmsmith/KG-MAD/.


OpenStaxQA: A multilingual dataset based on open-source college textbooks

arXiv.org Artificial Intelligence

We present OpenStaxQA, an evaluation benchmark specific to college-level educational applications based on 43 open-source college textbooks in English, Spanish, and Polish, available under a permissive Creative Commons license. We finetune and evaluate large language models (LLMs) with approximately 7 billion parameters on this dataset using quantized low rank adapters (QLoRa). Additionally we also perform a zero-shot evaluation on the AI2 reasoning challenge dev dataset in order to check if OpenStaxQA can lead to an improved performance on other tasks. We also discuss broader impacts relevant to datasets such as OpenStaxQA.


Uncertainty Quantification In Surface Landmines and UXO Classification Using MC Dropout

arXiv.org Artificial Intelligence

Detecting surface landmines and unexploded ordnances (UXOs) using deep learning has shown promise in humanitarian demining. However, deterministic neural networks can be vulnerable to noisy conditions and adversarial attacks, leading to missed detection or misclassification. This study introduces the idea of uncertainty quantification through Monte Carlo (MC) Dropout, integrated into a fine-tuned ResNet-50 architecture for surface landmine and UXO classification, which was tested on a simulated dataset. Integrating the MC Dropout approach helps quantify epistemic uncertainty, providing an additional metric for prediction reliability, which could be helpful to make more informed decisions in demining operations. Experimental results on clean, adversarially perturbed, and noisy test images demonstrate the model's ability to flag unreliable predictions under challenging conditions. This proof-of-concept study highlights the need for uncertainty quantification in demining, raises awareness about the vulnerability of existing neural networks in demining to adversarial threats, and emphasizes the importance of developing more robust and reliable models for practical applications.


Stacked Regression using Off-the-shelf, Stimulus-tuned and Fine-tuned Neural Networks for Predicting fMRI Brain Responses to Movies (Algonauts 2025 Report)

arXiv.org Artificial Intelligence

Encoding models predict brain responses to a set of given stimuli. Recently, deep neural networks have been used as encoding models to predict brain activity as recorded by functional MRI (fMRI) [1, 2, 3, 4, 5, 6]. These studies investigate whether representations in deep neural networks correspond to those in the human brain. This relationship is often assessed using linear models, with successful prediction taken as evidence of shared representational structure. Studies have investigated representations from both unimodal and multimodal deep neural networks, including large language models (LLMs) [2, 4, 7, 8], vision models [9, 10], audio models [1, 11], and video-language models (VLMs) [12], to predict brain activity. However, existing studies face challenges in generalizability and comparability. Differences in stimulus modality, quantity, and content, as well as in preprocessing and scoring, make cross-study comparisons difficult. The Algonauts 2025 Challenge [13] provides a framework to address these issues, offering an openly available, preprocessed dataset with a large amount of data per subject and aligned stimuli across modalities, including video, audio, and transcripts, along with a standardized evaluation procedure. The challenge places particular emphasis on generalizability, including both in-distribution and out-of-distribution test sets to rigorously evaluate how well models transfer to new stimuli. 1


Neu-RadBERT for Enhanced Diagnosis of Brain Injuries and Conditions

arXiv.org Artificial Intelligence

Objective: We sought to develop a classification algorithm to extract diagnoses from free-text radiology reports of brain imaging performed in patients with acute respiratory failure (ARF) undergoing invasive mechanical ventilation. Methods: We developed and fine-tuned Neu-RadBERT, a BERT-based model, to classify unstructured radiology reports. We extracted all the brain imaging reports (computed tomography and magnetic resonance imaging) from MIMIC-IV database, performed in patients with ARF. Initial manual labelling was performed on a subset of reports for various brain abnormalities, followed by fine-tuning Neu-RadBERT using three strategies: 1) baseline RadBERT, 2) Neu-RadBERT with Masked Language Modeling (MLM) pretraining, and 3) Neu-RadBERT with MLM pretraining and oversampling to address data skewness. We compared the performance of this model to Llama-2-13B, an autoregressive LLM. Results: The Neu-RadBERT model, particularly with oversampling, demonstrated significant improvements in diagnostic accuracy compared to baseline RadBERT for brain abnormalities, achieving up to 98.0% accuracy for acute brain injuries. Llama-2-13B exhibited relatively lower performance, peaking at 67.5% binary classification accuracy. This result highlights potential limitations of current autoregressive LLMs for this specific classification task, though it remains possible that larger models or further fine-tuning could improve performance. Conclusion: Neu-RadBERT, enhanced through target domain pretraining and oversampling techniques, offered a robust tool for accurate and reliable diagnosis of neurological conditions from radiology reports. This study underscores the potential of transformer-based NLP models in automatically extracting diagnoses from free text reports with potential applications to both research and patient care.


CML-Bench: A Framework for Evaluating and Enhancing LLM-Powered Movie Scripts Generation

arXiv.org Artificial Intelligence

Large Language Models (LLMs) have demonstrated remarkable proficiency in generating highly structured texts. However, while exhibiting a high degree of structural organization, movie scripts demand an additional layer of nuanced storytelling and emotional depth-the 'soul' of compelling cinema-that LLMs often fail to capture. To investigate this deficiency, we first curated CML-Dataset, a dataset comprising (summary, content) pairs for Cinematic Markup Language (CML), where 'content' consists of segments from esteemed, high-quality movie scripts and 'summary' is a concise description of the content. Through an in-depth analysis of the intrinsic multi-shot continuity and narrative structures within these authentic scripts, we identified three pivotal dimensions for quality assessment: Dialogue Coherence (DC), Character Consistency (CC), and Plot Reasonableness (PR). Informed by these findings, we propose the CML-Bench, featuring quantitative metrics across these dimensions. CML-Bench effectively assigns high scores to well-crafted, human-written scripts while concurrently pinpointing the weaknesses in screenplays generated by LLMs. To further validate our benchmark, we introduce CML-Instruction, a prompting strategy with detailed instructions on character dialogue and event logic, to guide LLMs to generate more structured and cinematically sound scripts. Extensive experiments validate the effectiveness of our benchmark and demonstrate that LLMs guided by CML-Instruction generate higher-quality screenplays, with results aligned with human preferences.


Exploring Human-AI Collaboration Using Mental Models of Early Adopters of Multi-Agent Generative AI Tools

arXiv.org Artificial Intelligence

With recent advancements in multi-agent generative AI (Gen AI), technology organizations like Microsoft are adopting these complex tools, redefining AI agents as active collaborators in complex workflows rather than as passive tools. In this study, we investigated how early adopters and developers conceptualize multi-agent Gen AI tools, focusing on how they understand human-AI collaboration mechanisms, general collaboration dynamics, and transparency in the context of AI tools. We conducted semi-structured interviews with 13 developers, all early adopters of multi-agent Gen AI technology who work at Microsoft. Our findings revealed that these early adopters conceptualize multi-agent systems as "teams" of specialized role-based and task-based agents, such as assistants or reviewers, structured similar to human collaboration models and ranging from AI-dominant to AI-assisted, user-controlled interactions. We identified key challenges, including error propagation, unpredictable and unproductive agent loop behavior, and the need for clear communication to mitigate the layered transparency issues. Early adopters' perspectives about the role of transparency underscored its importance as a way to build trust, verify and trace errors, and prevent misuse, errors, and leaks. The insights and design considerations we present contribute to CSCW research about collaborative mechanisms with capabilities ranging from AI-dominant to AI-assisted interactions, transparency and oversight strategies in human-agent and agent-agent interactions, and how humans make sense of these multi-agent systems as dynamic, role-diverse collaborators which are customizable for diverse needs and workflows. We conclude with future research directions that extend CSCW approaches to the design of inter-agent and human mediation interactions.