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DeepChem Equivariant: SE(3)-Equivariant Support in an Open-Source Molecular Machine Learning Library

arXiv.org Artificial Intelligence

Neural networks that incorporate geometric relationships respecting SE(3) group transformations (e.g. rotations and translations) are increasingly important in molecular applications, such as molecular property prediction, protein structure modeling, and materials design. These models, known as SE(3)-equivariant neural networks, ensure outputs transform predictably with input coordinate changes by explicitly encoding spatial atomic positions. Although libraries such as E3NN [4] and SE(3)-TRANSFORMER [3 ] offer powerful implementations, they often require substantial deep learning or mathematical prior knowledge and lack complete training pipelines. We extend DEEPCHEM [ 13] with support for ready-to-use equivariant models, enabling scientists with minimal deep learning background to build, train, and evaluate models, such as SE(3)-Transformer and Tensor Field Networks. Our implementation includes equivariant models, complete training pipelines, and a toolkit of equivariant utilities, supported with comprehensive tests and documentation, to facilitate both application and further development of SE(3)-equivariant models.


Investigating Safety Vulnerabilities of Large Audio-Language Models Under Speaker Emotional Variations

arXiv.org Artificial Intelligence

ABSTRACT Large audio-language models (LALMs) extend text-based LLMs with auditory understanding, offering new opportunities for multimodal applications. While their perception, reasoning, and task performance have been widely studied, their safety alignment under paralinguistic variation remains underexplored. This work systematically investigates the role of speaker emotion. We construct a dataset of malicious speech instructions expressed across multiple emotions and intensities, and evaluate several state-of-the-art LALMs. Our results reveal substantial safety inconsistencies: different emotions elicit varying levels of unsafe responses, and the effect of intensity is non-monotonic, with medium expressions often posing the greatest risk. These findings highlight an overlooked vulnerability in LALMs and call for alignment strategies explicitly designed to ensure robustness under emotional variation, a prerequisite for trustworthy deployment in real-world settings.


DeepAnalyze: Agentic Large Language Models for Autonomous Data Science

arXiv.org Artificial Intelligence

Autonomous data science, from raw data sources to analyst-grade deep research reports, has been a long-standing challenge, and is now becoming feasible with the emergence of powerful large language models (LLMs). Recent workflow-based data agents have shown promising results on specific data tasks but remain fundamentally limited in achieving fully autonomous data science due to their reliance on predefined workflows. In this paper, we introduce DeepAnalyze-8B, the first agentic LLM designed for autonomous data science, capable of automatically completing the end-toend pipeline from data sources to analyst-grade deep research reports. To tackle high-complexity data science tasks, we propose a curriculum-based agentic training paradigm that emulates the learning trajectory of human data scientists, enabling LLMs to progressively acquire and integrate multiple capabilities in real-world environments. We also introduce a data-grounded trajectory synthesis framework that constructs high-quality training data. Through agentic training, DeepAnalyze learns to perform a broad spectrum of data tasks, ranging from data question answering and specialized analytical tasks to open-ended data research. Experiments demonstrate that, with only 8B parameters, DeepAnalyze outperforms previous workflow-based agents built on most advanced proprietary LLMs. The model, code, and training data of DeepAnalyze are open-sourced, paving the way toward autonomous data science.


ArmFormer: Lightweight Transformer Architecture for Real-Time Multi-Class Weapon Segmentation and Classification

arXiv.org Artificial Intelligence

The escalating threat of weapon-related violence necessitates automated detection systems capable of pixel-level precision for accurate threat assessment in real-time security applications. Traditional weapon detection approaches rely on object detection frameworks that provide only coarse bounding box localizations, lacking the fine-grained segmentation required for comprehensive threat analysis. Furthermore, existing semantic segmentation models either sacrifice accuracy for computational efficiency or require excessive computational resources incompatible with edge deployment scenarios. This paper presents ArmFormer, a lightweight transformer-based semantic segmentation framework that strategically integrates Convolutional Block Attention Module (CBAM) with MixVisionTransformer architecture to achieve superior accuracy while maintaining computational efficiency suitable for resource-constrained edge devices. Our approach combines CBAM-enhanced encoder backbone with attention-integrated hamburger decoder to enable multi-class weapon segmentation across five categories: handgun, rifle, knife, revolver, and human. Comprehensive experiments demonstrate that ArmFormer achieves state-of-the-art performance with 80.64% mIoU and 89.13% mFscore while maintaining real-time inference at 82.26 FPS. With only 4.886G FLOPs and 3.66M parameters, ArmFormer outperforms heavyweight models requiring up to 48x more computation, establishing it as the optimal solution for deployment on portable security cameras, surveillance drones, and embedded AI accelerators in distributed security infrastructure.


Neuronal Group Communication for Efficient Neural representation

arXiv.org Artificial Intelligence

The ever-increasing scale of modern neural networks has brought unprecedented performance alongside daunting challenges in efficiency and interpretability. This paper addresses the core question of how to build large neural systems that learn efficient, modular, and interpretable representations. We propose Neuronal Group Communication (NGC), a theory-driven framework that reimagines a neural network as a dynamical system of interacting neuronal groups rather than a monolithic collection of neural weights. Instead of treating each weight as an independent trainable parameter, NGC treats weights as transient interactions between embedding-like neuronal states, with neural computation unfolding through iterative communication among groups of neurons. This low-rank, modular representation yields compact models: groups of neurons exchange low-dimensional signals, enabling intra-group specialization and inter-group information sharing while dramatically reducing redundant parameters. By drawing on dynamical systems theory, we introduce a neuronal stability metric (analogous to Lyapunov stability) that quantifies the contraction of neuron activations toward stable patterns during sequence processing. Using this metric, we reveal that emergent reasoning capabilities correspond to an external driving force or ``potential'', which nudges the neural dynamics away from trivial trajectories while preserving stability. Empirically, we instantiate NGC in large language models (LLMs) and demonstrate improved performance on complex reasoning benchmarks under moderate compression. NGC consistently outperforms standard low-rank approximations and cross-layer basis-sharing methods at comparable compression rates. We conclude by discussing the broader implications of NGC, including how structured neuronal group dynamics might relate to generalization in high-dimensional learning systems.


FinSight: Towards Real-World Financial Deep Research

arXiv.org Artificial Intelligence

Generating professional financial reports is a labor-intensive and intellectually demanding process that current AI systems struggle to fully automate. To address this challenge, we introduce FinSight (Financial InSight), a novel multi agent framework for producing high-quality, multimodal financial reports. The foundation of FinSight is the Code Agent with Variable Memory (CAVM) architecture, which unifies external data, designed tools, and agents into a programmable variable space, enabling flexible data collection, analysis and report generation through executable code. To ensure professional-grade visualization, we propose an Iterative Vision-Enhanced Mechanism that progressively refines raw visual outputs into polished financial charts. Furthermore, a two stage Writing Framework expands concise Chain-of-Analysis segments into coherent, citation-aware, and multimodal reports, ensuring both analytical depth and structural consistency. Experiments on various company and industry-level tasks demonstrate that FinSight significantly outperforms all baselines, including leading deep research systems in terms of factual accuracy, analytical depth, and presentation quality, demonstrating a clear path toward generating reports that approach human-expert quality.


Schrรถdinger Bridge Mamba for One-Step Speech Enhancement

arXiv.org Artificial Intelligence

ABSTRACT We propose Schr odinger Bridge Mamba (SBM), a new concept of training-inference framework motivated by the inherent compatibility between Schr odinger Bridge (SB) training paradigm and selective state-space model Mamba. Experiments on a joint denoising and dereverberation task using four benchmark datasets demonstrate that SBM, with only 1-step inference, outperforms strong baselines with 1-step or iterative inference and achieves the best real-time factor (RTF). Beyond speech enhancement, we discuss the integration of SB paradigm and selective state-space model architecture based on their underlying alignment, which indicates a promising direction for exploring new deep generative models potentially applicable to a broad range of generative tasks. Index T erms-- Schr odinger Bridge, Mamba, Deep generative model, Speech enhancement 1. INTRODUCTION Deep generative models have been increasingly employed for speech enhancement (SE) tasks. By learning the underlying distribution of clean audio given its degraded counterpart, generative models are capable of generating high-quality speech from low-quality inputs that include noise, reverberation, clipping, bandwidth limitation or a mixture of these artifacts.


Who's Asking? Simulating Role-Based Questions for Conversational AI Evaluation

arXiv.org Artificial Intelligence

Language model users often embed personal and social context in their questions. The asker's role -- implicit in how the question is framed -- creates specific needs for an appropriate response. However, most evaluations, while capturing the model's capability to respond, often ignore who is asking. This gap is especially critical in stigmatized domains such as opioid use disorder (OUD), where accounting for users' contexts is essential to provide accessible, stigma-free responses. We propose CoRUS (COmmunity-driven Roles for User-centric Question Simulation), a framework for simulating role-based questions. Drawing on role theory and posts from an online OUD recovery community (r/OpiatesRecovery), we first build a taxonomy of asker roles -- patients, caregivers, practitioners. Next, we use it to simulate 15,321 questions that embed each role's goals, behaviors, and experiences. Our evaluations show that these questions are both highly believable and comparable to real-world data. When used to evaluate five LLMs, for the same question but differing roles, we find systematic differences: vulnerable roles, such as patients and caregivers, elicit more supportive responses (+17%) and reduced knowledge content (-19%) in comparison to practitioners. Our work demonstrates how implicitly signaling a user's role shapes model responses, and provides a methodology for role-informed evaluation of conversational AI.


ProtoMol: Enhancing Molecular Property Prediction via Prototype-Guided Multimodal Learning

arXiv.org Artificial Intelligence

Multimodal molecular representation learning, which jointly models molecular graphs and their textual descriptions, enhances predictive accuracy and interpretability by enabling more robust and reliable predictions of drug toxicity, bioactivity, and physicochemical properties through the integration of structural and semantic information. However, existing multimodal methods suffer from two key limitations: (1) they typically perform cross-modal interaction only at the final encoder layer, thus overlooking hierarchical semantic dependencies; (2) they lack a unified prototype space for robust alignment between modalities. To address these limitations, we propose ProtoMol, a prototype-guided multimodal framework that enables fine-grained integration and consistent semantic alignment between molecular graphs and textual descriptions. ProtoMol incorporates dual-branch hierarchical encoders, utilizing Graph Neural Networks to process structured molecular graphs and Transformers to encode unstructured texts, resulting in comprehensive layer-wise representations. Then, ProtoMol introduces a layer-wise bidirectional cross-modal attention mechanism that progressively aligns semantic features across layers. Furthermore, a shared prototype space with learnable, class-specific anchors is constructed to guide both modalities toward coherent and discriminative representations. Extensive experiments on multiple benchmark datasets demonstrate that ProtoMol consistently outperforms state-of-the-art baselines across a variety of molecular property prediction tasks.


Needles in the Landscape: Semi-Supervised Pseudolabeling for Archaeological Site Discovery under Label Scarcity

arXiv.org Artificial Intelligence

Archaeological predictive modelling estimates where undiscovered sites are likely to occur by combining known locations with environmental, cultural, and geospatial variables. We address this challenge using a deep learning approach but must contend with structural label scarcity inherent to archaeology: positives are rare, and most locations are unlabeled. To address this, we adopt a semi-supervised, positive-unlabeled (PU) learning strategy, implemented as a semantic segmentation model and evaluated on two datasets covering a representative range of archaeological periods. Our approach employs dynamic pseudolabeling, refined with a Conditional Random Field (CRF) implemented via an RNN, increasing label confidence under severe class imbalance. On a geospatial dataset derived from a digital elevation model (DEM), our model performs on par with the state-of-the-art, LAMAP, while achieving higher Dice scores. On raw satellite imagery, assessed end-to-end with stratified k-fold cross-validation, it maintains performance and yields predictive surfaces with improved interpretability. Overall, our results indicate that semi-supervised learning offers a promising approach to identifying undiscovered sites across large, sparsely annotated landscapes.