Deep Learning
ConfRover: Simultaneous Modeling of Protein Conformation and Dynamics via Autoregression
Shen, Yuning, Wang, Lihao, Yuan, Huizhuo, Wang, Yan, Yang, Bangji, Gu, Quanquan
Understanding protein dynamics is critical for elucidating their biological functions. The increasing availability of molecular dynamics (MD) data enables the training of deep generative models to efficiently explore the conformational space of proteins. However, existing approaches either fail to explicitly capture the temporal dependencies between conformations or do not support direct generation of time-independent samples. To address these limitations, we introduce ConfRover, an autoregressive model that simultaneously learns protein conformation and dynamics from MD trajectories, supporting both time-dependent and time-independent sampling. At the core of our model is a modular architecture comprising: (i) an encoding layer, adapted from protein folding models, that embeds protein-specific information and conformation at each time frame into a latent space; (ii) a temporal module, a sequence model that captures conformational dynamics across frames; and (iii) an SE(3) diffusion model as the structure decoder, generating conformations in continuous space. Experiments on ATLAS, a large-scale protein MD dataset of diverse structures, demonstrate the effectiveness of our model in learning conformational dynamics and supporting a wide range of downstream tasks. ConfRover is the first model to sample both protein conformations and trajectories within a single framework, offering a novel and flexible approach for learning from protein MD data. Project website: https://bytedance-seed.github.io/ConfRover.
Can VLMs Detect and Localize Fine-Grained AI-Edited Images?
Sun, Zhen, Zhang, Ziyi, Luo, Zeren, Zhong, Zhiyuan, Sha, Zeyang, Cong, Tianshuo, Li, Zheng, Cui, Shiwen, Wang, Weiqiang, Wei, Jiaheng, He, Xinlei, Li, Qi, Wang, Qian
Fine-grained detection and localization of localized image edits is crucial for assessing content authenticity, especially as modern diffusion models and image editors can produce highly realistic manipulations. However, this problem faces three key challenges: (1) most AIGC detectors produce only a global real-or-fake label without indicating where edits occur; (2) traditional computer vision methods for edit localization typically rely on costly pixel-level annotations; and (3) there is no large-scale, modern benchmark specifically targeting edited-image detection. To address these gaps, we develop an automated data-generation pipeline and construct FragFake, a large-scale benchmark of AI-edited images spanning multiple source datasets, diverse editing models, and several common edit types. Building on FragFake, we are the first to systematically study vision language models (VLMs) for edited-image classification and edited-region localization. Our experiments show that pretrained VLMs, including GPT4o, perform poorly on this task, whereas fine-tuned models such as Qwen2.5-VL achieve high accuracy and substantially higher object precision across all settings. We further explore GRPO-based RLVR training, which yields modest metric gains while improving the interpretability of model outputs. Ablation and transfer analyses reveal how data balancing, training size, LoRA rank, and training domain affect performance, and highlight both the potential and the limitations of cross-editor and cross-dataset generalization. We anticipate that this work will establish a solid foundation to facilitate and inspire subsequent research endeavors in the domain of multimodal content authenticity.
sudoLLM: On Multi-role Alignment of Language Models
Saha, Soumadeep, Chaturvedi, Akshay, Mahapatra, Joy, Garain, Utpal
User authorization-based access privileges are a key feature in many safety-critical systems, but have not been extensively studied in the large language model (LLM) realm. In this work, drawing inspiration from such access control systems, we introduce sudoLLM, a novel framework that results in multi-role aligned LLMs, i.e., LLMs that account for, and behave in accordance with, user access rights. sudoLLM injects subtle user-based biases into queries and trains an LLM to utilize this bias signal in order to produce sensitive information if and only if the user is authorized. We present empirical results demonstrating that this approach shows substantially improved alignment, generalization, resistance to prefix-based jailbreaking attacks, and ``fails-closed''. The persistent tension between the language modeling objective and safety alignment, which is often exploited to jailbreak LLMs, is somewhat resolved with the aid of the injected bias signal. Our framework is meant as an additional security layer, and complements existing guardrail mechanisms for enhanced end-to-end safety with LLMs.
Challenges and Limitations of Generative AI in Synthesizing Wearable Sensor Data
Di Martino, Flavio, Delmastro, Franca
The widespread adoption of wearable sensors has the potential to provide massive and heterogeneous time series data, driving the use of Artificial Intelligence in human sensing applications. However, data collection remains limited due to stringent ethical regulations, privacy concerns, and other constraints, hindering progress in the field. Synthetic data generation, particularly through Generative Adversarial Networks and Diffusion Models, has emerged as a promising solution to mitigate both data scarcity and privacy issues. However, these models are often limited to narrow operational scenarios, such as short-term and unimodal signal patterns. To address this gap, we present a systematic evaluation of state-of-the-art generative models for time series data, explicitly assessing their performance in challenging scenarios such as stress and emotion recognition. Our study examines the extent to which these models can jointly handle multi-modality, capture long-range dependencies, and support conditional generation-core requirements for real-world wearable sensor data generation. To enable a fair and rigorous comparison, we also introduce an evaluation framework that evaluates both the intrinsic fidelity of the generated data and their utility in downstream predictive tasks. Our findings reveal critical limitations in the existing approaches, particularly in maintaining cross-modal consistency, preserving temporal coherence, and ensuring robust performance in train-on-synthetic, test-on-real, and data augmentation scenarios. Finally, we present our future research directions to enhance synthetic time series generation and improve the applicability of generative models in the wearable computing domain.
Finetune-RAG: Fine-Tuning Language Models to Resist Hallucination in Retrieval-Augmented Generation
Lee, Zhan Peng, Lin, Andre, Tan, Calvin
Retrieval-Augmented Generation (RAG) has emerged as a powerful framework to improve factuality in large language models (LLMs) by grounding their outputs in retrieved documents. However, ensuring perfect retrieval of relevant information remains challenging, and when irrelevant content is passed downstream to an LLM, it can lead to hallucinations. In this work, we propose Finetune-RAG, a simple and effective fine-tuning approach that features the first-of-its-kind RAG training dataset constructed to mimic real-world imperfections. Experimental results show that Finetune-RAG improves factual accuracy by 21.2% over the base model. We also propose Bench-RAG, an LLM-as-a-judge evaluation pipeline that stress tests models under realistic imperfect retrieval scenarios. Our codebase and dataset are fully open sourced for community use.
Privacy Risks and Preservation Methods in Explainable Artificial Intelligence: A Scoping Review
Allana, Sonal, Kankanhalli, Mohan, Dara, Rozita
Explainable Artificial Intelligence (XAI) has emerged as a pillar of Trustworthy AI and aims to bring transparency in complex models that are opaque by nature. Despite the benefits of incorporating explanations in models, an urgent need is found in addressing the privacy concerns of providing this additional information to end users. In this article, we conduct a scoping review of existing literature to elicit details on the conflict between privacy and explainability. Using the standard methodology for scoping review, we extracted 57 articles from 1,943 studies published from January 2019 to December 2024. The review addresses 3 research questions to present readers with more understanding of the topic: (1) what are the privacy risks of releasing explanations in AI systems? (2) what current methods have researchers employed to achieve privacy preservation in XAI systems? (3) what constitutes a privacy preserving explanation? Based on the knowledge synthesized from the selected studies, we categorize the privacy risks and preservation methods in XAI and propose the characteristics of privacy preserving explanations to aid researchers and practitioners in understanding the requirements of XAI that is privacy compliant. Lastly, we identify the challenges in balancing privacy with other system desiderata and provide recommendations for achieving privacy preserving XAI. We expect that this review will shed light on the complex relationship of privacy and explainability, both being the fundamental principles of Trustworthy AI.
xEEGNet: Towards Explainable AI in EEG Dementia Classification
Zanola, Andrea, Tshimanga, Louis Fabrice, Del Pup, Federico, Baiesi, Marco, Atzori, Manfredo
This work presents xEEGNet, a novel, compact, and explainable neural network for EEG data analysis. It is fully interpretable and reduces overfitting through major parameter reduction. As an applicative use case, we focused on classifying common dementia conditions, Alzheimer's and frontotemporal dementia, versus controls. xEEGNet is broadly applicable to other neurological conditions involving spectral alterations. We initially used ShallowNet, a simple and popular model from the EEGNet-family. Its structure was analyzed and gradually modified to move from a "black box" to a more transparent model, without compromising performance. The learned kernels and weights were examined from a clinical standpoint to assess medical relevance. Model variants, including ShallowNet and the final xEEGNet, were evaluated using robust Nested-Leave-N-Subjects-Out cross-validation for unbiased performance estimates. Variability across data splits was explained using embedded EEG representations, grouped by class and set, with pairwise separability to quantify group distinction. Overfitting was assessed through training-validation loss correlation and training speed. xEEGNet uses only 168 parameters, 200 times fewer than ShallowNet, yet retains interpretability, resists overfitting, achieves comparable median performance (-1.5%), and reduces variability across splits. This variability is explained by embedded EEG representations: higher accuracy correlates with greater separation between test set controls and Alzheimer's cases, without significant influence from training data. xEEGNet's ability to filter specific EEG bands, learn band-specific topographies, and use relevant spectral features demonstrates its interpretability. While large deep learning models are often prioritized for performance, this study shows smaller architectures like xEEGNet can be equally effective in EEG pathology classification.
Bigram Subnetworks: Mapping to Next Tokens in Transformer Language Models
Chang, Tyler A., Bergen, Benjamin K.
In Transformer language models, activation vectors transform from current token embeddings to next token predictions as they pass through the model. To isolate a minimal form of this transformation, we identify language model subnetworks that make bigram predictions, naive next token predictions based only on the current token. We find that bigram subnetworks can be found in fully trained language models up to 1B parameters, and these subnetworks are critical for model performance even when they consist of less than 0.2% of model parameters. Bigram subnetworks are concentrated in the first Transformer MLP layer, and they overlap significantly with subnetworks trained to optimally prune a given model. Mechanistically, the bigram subnetworks often recreate a pattern from the full models where the first layer induces a sharp change that aligns activations with next token predictions rather than current token representations. Our results demonstrate that bigram subnetworks comprise a minimal subset of parameters that are both necessary and sufficient for basic next token predictions in language models, and they help drive the transformation from current to next token activations in the residual stream. These subnetworks can lay a foundation for studying more complex language model circuits by building up from a minimal circuit.
Energy-Conserving Neural Network Closure Model for Long-Time Accurate and Stable LES
van Gastelen, Toby, Edeling, Wouter, Sanderse, Benjamin
Machine learning-based closure models for LES have shown promise in capturing complex turbulence dynamics but often suffer from instabilities and physical inconsistencies. In this work, we develop a novel skew-symmetric neural architecture as closure model that enforces stability while preserving key physical conservation laws. Our approach leverages a discretization that ensures mass, momentum, and energy conservation, along with a face-averaging filter to maintain mass conservation in coarse-grained velocity fields. We compare our model against several conventional data-driven closures (including unconstrained convolutional neural networks), and the physics-based Smagorinsky model. Performance is evaluated on decaying turbulence and Kolmogorov flow for multiple coarse-graining factors. In these test cases we observe that unconstrained machine learning models suffer from numerical instabilities. In contrast, our skew-symmetric model remains stable across all tests, though at the cost of increased dissipation. Despite this trade-off, we demonstrate that our model still outperforms the Smagorinsky model in unseen scenarios. These findings highlight the potential of structure-preserving machine learning closures for reliable long-time LES.
OpenAI's new confession system teaches models to be honest about bad behaviors
OpenAI's new confession system teaches models to be honest about bad behaviors I guess AI gotta give part two of my confessions. OpenAI announced today that it is working on a framework that will train artificial intelligence models to acknowledge when they've engaged in undesirable behavior, an approach the team calls a confession. Since large language models are often trained to produce the response that seems to be desired, they can become increasingly likely to provide sycophancy or state hallucinations with total confidence. The new training model tries to encourage a secondary response from the model about what it did to arrive at the main answer it provides. Confessions are only judged on honesty, as opposed to the multiple factors that are used to judge main replies, such as helpfulness, accuracy and compliance.