Generative AI
Deep Lead Optimization: Leveraging Generative AI for Structural Modification
Zhang, Odin, Lin, Haitao, Zhang, Hui, Zhao, Huifeng, Huang, Yufei, Huang, Yuansheng, Jiang, Dejun, Hsieh, Chang-yu, Pan, Peichen, Hou, Tingjun
The idea of using deep-learning-based molecular generation to accelerate discovery of drug candidates has attracted extraordinary attention, and many deep generative models have been developed for automated drug design, termed molecular generation. In general, molecular generation encompasses two main strategies: de novo design, which generates novel molecular structures from scratch, and lead optimization, which refines existing molecules into drug candidates. Among them, lead optimization plays an important role in real-world drug design. For example, it can enable the development of me-better drugs that are chemically distinct yet more effective than the original drugs. It can also facilitate fragment-based drug design, transforming virtual-screened small ligands with low affinity into first-in-class medicines. Despite its importance, automated lead optimization remains underexplored compared to the well-established de novo generative models, due to its reliance on complex biological and chemical knowledge. To bridge this gap, we conduct a systematic review of traditional computational methods for lead optimization, organizing these strategies into four principal sub-tasks with defined inputs and outputs. This review delves into the basic concepts, goals, conventional CADD techniques, and recent advancements in AIDD. Additionally, we introduce a unified perspective based on constrained subgraph generation to harmonize the methodologies of de novo design and lead optimization. Through this lens, de novo design can incorporate strategies from lead optimization to address the challenge of generating hard-to-synthesize molecules; inversely, lead optimization can benefit from the innovations in de novo design by approaching it as a task of generating molecules conditioned on certain substructures.
Can ChatGPT Make Explanatory Inferences? Benchmarks for Abductive Reasoning
Explanatory inference is the creation and evaluation of hypotheses that provide explanations, and is sometimes known as abduction or abductive inference. Generative AI is a new set of artificial intelligence models based on novel algorithms for generating text, images, and sounds. This paper proposes a set of benchmarks for assessing the ability of AI programs to perform explanatory inference, and uses them to determine the extent to which ChatGPT, a leading generative AI model, is capable of making explanatory inferences. Tests on the benchmarks reveal that ChatGPT performs creative and evaluative inferences in many domains, although it is limited to verbal and visual modalities. Claims that ChatGPT and similar models are incapable of explanation, understanding, causal reasoning, meaning, and creativity are rebutted.
From ChatGPT, DALL-E 3 to Sora: How has Generative AI Changed Digital Humanities Research and Services?
Liu, Jiangfeng, Wang, Ziyi, Xie, Jing, Pei, Lei
Generative large-scale language models create the fifth paradigm of scientific research, organically combine data science and computational intelligence, transform the research paradigm of natural language processing and multimodal information processing, promote the new trend of AI-enabled social science research, and provide new ideas for digital humanities research and application. This article profoundly explores the application of large-scale language models in digital humanities research, revealing their significant potential in ancient book protection, intelligent processing, and academic innovation. The article first outlines the importance of ancient book resources and the necessity of digital preservation, followed by a detailed introduction to developing large-scale language models, such as ChatGPT, and their applications in document management, content understanding, and cross-cultural research. Through specific cases, the article demonstrates how AI can assist in the organization, classification, and content generation of ancient books. Then, it explores the prospects of AI applications in artistic innovation and cultural heritage preservation. Finally, the article explores the challenges and opportunities in the interaction of technology, information, and society in the digital humanities triggered by AI technologies.
Equivalence: An analysis of artists' roles with Image Generative AI from Conceptual Art perspective through an interactive installation design practice
Li, Yixuan, Baciu, Dan C., Novak, Marcos, Legrady, George
Over the past year, the emergence of advanced text-to-image Generative AI models has significantly impacted the art world, challenging traditional notions of creativity and the role of artists. This study explores how artists interact with these technologies, using a 5P model (Purpose, People, Process, Product, and Press) based on Rhodes' creativity framework to compare the artistic processes behind Conceptual Art and Image Generative AI. To exemplify this framework, a practical case study titled "Equivalence", a multi-screen interactive installation that converts users' speech input into continuously evolving paintings developed based on Stable Diffusion and NLP algorithms, was developed. Through comprehensive analysis and the case study, this work aims to broaden our understanding of artists' roles and foster a deeper appreciation for the creative aspects inherent in artwork created with Image Generative AI.
Generative AI for Low-Carbon Artificial Intelligence of Things
Wen, Jinbo, Zhang, Ruichen, Niyato, Dusit, Kang, Jiawen, Du, Hongyang, Zhang, Yang, Han, Zhu
By integrating Artificial Intelligence (AI) with the Internet of Things (IoT), Artificial Intelligence of Things (AIoT) has revolutionized many fields. However, AIoT is facing the challenges of energy consumption and carbon emissions due to the continuous advancement of mobile technology. Fortunately, Generative AI (GAI) holds immense potential to reduce carbon emissions of AIoT due to its excellent reasoning and generation capabilities. In this article, we explore the potential of GAI for carbon emissions reduction and propose a novel GAI-enabled solution for low-carbon AIoT. Specifically, we first study the main impacts that cause carbon emissions in AIoT, and then introduce GAI techniques and their relations to carbon emissions. We then explore the application prospects of GAI in low-carbon AIoT, focusing on how GAI can reduce carbon emissions of network components. Subsequently, we propose a Large Language Model (LLM)-enabled carbon emission optimization framework, in which we design pluggable LLM and Retrieval Augmented Generation (RAG) modules to generate more accurate and reliable optimization problems. Furthermore, we utilize Generative Diffusion Models (GDMs) to identify optimal strategies for carbon emission reduction. Simulation results demonstrate the effectiveness of the proposed framework. Finally, we insightfully provide open research directions for low-carbon AIoT.
SAFE-RL: Saliency-Aware Counterfactual Explainer for Deep Reinforcement Learning Policies
Samadi, Amir, Koufos, Konstantinos, Debattista, Kurt, Dianati, Mehrdad
While Deep Reinforcement Learning (DRL) has emerged as a promising solution for intricate control tasks, the lack of explainability of the learned policies impedes its uptake in safety-critical applications, such as automated driving systems (ADS). Counterfactual (CF) explanations have recently gained prominence for their ability to interpret black-box Deep Learning (DL) models. CF examples are associated with minimal changes in the input, resulting in a complementary output by the DL model. Finding such alternations, particularly for high-dimensional visual inputs, poses significant challenges. Besides, the temporal dependency introduced by the reliance of the DRL agent action on a history of past state observations further complicates the generation of CF examples. To address these challenges, we propose using a saliency map to identify the most influential input pixels across the sequence of past observed states by the agent. Then, we feed this map to a deep generative model, enabling the generation of plausible CFs with constrained modifications centred on the salient regions. We evaluate the effectiveness of our framework in diverse domains, including ADS, Atari Pong, Pacman and space-invaders games, using traditional performance metrics such as validity, proximity and sparsity. Experimental results demonstrate that this framework generates more informative and plausible CFs than the state-of-the-art for a wide range of environments and DRL agents. In order to foster research in this area, we have made our datasets and codes publicly available at https://github.com/Amir-Samadi/SAFE-RL.
Generating Situated Reflection Triggers about Alternative Solution Paths: A Case Study of Generative AI for Computer-Supported Collaborative Learning
Naik, Atharva, Yin, Jessica Ruhan, Kamath, Anusha, Ma, Qianou, Wu, Sherry Tongshuang, Murray, Charles, Bogart, Christopher, Sakr, Majd, Rose, Carolyn P.
An advantage of Large Language Models (LLMs) is their contextualization capability - providing different responses based on student inputs like solution strategy or prior discussion, to potentially better engage students than standard feedback. We present a design and evaluation of a proof-of-concept LLM application to offer students dynamic and contextualized feedback. Specifically, we augment an Online Programming Exercise bot for a college-level Cloud Computing course with ChatGPT, which offers students contextualized reflection triggers during a collaborative query optimization task in database design. We demonstrate that LLMs can be used to generate highly situated reflection triggers that incorporate details of the collaborative discussion happening in context. We discuss in depth the exploration of the design space of the triggers and their correspondence with the learning objectives as well as the impact on student learning in a pilot study with 34 students.
Do Neutral Prompts Produce Insecure Code? FormAI-v2 Dataset: Labelling Vulnerabilities in Code Generated by Large Language Models
Tihanyi, Norbert, Bisztray, Tamas, Ferrag, Mohamed Amine, Jain, Ridhi, Cordeiro, Lucas C.
This study provides a comparative analysis of state-of-the-art large language models (LLMs), analyzing how likely they generate vulnerabilities when writing simple C programs using a neutral zero-shot prompt. We address a significant gap in the literature concerning the security properties of code produced by these models without specific directives. N. Tihanyi et al. introduced the FormAI dataset at PROMISE '23, containing 112,000 GPT-3.5-generated C programs, with over 51.24% identified as vulnerable. We expand that work by introducing the FormAI-v2 dataset comprising 265,000 compilable C programs generated using various LLMs, including robust models such as Google's GEMINI-pro, OpenAI's GPT-4, and TII's 180 billion-parameter Falcon, to Meta's specialized 13 billion-parameter CodeLLama2 and various other compact models. Each program in the dataset is labelled based on the vulnerabilities detected in its source code through formal verification using the Efficient SMT-based Context-Bounded Model Checker (ESBMC). This technique eliminates false positives by delivering a counterexample and ensures the exclusion of false negatives by completing the verification process. Our study reveals that at least 63.47% of the generated programs are vulnerable. The differences between the models are minor, as they all display similar coding errors with slight variations. Our research highlights that while LLMs offer promising capabilities for code generation, deploying their output in a production environment requires risk assessment and validation.
Generative AI for Visualization: State of the Art and Future Directions
Ye, Yilin, Hao, Jianing, Hou, Yihan, Wang, Zhan, Xiao, Shishi, Luo, Yuyu, Zeng, Wei
Generative AI (GenAI) has witnessed remarkable progress in recent years and demonstrated impressive performance in various generation tasks in different domains such as computer vision and computational design. Many researchers have attempted to integrate GenAI into visualization framework, leveraging the superior generative capacity for different operations. Concurrently, recent major breakthroughs in GenAI like diffusion model and large language model have also drastically increase the potential of GenAI4VIS. From a technical perspective, this paper looks back on previous visualization studies leveraging GenAI and discusses the challenges and opportunities for future research. Specifically, we cover the applications of different types of GenAI methods including sequence, tabular, spatial and graph generation techniques for different tasks of visualization which we summarize into four major stages: data enhancement, visual mapping generation, stylization and interaction. For each specific visualization sub-task, we illustrate the typical data and concrete GenAI algorithms, aiming to provide in-depth understanding of the state-of-the-art GenAI4VIS techniques and their limitations. Furthermore, based on the survey, we discuss three major aspects of challenges and research opportunities including evaluation, dataset, and the gap between end-to-end GenAI and generative algorithms. By summarizing different generation algorithms, their current applications and limitations, this paper endeavors to provide useful insights for future GenAI4VIS research.
Deep generative modelling of canonical ensemble with differentiable thermal properties
Li, Shuo-Hui, Zhang, Yao-Wen, Pan, Ding
We propose a variational modelling method with differentiable temperature for canonical ensembles. Using a deep generative model, the free energy is estimated and minimized simultaneously in a continuous temperature range. At optimal, this generative model is a Boltzmann distribution with temperature dependence. The training process requires no dataset, and works with arbitrary explicit density generative models. We applied our method to study the phase transitions (PT) in the Ising and XY models, and showed that the direct-sampling simulation of our model is as accurate as the Markov Chain Monte Carlo (MCMC) simulation, but more efficient. Moreover, our method can give thermodynamic quantities as differentiable functions of temperature akin to an analytical solution. The free energy aligns closely with the exact one to the second-order derivative, so this inclusion of temperature dependence enables the otherwise biased variational model to capture the subtle thermal effects at the PTs. These findings shed light on the direct simulation of physical systems using deep generative models