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 Learning Graphical Models


Summary Statistics for Partitionings and Feature Allocations

arXiv.org Machine Learning

Infinite mixture models are commonly used for clustering. One can sample from the posterior of mixture assignments by Monte Carlo methods or find its maximum a posteriori solution by optimization. However, in some problems the posterior is diffuse and it is hard to interpret the sampled partitionings. In this paper, we introduce novel statistics based on block sizes for representing sample sets of partitionings and feature allocations. We develop an element-based definition of entropy to quantify segmentation among their elements. Then we propose a simple algorithm called entropy agglomeration (EA) to summarize and visualize this information. Experiments on various infinite mixture posteriors as well as a feature allocation dataset demonstrate that the proposed statistics are useful in practice.


Unsupervised Sub-tree Alignment for Tree-to-Tree Translation

Journal of Artificial Intelligence Research

This article presents a probabilistic sub-tree alignment model and its application to tree-to-tree machine translation. Unlike previous work, we do not resort to surface heuristics or expensive annotated data, but instead derive an unsupervised model to infer the syntactic correspondence between two languages. More importantly, the developed model is syntactically-motivated and does not rely on word alignments. As a by-product, our model outputs a sub-tree alignment matrix encoding a large number of diverse alignments between syntactic structures, from which machine translation systems can efficiently extract translation rules that are often filtered out due to the errors in 1-best alignment. Experimental results show that the proposed approach outperforms three state-of-the-art baseline approaches in both alignment accuracy and grammar quality. When applied to machine translation, our approach yields a +1.0 BLEU improvement and a -0.9 TER reduction on the NIST machine translation evaluation corpora. With tree binarization and fuzzy decoding, it even outperforms a state-of-the-art hierarchical phrase-based system.


Learning Pairwise Graphical Models with Nonlinear Sufficient Statistics

arXiv.org Machine Learning

We investigate a generic problem of learning pairwise exponential family graphical models with pairwise sufficient statistics defined by a global mapping function, e.g., Mercer kernels. This subclass of pairwise graphical models allow us to flexibly capture complex interactions among variables beyond pairwise product. We propose two $\ell_1$-norm penalized maximum likelihood estimators to learn the model parameters from i.i.d. samples. The first one is a joint estimator which estimates all the parameters simultaneously. The second one is a node-wise conditional estimator which estimates the parameters individually for each node. For both estimators, we show that under proper conditions the extra flexibility gained in our model comes at almost no cost of statistical and computational efficiency. We demonstrate the advantages of our model over state-of-the-art methods on synthetic and real datasets.


Nonparametric Bayesian models of hierarchical structure in complex networks

arXiv.org Machine Learning

Analyzing and understanding the structure of complex relational data is important in many applications including analysis of the connectivity in the human brain. Such networks can have prominent patterns on different scales, calling for a hierarchically structured model. We propose two non-parametric Bayesian hierarchical network models based on Gibbs fragmentation tree priors, and demonstrate their ability to capture nested patterns in simulated networks. On real networks we demonstrate detection of hierarchical structure and show predictive performance on par with the state of the art. We envision that our methods can be employed in exploratory analysis of large scale complex networks for example to model human brain connectivity.


Streaming Variational Bayes

arXiv.org Machine Learning

We present SDA-Bayes, a framework for (S)treaming, (D)istributed, (A)synchronous computation of a Bayesian posterior. The framework makes streaming updates to the estimated posterior according to a user-specified approximation batch primitive. We demonstrate the usefulness of our framework, with variational Bayes (VB) as the primitive, by fitting the latent Dirichlet allocation model to two large-scale document collections. We demonstrate the advantages of our algorithm over stochastic variational inference (SVI) by comparing the two after a single pass through a known amount of data---a case where SVI may be applied---and in the streaming setting, where SVI does not apply.


A survey on independence-based Markov networks learning

arXiv.org Artificial Intelligence

Name Reference Comments KS Koller and Sahami (1996) - Not Sound - The first one of this type - Requires specifying MB size in advance GS Margaritis and Thrun (2000) - Sound in theory - Proposed to learn Bayesian network via the induction of neighbors of each variable - First proved such kind of algorithm - Works in two phases: grow and shrink IAMB and its variants Tsamardinos et al (2003) - Sound in theory - Actually variant of GS - Simple to implement - Time efficient - Very poor on data efficiency - IAMB's variants achieve better performance on data efficiency than IAMB HITON-PC/MB Aliferis et al (2003) - Not sound - Another trial to make use of the topology information to enhance data efficiency - Data efficiency comparable to IAMB - Much slower compared to IAMB Fast-IAMB Yaramakala and Margaritis (2005) - Sound in theory - No fundamental difference as compared to IAMB - Adds candidates more greedily to speed up the learning - Still poor on data efficiency performance MMPC/MB Tsamardinos et al (2006) - Not sound - The first to make use of the underling topology information - Much more data efficient compared to IAMB - Much slower compared to IAMB PCMB Peña et al (2007) - Sound in theory - Data efficient by making use of topology information - Poor on time efficiency - Distinguish spouses from parents/children - Distinguish some children from parents/children IPC-MB Fu and Desmarais (2008) - Sound in theory - Most data efficient compared with previous algorithms - Much faster than PCMB on computing - Distinguish spouses from parents/children - Distinguish some children from parents/children - Best tradeoff among this family of algorithms


Nonparametric Bayes dynamic modeling of relational data

arXiv.org Machine Learning

Symmetric binary matrices representing relations among entities are commonly collected in many areas. Our focus is on dynamically evolving binary relational matrices, with interest being in inference on the relationship structure and prediction. We propose a nonparametric Bayesian dynamic model, which reduces dimensionality in characterizing the binary matrix through a lower-dimensional latent space representation, with the latent coordinates evolving in continuous time via Gaussian processes. By using a logistic mapping function from the probability matrix space to the latent relational space, we obtain a flexible and computational tractable formulation. Employing P\`olya-Gamma data augmentation, an efficient Gibbs sampler is developed for posterior computation, with the dimension of the latent space automatically inferred. We provide some theoretical results on flexibility of the model, and illustrate performance via simulation experiments. We also consider an application to co-movements in world financial markets.


AI Methods in Algorithmic Composition: A Comprehensive Survey

Journal of Artificial Intelligence Research

Algorithmic composition is the partial or total automation of the process of music composition by using computers. Since the 1950s, different computational techniques related to Artificial Intelligence have been used for algorithmic composition, including grammatical representations, probabilistic methods, neural networks, symbolic rule-based systems, constraint programming and evolutionary algorithms. This survey aims to be a comprehensive account of research on algorithmic composition, presenting a thorough view of the field for researchers in Artificial Intelligence.


Reasoning with Uncertainties Over Existence of Objects

AAAI Conferences

In this paper we consider planning problems in relationalMarkov processes where objects may “appear” or “disap-pear”, perhaps depending on previous actions or propertiesof other objects. For instance, problems which require to ex-plicitly generate or discover objects fall into this category. Inour formulation this requires to explicitly represent the un-certainty over the number of objects (dimensions or factors)in a dynamic Bayesian networks (DBN). Many formalisms(also existing ones) are conceivable to formulate such prob-lems. We aim at a formulation that facilitates inference andplanning. Based on a specific formulation we investigate twoinference methods—rejection sampling and reversible-jumpMCMC—to compute a posterior over the process conditionedon the first and last time slice (start and goal state). We willdiscuss properties, efficiency, and appropriateness of eachone.


Integrating Declarative Programming and Probabilistic Planning for Robots

AAAI Conferences

Mobile robots deployed in complex real-world domains typically find it difficult to process all sensor inputs or operate without substantial domain knowledge. At the same time, humans may not have the time and expertise to provide elaborateand accurate knowledge or feedback. The architecture described in this paper combines declarative programming and probabilistic sequential decision-making to address these challenges. Specifically, Answer Set Programming (ASP), a declarative programming paradigm, is combined with hierarchical partially observable Markov decision processes (POMDPs), enabling robots to: (a) represent and reason with incomplete domain knowledge, revising existing knowledge using information extracted from sensor inputs; (b) probabilistically model the uncertainty in sensor input processing and navigation; and (c) use domain knowledge to revise probabilistic beliefs, exploiting positive and negative observations to identify situations in which the assigned task can no longer be pursued. All algorithms are evaluated in simulation and on mobile robots locating target objects in indoor domains.