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 Learning Graphical Models


Simplex Deep Linear Discriminant Analysis

arXiv.org Machine Learning

We revisit Deep Linear Discriminant Analysis (Deep LDA) from a likelihood-based perspective. While classical LDA is a simple Gaussian model with linear decision boundaries, attaching an LDA head to a neural encoder raises the question of how to train the resulting deep classifier by maximum likelihood estimation (MLE). We first show that end-to-end MLE training of an unconstrained Deep LDA model ignores discrimination: when both the LDA parameters and the encoder parameters are learned jointly, the likelihood admits a degenerate solution in which some of the class clusters may heavily overlap or even collapse, and classification performance deteriorates. Batchwise moment re-estimation of the LDA parameters does not remove this failure mode. We then propose a constrained Deep LDA formulation that fixes the class means to the vertices of a regular simplex in the latent space and restricts the shared covariance to be spherical, leaving only the priors and a single variance parameter to be learned along with the encoder. Under these geometric constraints, MLE becomes stable and yields well-separated class clusters in the latent space. On images (Fashion-MNIST, CIFAR-10, CIFAR-100), the resulting Deep LDA models achieve accuracy competitive with softmax baselines while offering a simple, interpretable latent geometry that is clearly visible in two-dimensional projections.


Deep Linear Discriminant Analysis Revisited

arXiv.org Machine Learning

We show that for unconstrained Deep Linear Discriminant Analysis (LDA) classifiers, maximum-likelihood training admits pathological solutions in which class means drift together, covariances collapse, and the learned representation becomes almost non-discriminative. Conversely, cross-entropy training yields excellent accuracy but decouples the head from the underlying generative model, leading to highly inconsistent parameter estimates. To reconcile generative structure with discriminative performance, we introduce the \emph{Discriminative Negative Log-Likelihood} (DNLL) loss, which augments the LDA log-likelihood with a simple penalty on the mixture density. DNLL can be interpreted as standard LDA NLL plus a term that explicitly discourages regions where several classes are simultaneously likely. Deep LDA trained with DNLL produces clean, well-separated latent spaces, matches the test accuracy of softmax classifiers on synthetic data and standard image benchmarks, and yields substantially better calibrated predictive probabilities, restoring a coherent probabilistic interpretation to deep discriminant models.


Multiscale replay: A robust algorithm for stochastic variational inequalities with a Markovian buffer

arXiv.org Machine Learning

We introduce the Multiscale Experience Replay (MER) algorithm for solving a class of stochastic variational inequalities (VIs) in settings where samples are generated from a Markov chain and we have access to a memory buffer to store them. Rather than uniformly sampling from the buffer, MER utilizes a multi-scale sampling scheme to emulate the behavior of VI algorithms designed for independent and identically distributed samples, overcoming bias in the de facto serial scheme and thereby accelerating convergence. Notably, unlike standard sample-skipping variants of serial algorithms, MER is robust in that it achieves this acceleration in iteration complexity whenever possible, and without requiring knowledge of the mixing time of the Markov chain. We also discuss applications of MER, particularly in policy evaluation with temporal difference learning and in training generalized linear models with dependent data.


Fast Gibbs Sampling on Bayesian Hidden Markov Model with Missing Observations

arXiv.org Machine Learning

The Hidden Markov Model (HMM) is a widely-used statistical model for handling sequential data. However, the presence of missing observations in real-world datasets often complicates the application of the model. The EM algorithm and Gibbs samplers can be used to estimate the model, yet suffering from various problems including non-convexity, high computational complexity and slow mixing. In this paper, we propose a collapsed Gibbs sampler that efficiently samples from HMMs' posterior by integrating out both the missing observations and the corresponding latent states. The proposed sampler is fast due to its three advantages. First, it achieves an estimation accuracy that is comparable to existing methods. Second, it can produce a larger Effective Sample Size (ESS) per iteration, which can be justified theoretically and numerically. Third, when the number of missing entries is large, the sampler has a significant smaller computational complexity per iteration compared to other methods, thus is faster computationally. In summary, the proposed sampling algorithm is fast both computationally and theoretically and is particularly advantageous when there are a lot of missing entries. Finally, empirical evaluations based on numerical simulations and real data analysis demonstrate that the proposed algorithm consistently outperforms existing algorithms in terms of time complexity and sampling efficiency (measured in ESS).


Evidence Slopes and Effective Dimension in Singular Linear Models

arXiv.org Machine Learning

Bayesian model selection commonly relies on Laplace approximation or the Bayesian Information Criterion (BIC), which assume that the effective model dimension equals the number of parameters. Singular learning theory replaces this assumption with the real log canonical threshold (RLCT), an effective dimension that can be strictly smaller in overparameterized or rank-deficient models. We study linear-Gaussian rank models and linear subspace (dictionary) models in which the exact marginal likelihood is available in closed form and the RLCT is analytically tractable. In this setting, we show theoretically and empirically that the error of Laplace/BIC grows linearly with (d/2 minus lambda) times log n, where d is the ambient parameter dimension and lambda is the RLCT. An RLCT-aware correction recovers the correct evidence slope and is invariant to overcomplete reparameterizations that represent the same data subspace. Our results provide a concrete finite-sample characterization of Laplace failure in singular models and demonstrate that evidence slopes can be used as a practical estimator of effective dimension in simple linear settings.


Adaptive Conformal Prediction via Bayesian Uncertainty Weighting for Hierarchical Healthcare Data

arXiv.org Machine Learning

Clinical decision-making demands uncertainty quantification that provides both distribution-free coverage guarantees and risk-adaptive precision, requirements that existing methods fail to jointly satisfy. We present a hybrid Bayesian-conformal framework that addresses this fundamental limitation in healthcare predictions. Our approach integrates Bayesian hierarchical random forests with group-aware con-formal calibration, using posterior uncertainties to weight conformity scores while maintaining rigorous coverage validity. Evaluated on 61,538 admissions across 3,793 U.S. hospitals and 4 regions, our method achieves target coverage (94.3% vs 95% target) with adaptive precision: 21% narrower intervals for low-uncertainty cases while appropriately widening for high-risk predictions. Critically, we demonstrate that well-calibrated Bayesian uncertainties alone severely under-cover (14.1%), highlighting the necessity of our hybrid approach. This framework enables risk-stratified clinical protocols, efficient resource planning for high-confidence predictions, and conservative allocation with enhanced oversight for uncertain cases, providing uncertainty-aware decision support across diverse healthcare settings.


Revisiting Weighted Strategy for Non-stationary Parametric Bandits and MDPs

arXiv.org Machine Learning

Abstract--Non-stationary parametric bandits have attracted much attention recently. There are three principled ways to deal with non-stationarity, including sliding-window, weighted, and restart strategies. As many non-stationary environments exhibit gradual drifting patterns, the weighted strategy is commonly adopted in real-world applications. However, previous theoretical studies show that its analysis is more involved and the algorithms are either computationally less efficient or statistically subopti-mal. This paper revisits the weighted strategy for non-stationary parametric bandits. In linear bandits (LB), we discover that this undesirable feature is due to an inadequate regret analysis, which results in an overly complex algorithm design. We propose a refined analysis framework, which simplifies the derivation and, importantly, produces a simpler weight-based algorithm that is as efficient as window/restart-based algorithms while retaining the same regret as previous studies. Furthermore, our new framework can be used to improve regret bounds of other parametric bandits, including Generalized Linear Bandits (GLB) and Self-Concordant Bandits (SCB). Moreover, we extend our framework to non-stationary Markov Decision Processes (MDPs) with function approximation, focusing on Linear Mixture MDP and Multinomial Logit (MNL) Mixture MDP . For both classes, we propose algorithms based on the weighted strategy and establish dynamic regret guarantees using our analysis framework. Index T erms--dynamic regret, non-stationary bandits, discounted factor, online MDPs, function approximation. ON-ST A TIONARY parametric bandits model the sequential decision-making problems where the reward distributions of each arm are structured with an unknown time-varying parameter, which have been extensively studied in recent years [1]-[11] due to their significance in many real-world non-stationary online applications such as recommendation systems [12], [13].


Laplacian Kernelized Bandit

arXiv.org Machine Learning

We study multi-user contextual bandits where users are related by a graph and their reward functions exhibit both non-linear behavior and graph homophily. We introduce a principled joint penalty for the collection of user reward functions $\{f_u\}$, combining a graph smoothness term based on RKHS distances with an individual roughness penalty. Our central contribution is proving that this penalty is equivalent to the squared norm within a single, unified \emph{multi-user RKHS}. We explicitly derive its reproducing kernel, which elegantly fuses the graph Laplacian with the base arm kernel. This unification allows us to reframe the problem as learning a single ''lifted'' function, enabling the design of principled algorithms, \texttt{LK-GP-UCB} and \texttt{LK-GP-TS}, that leverage Gaussian Process posteriors over this new kernel for exploration. We provide high-probability regret bounds that scale with an \emph{effective dimension} of the multi-user kernel, replacing dependencies on user count or ambient dimension. Empirically, our methods outperform strong linear and non-graph-aware baselines in non-linear settings and remain competitive even when the true rewards are linear. Our work delivers a unified, theoretically grounded, and practical framework that bridges Laplacian regularization with kernelized bandits for structured exploration.


Categorical Reparameterization with Denoising Diffusion models

arXiv.org Machine Learning

Gradient-based optimization with categorical variables typically relies on score-function estimators, which are unbiased but noisy, or on continuous relaxations that replace the discrete distribution with a smooth surrogate admitting a pathwise (reparameterized) gradient, at the cost of optimizing a biased, temperature-dependent objective. In this paper, we extend this family of relaxations by introducing a diffusion-based soft reparameterization for categorical distributions. For these distributions, the denoiser under a Gaussian noising process admits a closed form and can be computed efficiently, yielding a training-free diffusion sampler through which we can backpropagate. Our experiments show that the proposed reparameterization trick yields competitive or improved optimization performance on various benchmarks.


Identification and Estimation under Multiple Versions of Treatment: Mixture-of-Experts Approach

arXiv.org Machine Learning

Identification and Estimation under Multiple Versions of Treatment: Mixture-of-Experts Approach Kohei Y oshikawa Shuichi Kawano January 5, 2026 Abstract The Stable Unit Treatment Value Assumption (SUTV A) includes the condition that there are no multiple versions of treatment in causal inference. Though we could not control the implementation of treatment in observational studies, multiple versions may exist in the treatment. It has been pointed out that ignoring such multiple versions of treatment can lead to biased estimates of causal effects, but a causal inference framework that explicitly deals with the unbiased identification and estimation of version-specific causal effects has not been fully developed yet. Thus, obtaining a deeper understanding for mechanisms of the complex treatments is difficult. In this paper, we introduce the Mixture-of-Experts framework into causal inference and develop a methodology for estimating the causal effects of latent versions. This approach enables explicit estimation of version-specific causal effects even if the versions are not observed. Numerical experiments demonstrate the effectiveness of the proposed method. Keywords causal inference multiple versions of treatment compound treatments mixture-of-experts EM algorithm 1 Introduction In the theory of causal inference, a fundamental starting point is the potential outcomes framework since Rubin (1980), whose core assumption is the Stable Unit Treatment Value Assumption (SUTV A).