Learning Graphical Models
Regime-Adaptive Bayesian Optimization via Dirichlet Process Mixtures of Gaussian Processes
Zhang, Yan, Liu, Xuefeng, Chen, Sipeng, Ranftl, Sascha, Liu, Chong, Li, Shibo
Standard Bayesian Optimization (BO) assumes uniform smoothness across the search space an assumption violated in multi-regime problems such as molecular conformation search through distinct energy basins or drug discovery across heterogeneous molecular scaffolds. A single GP either oversmooths sharp transitions or hallucinates noise in smooth regions, yielding miscalibrated uncertainty. We propose RAMBO, a Dirichlet Process Mixture of Gaussian Processes that automatically discovers latent regimes during optimization, each modeled by an independent GP with locally-optimized hyperparameters. We derive collapsed Gibbs sampling that analytically marginalizes latent functions for efficient inference, and introduce adaptive concentration parameter scheduling for coarse-to-fine regime discovery. Our acquisition functions decompose uncertainty into intra-regime and inter-regime components. Experiments on synthetic benchmarks and real-world applications, including molecular conformer optimization, virtual screening for drug discovery, and fusion reactor design, demonstrate consistent improvements over state-of-the-art baselines on multi-regime objectives.
Classifier Calibration at Scale: An Empirical Study of Model-Agnostic Post-Hoc Methods
Manokhin, Valery, Grønhaug, Daniel
We study model-agnostic post-hoc calibration methods intended to improve probabilistic predictions in supervised binary classification on real i.i.d. tabular data, with particular emphasis on conformal and Venn-based approaches that provide distribution-free validity guarantees under exchangeability. We benchmark 21 widely used classifiers, including linear models, SVMs, tree ensembles (CatBoost, XGBoost, LightGBM), and modern tabular neural and foundation models, on binary tasks from the TabArena-v0.1 suite using randomized, stratified five-fold cross-validation with a held-out test fold. Five calibrators; Isotonic regression, Platt scaling, Beta calibration, Venn-Abers predictors, and Pearsonify are trained on a separate calibration split and applied to test predictions. Calibration is evaluated using proper scoring rules (log-loss and Brier score) and diagnostic measures (Spiegelhalter's Z, ECE, and ECI), alongside discrimination (AUC-ROC) and standard classification metrics. Across tasks and architectures, Venn-Abers predictors achieve the largest average reductions in log-loss, followed closely by Beta calibration, while Platt scaling exhibits weaker and less consistent effects. Beta calibration improves log-loss most frequently across tasks, whereas Venn-Abers displays fewer instances of extreme degradation and slightly more instances of extreme improvement. Importantly, we find that commonly used calibration procedures, most notably Platt scaling and isotonic regression, can systematically degrade proper scoring performance for strong modern tabular models. Overall classification performance is often preserved, but calibration effects vary substantially across datasets and architectures, and no method dominates uniformly. In expectation, all methods except Pearsonify slightly increase accuracy, but the effect is marginal, with the largest expected gain about 0.008%.
Covariate-assisted Grade of Membership Models via Shared Latent Geometry
The grade of membership model is a flexible latent variable model for analyzing multivariate categorical data through individual-level mixed membership scores. In many modern applications, auxiliary covariates are collected alongside responses and encode information about the same latent structure. Traditional approaches to incorporating such covariates typically rely on fully specified joint likelihoods, which are computationally intensive and sensitive to misspecification. We introduce a covariate-assisted grade of membership model that integrates response and covariate information by exploiting their shared low-rank simplex geometry, rather than modeling their joint distribution. We propose a likelihood-free spectral estimation procedure that combines heterogeneous data sources through a balance parameter controlling their relative contribution. To accommodate high-dimensional and heteroskedastic noise, we employ heteroskedastic principal component analysis before performing simplex-based geometric recovery. Our theoretical analysis establishes weaker identifiability conditions than those required in the covariate-free model, and further derives finite-sample, entrywise error bounds for both mixed membership scores and item parameters. These results demonstrate that auxiliary covariates can provably improve latent structure recovery, yielding faster convergence rates in high-dimensional regimes. Simulation studies and an application to educational assessment data illustrate the computational efficiency, statistical accuracy, and interpretability gains of the proposed method. The code for reproducing these results is open-source and available at \texttt{https://github.com/Toby-X/Covariate-Assisted-GoM}
Parametric Mean-Field empirical Bayes in high-dimensional linear regression
In this paper, we consider the problem of parametric empirical Bayes estimation of an i.i.d. prior in high-dimensional Bayesian linear regression, with random design. We obtain the asymptotic distribution of the variational Empirical Bayes (vEB) estimator, which approximately maximizes a variational lower bound of the intractable marginal likelihood. We characterize a sharp phase transition behavior for the vEB estimator -- namely that it is information theoretically optimal (in terms of limiting variance) up to $p=o(n^{2/3})$ while it suffers from a sub-optimal convergence rate in higher dimensions. In the first regime, i.e., when $p=o(n^{2/3})$, we show how the estimated prior can be calibrated to enable valid coordinate-wise and delocalized inference, both under the \emph{empirical Bayes posterior} and the oracle posterior. In the second regime, we propose a debiasing technique as a way to improve the performance of the vEB estimator beyond $p=o(n^{2/3})$. Extensive numerical experiments corroborate our theoretical findings.
An Empirical Study on Ensemble-Based Transfer Learning Bayesian Optimisation with Mixed Variable Types
Trinkle, Natasha, Ha, Huong, Chan, Jeffrey
Bayesian optimisation is a sample efficient method for finding a global optimum of expensive black-box objective functions. Historic datasets from related problems can be exploited to help improve performance of Bayesian optimisation by adapting transfer learning methods to various components of the Bayesian optimisation pipeline. In this study we perform an empirical analysis of various ensemble-based transfer learning Bayesian optimisation methods and pipeline components. We expand on previous work in the literature by contributing some specific pipeline components, and three new real-time transfer learning Bayesian optimisation benchmarks. In particular we propose to use a weighting strategy for ensemble surrogate model predictions based on regularised regression with weights constrained to be positive, and a related component for handling the case when transfer learning is not improving Bayesian optimisation performance. We find that in general, two components that help improve transfer learning Bayesian optimisation performance are warm start initialisation and constraining weights used with ensemble surrogate model to be positive.
On the Nonasymptotic Scaling Guarantee of Hyperparameter Estimation in Inhomogeneous, Weakly-Dependent Complex Network Dynamical Systems
Yu, Yi, Hou, Yubo, Wang, Yinchong, Zhang, Nan, Feng, Jianfeng, Lu, Wenlian
Hierarchical Bayesian models are increasingly used in large, inhomogeneous complex network dynamical systems by modeling parameters as draws from a hyperparameter-governed distribution. However, theoretical guarantees for these estimates as the system size grows have been lacking. A critical concern is that hyperparameter estimation may diverge for larger networks, undermining the model's reliability. Formulating the system's evolution in a measure transport perspective, we propose a theoretical framework for estimating hyperparameters with mean-type observations, which are prevalent in many scientific applications. Our primary contribution is a nonasymptotic bound for the deviation of estimate of hyperparameters in inhomogeneous complex network dynamical systems with respect to network population size, which is established for a general family of optimization algorithms within a fixed observation duration. While we firstly establish a consistency result for systems with independent nodes, our main result extends this guarantee to the more challenging and realistic setting of weakly-dependent nodes. We validate our theoretical findings with numerical experiments on two representative models: a Susceptible-Infected-Susceptible model and a Spiking Neuronal Network model. In both cases, the results confirm that the estimation error decreases as the network population size increases, aligning with our theoretical guarantees. This research proposes the foundational theory to ensure that hierarchical Bayesian methods are statistically consistent for large-scale inhomogeneous systems, filling a gap in this area of theoretical research and justifying their application in practice.
A tensor network formalism for neuro-symbolic AI
Goessmann, Alex, Schütte, Janina, Fröhlich, Maximilian, Eigel, Martin
The unification of neural and symbolic approaches to artificial intelligence remains a central open challenge. In this work, we introduce a tensor network formalism, which captures sparsity principles originating in the different approaches in tensor decompositions. In particular, we describe a basis encoding scheme for functions and model neural decompositions as tensor decompositions. The proposed formalism can be applied to represent logical formulas and probability distributions as structured tensor decompositions. This unified treatment identifies tensor network contractions as a fundamental inference class and formulates efficiently scaling reasoning algorithms, originating from probability theory and propositional logic, as contraction message passing schemes. The framework enables the definition and training of hybrid logical and probabilistic models, which we call Hybrid Logic Network. The theoretical concepts are accompanied by the python library tnreason, which enables the implementation and practical use of the proposed architectures.
Statistical Reinforcement Learning in the Real World: A Survey of Challenges and Future Directions
Gazi, Asim H., Guo, Yongyi, Gao, Daiqi, Xu, Ziping, Zhang, Kelly W., Murphy, Susan A.
Reinforcement learning (RL) has achieved remarkable success in real-world decision-making across diverse domains, including gaming, robotics, online advertising, public health, and natural language processing. Despite these advances, a substantial gap remains between RL research and its deployment in many practical settings. Two recurring challenges often underlie this gap. First, many settings offer limited opportunity for the agent to interact extensively with the target environment due to practical constraints. Second, many target environments often undergo substantial changes, requiring redesign and redeployment of RL systems (e.g., advancements in science and technology that change the landscape of healthcare delivery). Addressing these challenges and bridging the gap between basic research and application requires theory and methodology that directly inform the design, implementation, and continual improvement of RL systems in real-world settings. In this paper, we frame the application of RL in practice as a three-component process: (i) online learning and optimization during deployment, (ii) post- or between-deployment offline analyses, and (iii) repeated cycles of deployment and redeployment to continually improve the RL system. We provide a narrative review of recent advances in statistical RL that address these components, including methods for maximizing data utility for between-deployment inference, enhancing sample efficiency for online learning within-deployment, and designing sequences of deployments for continual improvement. We also outline future research directions in statistical RL that are use-inspired -- aiming for impactful application of RL in practice.
Congratulations to the #AAAI2026 outstanding paper award winners
We consider the problem of modifying a description logic concept in light of models represented as pointed interpretations. We call this setting model change, and distinguish three main kinds of changes: eviction, which consists of only removing models; reception, which incorporates models; and revision, which combines removal with incorporation of models in a single operation. We introduce a formal notion of revision and argue that it does not reduce to a simple combination of eviction and reception, contrary to intuition. We provide positive and negative results on the compatibility of eviction and reception for EL-bottom and ALC description logic concepts and on the compatibility of revision for ALC concepts.
Semi-Supervised Mixture Models under the Concept of Missing at Radom with Margin Confidence and Aranda Ordaz Function
Abstract--This paper presents a semi-supervised learning framework for Gaussian mixture modelling under a Missing at Random (MAR) mechanism. T o quantify classification uncertainty, we introduce margin confidence and incorporate the Aranda-Ordaz (AO) link function to flexibly capture the asymmetric relationships between uncertainty and missing probability. Based on this formulation, we develop an efficient Expectation-Conditional Maximization (ECM) algorithm that jointly estimates all parameters appearing in both the Gaussian mixture model (GMM) and the missingness mechanism, and subsequently imputes the missing labels by a Bayesian classifier derived from the fitted mixture model. This method effectively alleviates the bias induced by ignoring the missingness mechanism while enhancing the robustness of semi-supervised learning. The resulting uncertainty-aware framework delivers reliable classification performance in realistic MAR scenarios with substantial proportions of missing labels.