Markov Models
Identification of physiological shock in intensive care units via Bayesian regime switching models
Kendall, Emmett B., Williams, Jonathan P., Storlie, Curtis B., Radosevich, Misty A., Wittwer, Erica D., Warner, Matthew A.
Detection of occult hemorrhage (i.e., internal bleeding) in patients in intensive care units (ICUs) can pose significant challenges for critical care workers. Because blood loss may not always be clinically apparent, clinicians rely on monitoring vital signs for specific trends indicative of a hemorrhage event. The inherent difficulties of diagnosing such an event can lead to late intervention by clinicians which has catastrophic consequences. Therefore, a methodology for early detection of hemorrhage has wide utility. We develop a Bayesian regime switching model (RSM) that analyzes trends in patients' vitals and labs to provide a probabilistic assessment of the underlying physiological state that a patient is in at any given time. This article is motivated by a comprehensive dataset we curated from Mayo Clinic of 33,924 real ICU patient encounters. Longitudinal response measurements are modeled as a vector autoregressive process conditional on all latent states up to the current time point, and the latent states follow a Markov process. We present a novel Bayesian sampling routine to learn the posterior probability distribution of the latent physiological states, as well as develop an approach to account for pre-ICU-admission physiological changes. A simulation and real case study illustrate the effectiveness of our approach.
Auto-differentiable data assimilation: Co-learning of states, dynamics, and filtering algorithms
Adrian, Melissa, Sanz-Alonso, Daniel, Willett, Rebecca
Data assimilation algorithms estimate the state of a dynamical system from partial observations, where the successful performance of these algorithms hinges on costly parameter tuning and on employing an accurate model for the dynamics. This paper introduces a framework for jointly learning the state, dynamics, and parameters of filtering algorithms in data assimilation through a process we refer to as auto-differentiable filtering. The framework leverages a theoretically motivated loss function that enables learning from partial, noisy observations via gradient-based optimization using auto-differentiation. We further demonstrate how several well-known data assimilation methods can be learned or tuned within this framework. To underscore the versatility of auto-differentiable filtering, we perform experiments on dynamical systems spanning multiple scientific domains, such as the Clohessy-Wiltshire equations from aerospace engineering, the Lorenz-96 system from atmospheric science, and the generalized Lotka-Volterra equations from systems biology. Finally, we provide guidelines for practitioners to customize our framework according to their observation model, accuracy requirements, and computational budget.
Rule-State Inference (RSI): A Bayesian Framework for Compliance Monitoring in Rule-Governed Domains
Existing machine learning frameworks for compliance monitoring -- Markov Logic Networks, Probabilistic Soft Logic, supervised models -- share a fundamental paradigm: they treat observed data as ground truth and attempt to approximate rules from it. This assumption breaks down in rule-governed domains such as taxation or regulatory compliance, where authoritative rules are known a priori and the true challenge is to infer the latent state of rule activation, compliance, and parametric drift from partial and noisy observations. We propose Rule-State Inference (RSI), a Bayesian framework that inverts this paradigm by encoding regulatory rules as structured priors and casting compliance monitoring as posterior inference over a latent rule-state space S = {(a_i, c_i, delta_i)}, where a_i captures rule activation, c_i models the compliance rate, and delta_i quantifies parametric drift. We prove three theoretical guarantees: (T1) RSI absorbs regulatory changes in O(1) time via a prior ratio correction, independently of dataset size; (T2) the posterior is Bernstein-von Mises consistent, converging to the true rule state as observations accumulate; (T3) mean-field variational inference monotonically maximizes the Evidence Lower BOund (ELBO). We instantiate RSI on the Togolese fiscal system and introduce RSI-Togo-Fiscal-Synthetic v1.0, a benchmark of 2,000 synthetic enterprises grounded in real OTR regulatory rules (2022-2025). Without any labeled training data, RSI achieves F1=0.519 and AUC=0.599, while absorbing regulatory changes in under 1ms versus 683-1082ms for full model retraining -- at least a 600x speedup.
Infinite Hidden Semi-Markov Modulated Interaction Point Process
matt zhang, Peng Lin, Peng Lin, Ting Guo, Yang Wang, Yang Wang, Fang Chen
The correlation between events is ubiquitous and important for temporal events modelling. In many cases, the correlation exists between not only events' emitted observations, but also their arrival times. State space models (e.g., hidden Markov model) and stochastic interaction point process models (e.g., Hawkes process) have been studied extensively yet separately for the two types of correlations in the past. In this paper, we propose a Bayesian nonparametric approach that considers both types of correlations via unifying and generalizing the hidden semiMarkov model and interaction point process model. The proposed approach can simultaneously model both the observations and arrival times of temporal events, and automatically determine the number of latent states from data.
On Mixtures of Markov Chains
We study the problem of reconstructing a mixture of Markov chains from the trajectories generated by random walks through the state space. Under mild nondegeneracy conditions, we show that we can uniquely reconstruct the underlying chains by only considering trajectories of length three, which represent triples of states. Our algorithm is spectral in nature, and is easy to implement.
Scaling Factorial Hidden Markov Models: Stochastic Variational Inference without Messages
Yin Cheng Ng, Pawel M. Chilinski, Ricardo Silva
Factorial Hidden Markov Models (FHMMs) are powerful models for sequential data but they do not scale well with long sequences. We propose a scalable inference and learning algorithm for FHMMs that draws on ideas from the stochastic variational inference, neural network and copula literatures. Unlike existing approaches, the proposed algorithm requires no message passing procedure among latent variables and can be distributed to a network of computers to speed up learning. Our experiments corroborate that the proposed algorithm does not introduce further approximation bias compared to the proven structured mean-field algorithm, and achieves better performance with long sequences and large FHMMs.
Blazing the trails before beating the path: Sample-efficient Monte-Carlo planning
Jean-Bastien Grill, Michal Valko, Remi Munos
You are a robot and you live in a Markov decision process (MDP) with a finite or an infinite number of transitions from state-action to next states. You got brains and so you plan before you act. Luckily, your roboparents equipped you with a generative model to do some Monte-Carlo planning. The world is waiting for you and you have no time to waste. You want your planning to be efficient.