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DiBS: Differentiable Bayesian Structure Learning

Neural Information Processing Systems

Bayesian structure learning allows inferring Bayesian network structure from data while reasoning about the epistemic uncertainty---a key element towards enabling active causal discovery and designing interventions in real world systems. In this work, we propose a general, fully differentiable framework for Bayesian structure learning (DiBS) that operates in the continuous space of a latent probabilistic graph representation. Contrary to existing work, DiBS is agnostic to the form of the local conditional distributions and allows for joint posterior inference of both the graph structure and the conditional distribution parameters. This makes our formulation directly applicable to posterior inference of nonstandard Bayesian network models, e.g., with nonlinear dependencies encoded by neural networks. Using DiBS, we devise an efficient, general purpose variational inference method for approximating distributions over structural models.


Comparative Analysis of Hand-Crafted and Machine-Driven Histopathological Features for Prostate Cancer Classification and Segmentation

arXiv.org Artificial Intelligence

Histopathological image analysis is a reliable method for prostate cancer identification. In this paper, we present a comparative analysis of two approaches for segmenting glandular structures in prostate images to automate Gleason grading. The first approach utilizes a hand-crafted learning technique, combining Gray Level Co-Occurrence Matrix (GLCM) and Local Binary Pattern (LBP) texture descriptors to highlight spatial dependencies and minimize information loss at the pixel level. For machine driven feature extraction, we employ a U-Net convolutional neural network to perform semantic segmentation of prostate gland stroma tissue. Support vector machine-based learning of hand-crafted features achieves impressive classification accuracies of 99.0% and 95.1% for GLCM and LBP, respectively, while the U-Net-based machine-driven features attain 94% accuracy. Furthermore, a comparative analysis demonstrates superior segmentation quality for histopathological grades 1, 2, 3, and 4 using the U-Net approach, as assessed by Jaccard and Dice metrics. This work underscores the utility of machine-driven features in clinical applications that rely on automated pixel-level segmentation in prostate tissue images.


An analysis of the combination of feature selection and machine learning methods for an accurate and timely detection of lung cancer

arXiv.org Artificial Intelligence

One of the deadliest cancers, lung cancer necessitates an early and precise diagnosis. Because patients have a better chance of recovering, early identification of lung cancer is crucial. This review looks at how to diagnose lung cancer using sophisticated machine learning techniques like Random Forest (RF) and Support Vector Machine (SVM). The Chi-squared test is one feature selection strategy that has been successfully applied to find related features and enhance model performance. The findings demonstrate that these techniques can improve detection efficiency and accuracy while also assisting in runtime reduction. This study produces recommendations for further research as well as ideas to enhance diagnostic techniques. In order to improve healthcare and create automated methods for detecting lung cancer, this research is a critical first step.


Maximum Likelihood Training of Implicit Nonlinear Diffusion Model

Neural Information Processing Systems

Whereas diverse variations of diffusion models exist, extending the linear diffusion into a nonlinear diffusion process is investigated by very few works. The nonlinearity effect has been hardly understood, but intuitively, there would be promising diffusion patterns to efficiently train the generative distribution towards the data distribution. This paper introduces a data-adaptive nonlinear diffusion process for score-based diffusion models. The proposed Implicit Nonlinear Diffusion Model (INDM) learns by combining a normalizing flow and a diffusion process. This flow network is key to forming a nonlinear diffusion, as the nonlinearity depends on the flow network.


Pseudo-Spherical Contrastive Divergence

Neural Information Processing Systems

However, due to the intractable partition function, they are typically trained via contrastive divergence for maximum likelihood estimation. In this paper, we propose pseudo-spherical contrastive divergence (PS-CD) to generalize maximum likelihood learning of EBMs. PS-CD is derived from the maximization of a family of strictly proper homogeneous scoring rules, which avoids the computation of the intractable partition function and provides a generalized family of learning objectives that include contrastive divergence as a special case. Moreover, PS-CD allows us to flexibly choose various learning objectives to train EBMs without additional computational cost or variational minimax optimization. Theoretical analysis on the proposed method and extensive experiments on both synthetic data and commonly used image datasets demonstrate the effectiveness and modeling flexibility of PS-CD, as well as its robustness to data contamination, thus showing its superiority over maximum likelihood and f -EBMs.


Joint Bayesian Inference of Graphical Structure and Parameters with a Single Generative Flow Network

Neural Information Processing Systems

Generative Flow Networks (GFlowNets), a class of generative models over discrete and structured sample spaces, have been previously applied to the problem of inferring the marginal posterior distribution over the directed acyclic graph (DAG) of a Bayesian Network, given a dataset of observations. Based on recent advances extending this framework to non-discrete sample spaces, we propose in this paper to approximate the joint posterior over not only the structure of a Bayesian Network, but also the parameters of its conditional probability distributions. We use a single GFlowNet whose sampling policy follows a two-phase process: the DAG is first generated sequentially one edge at a time, and then the corresponding parameters are picked once the full structure is known. Since the parameters are included in the posterior distribution, this leaves more flexibility for the local probability models of the Bayesian Network, making our approach applicable even to non-linear models parametrized by neural networks. We show that our method, called JSP-GFN, offers an accurate approximation of the joint posterior, while comparing favorably against existing methods on both simulated and real data.


Finite-Sample Maximum Likelihood Estimation of Location

Neural Information Processing Systems

We consider 1-dimensional location estimation, where we estimate a parameter \lambda from n samples \lambda \eta_i, with each \eta_i drawn i.i.d. For fixed f the maximum-likelihood estimate (MLE) is well-known to be optimal in the limit as n \to \infty: it is asymptotically normal with variance matching the Cramer-Rao lower bound of \frac{1}{n\mathcal{I}}, where \mathcal{I} is the Fisher information of f . However, this bound does not hold for finite n, or when f varies with n . We show for arbitrary f and n that one can recover a similar theory based on the Fisher information of a smoothed version of f, where the smoothing radius decays with n .


Variational Gaussian processes for linear inverse problems

Neural Information Processing Systems

By now Bayesian methods are routinely used in practice for solving inverse problems. In inverse problems the parameter or signal of interest is observed only indirectly, as an image of a given map, and the observations are typically further corrupted with noise. Bayes offers a natural way to regularize these problems via the prior distribution and provides a probabilistic solution, quantifying the remaining uncertainty in the problem. However, the computational costs of standard, sampling based Bayesian approaches can be overly large in such complex models. Therefore, in practice variational Bayes is becoming increasingly popular. Nevertheless, the theoretical understanding of these methods is still relatively limited, especially in context of inverse problems.In our analysis we investigate variational Bayesian methods for Gaussian process priors to solve linear inverse problems.


Learning Energy-based Model via Dual-MCMC Teaching

Neural Information Processing Systems

This paper studies the fundamental learning problem of the energy-based model (EBM). Learning the EBM can be achieved using the maximum likelihood estimation (MLE), which typically involves the Markov Chain Monte Carlo (MCMC) sampling, such as the Langevin dynamics. However, the noise-initialized Langevin dynamics can be challenging in practice and hard to mix. This motivates the exploration of joint training with the generator model where the generator model serves as a complementary model to bypass MCMC sampling. However, such a method can be less accurate than the MCMC and result in biased EBM learning.


Hedging as Reward Augmentation in Probabilistic Graphical Models

Neural Information Processing Systems

We argue that hedging is an activity that human and machine agents should engage in more broadly, even when the agent's value is not necessarily in monetary units. In this paper, we propose a decision-theoretic view of hedging based on augmenting a probabilistic graphical model -- specifically a Bayesian network or an influence diagram -- with a reward. Hedging is therefore posed as a particular kind of graph manipulation, and can be viewed as analogous to control/intervention and information gathering related analysis. Effective hedging occurs when a risk-averse agent finds opportunity to balance uncertain rewards in their current situation. We illustrate the concepts with examples and counter-examples, and conduct experiments to demonstrate the properties and applicability of the proposed computational tools that enable agents to proactively identify potential hedging opportunities in real-world situations.