We propose using recognition networks for approximate inference inBayesian networks (BNs). A recognition network is a multilayerperception (MLP) trained to predict posterior marginals given observedevidence in a particular BN. The input to the MLP is a vector of thestates of the evidential nodes. The activity of an output unit isinterpreted as a prediction of the posterior marginal of thecorresponding variable. The MLP is trained using samples generated fromthe corresponding BN.We evaluate a recognition network that was trained to do inference ina large Bayesian network, similar in structure and complexity to theQuick Medical Reference, Decision Theoretic (QMR-DT). Our networkis a binary, two-layer, noisy-OR network containing over 4000 potentially observable nodes and over 600 unobservable, hidden nodes. Inreal medical diagnosis, most observables are unavailable, and there isa complex and unknown bias that selects which ones are provided. Weincorporate a very basic type of selection bias in our network: a knownpreference that available observables are positive rather than negative.Even this simple bias has a significant effect on the posterior. We compare the performance of our recognition network tostate-of-the-art approximate inference algorithms on a large set oftest cases. In order to evaluate the effect of our simplistic modelof the selection bias, we evaluate algorithms using a variety ofincorrectly modeled observation biases. Recognition networks performwell using both correct and incorrect observation biases.

In this paper we compare three different architectures for the evaluation of influence diagrams: HUGIN, Shafer-Shenoy, and Lazy Evaluation architecture. The computational complexity of the architectures are compared on the LImited Memory Influence Diagram (LIMID): a diagram where only the requiste information for the computation of the optimal policies are depicted. Because the requsite information is explicitly represented in the LIMID the evaluation can take advantage of it, and significant savings in computational can be obtained. In this paper we show how the obtained savings is considerably increased when the computations performed on the LIMID is according to the Lazy Evaluation scheme.

With the advance of efficient analytical methods for sensitivity analysis ofprobabilistic networks, the interest in the sensitivities revealed by real-life networks is rekindled. As the amount of data resulting from a sensitivity analysis of even a moderately-sized network is alreadyoverwhelming, methods for extracting relevant information are called for. One such methodis to study the derivative of the sensitivity functions yielded for a network's parameters. We further propose to build upon the concept of admissible deviation, that is, the extent to which a parameter can deviate from the true value without inducing a change in the most likely outcome. We illustrate these concepts by means of a sensitivity analysis of a real-life probabilistic network in oncology.

A serious problem in learning probabilistic models is the presence of hidden variables. These variables are not observed, yet interact with several of the observed variables. Detecting hidden variables poses two problems: determining the relations to other variables in the model and determining the number of states of the hidden variable. In this paper, we address the latter problem in the context of Bayesian networks. We describe an approach that utilizes a score-based agglomerative state-clustering. As we show, this approach allows us to efficiently evaluate models with a range of cardinalities for the hidden variable. We show how to extend this procedure to deal with multiple interacting hidden variables. We demonstrate the effectiveness of this approach by evaluating it on synthetic and real-life data. We show that our approach learns models with hidden variables that generalize better and have better structure than previous approaches.

We present a general framework for defining priors on model structure and sampling from the posterior using the Metropolis-Hastings algorithm. The key idea is that structure priors are defined via a probability tree and that the proposal mechanism for the Metropolis-Hastings algorithm operates by traversing this tree, thereby defining a cheaply computable acceptance probability. We have applied this approach to Bayesian net structure learning using a number of priors and tree traversal strategies. Our results show that these must be chosen appropriately for this approach to be successful.

Graphical Markov models determined by acyclic digraphs (ADGs), also called directed acyclic graphs (DAGs), are widely studied in statistics, computer science (as Bayesian networks), operations research (as influence diagrams), and many related fields. Because different ADGs may determine the same Markov equivalence class, it long has been of interest to determine the efficiency gained in model specification and search by working directly with Markov equivalence classes of ADGs rather than with ADGs themselves. A computer program was written to enumerate the equivalence classes of ADG models as specified by Pearl & Verma's equivalence criterion. The program counted equivalence classes for models up to and including 10 vertices. The ratio of number of classes to ADGs appears to approach an asymptote of about 0.267. Classes were analyzed according to number of edges and class size. By edges, the distribution of number of classes approaches a Gaussian shape. By class size, classes of size 1 are most common, with the proportions for larger sizes initially decreasing but then following a more irregular pattern. The maximum number of classes generated by any undirected graph was found to increase approximately factorially. The program also includes a new variation of orderly algorithm for generating undirected graphs.

A novel method for estimating Bayesian network (BN) parameters from data is presented which provides improved performance on test data. Previous research has shown the value of representing conditional probability distributions (CPDs) via neural networks(Neal 1992), noisy-OR gates (Neal 1992, Diez 1993)and decision trees (Friedman and Goldszmidt 1996).The Bernoulli mixture network (BMN) explicitly represents the CPDs of discrete BN nodes as mixtures of local distributions,each having a different set of parents.This increases the space of possible structures which can be considered,enabling the CPDs to have finer-grained dependencies.The resulting estimation procedure induces a modelthat is better able to emulate the underlying interactions occurring in the data than conventional conditional Bernoulli network models.The results for artificially generated data indicate that overfitting is best reduced by restricting the complexity of candidate mixture substructures local to each node. Furthermore, mixtures of very simple substructures can perform almost as well as more complex ones.The BMN is also applied to data collected from an online adventure game with an application to keyhole plan recognition. The results show that the BMN-based model brings a dramatic improvement in performance over a conventional BN model.

We present two sampling algorithms for probabilistic confidence inference in Bayesian networks. These two algorithms (we call them AIS-BN-mu and AIS-BN-sigma algorithms) guarantee that estimates of posterior probabilities are with a given probability within a desired precision bound. Our algorithms are based on recent advances in sampling algorithms for (1) estimating the mean of bounded random variables and (2) adaptive importance sampling in Bayesian networks. In addition to a simple stopping rule for sampling that they provide, the AIS-BN-mu and AIS-BN-sigma algorithms are capable of guiding the learning process in the AIS-BN algorithm. An empirical evaluation of the proposed algorithms shows excellent performance, even for very unlikely evidence.

Most successful Bayesian network (BN) applications to datehave been built through knowledge elicitation from experts.This is difficult and time consuming, which has lead to recentinterest in automated methods for learning BNs from data. We present a case study in the construction of a BN in anintelligent tutoring application, specifically decimal misconceptions. Wedescribe the BN construction using expert elicitation and then investigate how certainexisting automated knowledge discovery methods might support the BN knowledge engineering process.

This paper considers the problem of knowledge-based model construction in the presence of uncertainty about the association of domain entities to random variables. Multi-entity Bayesian networks (MEBNs) are defined as a representation for knowledge in domains characterized by uncertainty in the number of relevant entities, their interrelationships, and their association with observables. An MEBN implicitly specifies a probability distribution in terms of a hierarchically structured collection of Bayesian network fragments that together encode a joint probability distribution over arbitrarily many interrelated hypotheses. Although a finite query-complete model can always be constructed, association uncertainty typically makes exact model construction and evaluation intractable. The objective of hypothesis management is to balance tractability against accuracy. We describe an application to the problem of using intelligence reports to infer the organization and activities of groups of military vehicles. Our approach is compared to related work in the tracking and fusion literature.