It has been shown that AIC-type criteria are asymptotically efficient selectors of the tuning parameter in non-concave penalized regression methods under the assumption that the population variance is known or that a consistent estimator is available. We relax this assumption to prove that AIC itself is asymptotically efficient and we study its performance in finite samples. In classical regression, it is known that AIC tends to select overly complex models when the dimension of the maximum candidate model is large relative to the sample size. Simulation studies suggest that AIC suffers from the same shortcomings when used in penalized regression. We therefore propose the use of the classical corrected AIC (AICc) as an alternative and prove that it maintains the desired asymptotic properties. To broaden our results, we further prove the efficiency of AIC for penalized likelihood methods in the context of generalized linear models with no dispersion parameter. Similar results exist in the literature but only for a restricted set of candidate models. By employing results from the classical literature on maximum-likelihood estimation in misspecified models, we are able to establish this result for a general set of candidate models. We use simulations to assess the performance of AIC and AICc, as well as that of other selectors, in finite samples for both SCAD-penalized and Lasso regressions and a real data example is considered.

This paper re-examines the problem of parameter estimation in Bayesian networks with missing values and hidden variables from the perspective of recent work in on-line learning [Kivinen & Warmuth, 1994]. We provide a unified framework for parameter estimation that encompasses both on-line learning, where the model is continuously adapted to new data cases as they arrive, and the more traditional batch learning, where a pre-accumulated set of samples is used in a one-time model selection process. In the batch case, our framework encompasses both the gradient projection algorithm and the EM algorithm for Bayesian networks. The framework also leads to new on-line and batch parameter update schemes, including a parameterized version of EM. We provide both empirical and theoretical results indicating that parameterized EM allows faster convergence to the maximum likelihood parameters than does standard EM.

We present a probabilistic method for linking multiple datafiles. This task is not trivial in the absence of unique identifiers for the individuals recorded. This is a common scenario when linking census data to coverage measurement surveys for census coverage evaluation, and in general when multiple record-systems need to be integrated for posterior analysis. Our method generalizes the Fellegi-Sunter theory for linking records from two datafiles and its modern implementations. The multiple record linkage goal is to classify the record K-tuples coming from K datafiles according to the different matching patterns. Our method incorporates the transitivity of agreement in the computation of the data used to model matching probabilities. We use a mixture model to fit matching probabilities via maximum likelihood using the EM algorithm. We present a method to decide the record K-tuples membership to the subsets of matching patterns and we prove its optimality. We apply our method to the integration of three Colombian homicide record systems and we perform a simulation study in order to explore the performance of the method under measurement error and different scenarios. The proposed method works well and opens some directions for future research.

When performing regression or classification, we are interested in the conditional probability distribution for an outcome or class variable Y given a set of explanatoryor input variables X. We consider Bayesian models for this task. In particular, we examine a special class of models, which we call Bayesian regression/classification (BRC) models, that can be factored into independent conditional (y|x) and input (x) models. These models are convenient, because the conditional model (the portion of the full model that we care about) can be analyzed by itself. We examine the practice of transforming arbitrary Bayesian models to BRC models, and argue that this practice is often inappropriate because it ignores prior knowledge that may be important for learning. In addition, we examine Bayesian methods for learning models from data. We discuss two criteria for Bayesian model selection that are appropriate for repression/classification: one described by Spiegelhalter et al. (1993), and another by Buntine (1993). We contrast these two criteria using the prequential framework of Dawid (1984), and give sufficient conditions under which the criteria agree.

In most current applications of belief networks, domain knowledge is represented by a single belief network that applies to all problem instances in the domain. In more complex domains, problem-specific models must be constructed from a knowledge base encoding probabilistic relationships in the domain. Most work in knowledge-based model construction takes the rule as the basic unit of knowledge. We present a knowledge representation framework that permits the knowledge base designer to specify knowledge in larger semantically meaningful units which we call network fragments. Our framework provides for representation of asymmetric independence and canonical intercausal interaction. We discuss the combination of network fragments to form problem-specific models to reason about particular problem instances. The framework is illustrated using examples from the domain of military situation awareness.

There is a brief description of the probabilistic causal graph model for representing, reasoning with, and learning causal structure using Bayesian networks. It is then argued that this model is closely related to how humans reason with and learn causal structure. It is shown that studies in psychology on discounting (reasoning concerning how the presence of one cause of an effect makes another cause less probable) support the hypothesis that humans reach the same judgments as algorithms for doing inference in Bayesian networks. Next, it is shown how studies by Piaget indicate that humans learn causal structure by observing the same independencies and dependencies as those used by certain algorithms for learning the structure of a Bayesian network. Based on this indication, a subjective definition of causality is forwarded. Finally, methods for further testing the accuracy of these claims are discussed.

A new method is developed to represent probabilistic relations on multiple random events. Where previously knowledge bases containing probabilistic rules were used for this purpose, here a probability distribution over the relations is directly represented by a Bayesian network. By using a powerful way of specifying conditional probability distributions in these networks, the resulting formalism is more expressive than the previous ones. Particularly, it provides for constraints on equalities of events, and it allows to define complex, nested combination functions.

Bayesian approaches to learn the graphical structure of Bayesian Belief Networks (BBNs) from databases share the assumption that the database is complete, that is, no entry is reported as unknown. Attempts to relax this assumption involve the use of expensive iterative methods to discriminate among different structures. This paper introduces a deterministic method to learn the graphical structure of a BBN from a possibly incomplete database. Experimental evaluations show a significant robustness of this method and a remarkable independence of its execution time from the number of missing data.

Bayesian networks provide a modeling language and associated inference algorithm for stochastic domains. They have been successfully applied in a variety of medium-scale applications. However, when faced with a large complex domain, the task of modeling using Bayesian networks begins to resemble the task of programming using logical circuits. In this paper, we describe an object-oriented Bayesian network (OOBN) language, which allows complex domains to be described in terms of inter-related objects. We use a Bayesian network fragment to describe the probabilistic relations between the attributes of an object. These attributes can themselves be objects, providing a natural framework for encoding part-of hierarchies. Classes are used to provide a reusable probabilistic model which can be applied to multiple similar objects. Classes also support inheritance of model fragments from a class to a subclass, allowing the common aspects of related classes to be defined only once. Our language has clear declarative semantics: an OOBN can be interpreted as a stochastic functional program, so that it uniquely specifies a probabilistic model. We provide an inference algorithm for OOBNs, and show that much of the structural information encoded by an OOBN--particularly the encapsulation of variables within an object and the reuse of model fragments in different contexts--can also be used to speed up the inference process.

Conditioning is the generally agreed-upon method for updating probability distributions when one learns that an event is certainly true. But it has been argued that we need other rules, in particular the rule of cross-entropy minimization, to handle updates that involve uncertain information. In this paper we re-examine such a case: van Fraassen's Judy Benjamin problem, which in essence asks how one might update given the value of a conditional probability. We argue that -- contrary to the suggestions in the literature -- it is possible to use simple conditionalization in this case, and thereby obtain answers that agree fully with intuition. This contrasts with proposals such as cross-entropy, which are easier to apply but can give unsatisfactory answers. Based on the lessons from this example, we speculate on some general philosophical issues concerning probability update.