Industry
Cancer-Myth: Evaluating Large Language Models on Patient Questions with False Presuppositions
Zhu, Wang Bill, Chen, Tianqi, Yu, Xinyan Velocity, Lin, Ching Ying, Law, Jade, Jizzini, Mazen, Nieva, Jorge J., Liu, Ruishan, Jia, Robin
Cancer patients are increasingly turning to large language models (LLMs) for medical information, making it critical to assess how well these models handle complex, personalized questions. However, current medical benchmarks focus on medical exams or consumer-searched questions and do not evaluate LLMs on real patient questions with patient details. In this paper, we first have three hematology-oncology physicians evaluate cancer-related questions drawn from real patients. While LLM responses are generally accurate, the models frequently fail to recognize or address false presuppositions in the questions, posing risks to safe medical decision-making. To study this limitation systematically, we introduce Cancer-Myth, an expert-verified adversarial dataset of 585 cancer-related questions with false presuppositions. On this benchmark, no frontier LLM -- including GPT-5, Gemini-2.5-Pro, and Claude-4-Sonnet -- corrects these false presuppositions more than $43\%$ of the time. To study mitigation strategies, we further construct a 150-question Cancer-Myth-NFP set, in which physicians confirm the absence of false presuppositions. We find typical mitigation strategies, such as adding precautionary prompts with GEPA optimization, can raise accuracy on Cancer-Myth to $80\%$, but at the cost of misidentifying presuppositions in $41\%$ of Cancer-Myth-NFP questions and causing a $10\%$ relative performance drop on other medical benchmarks. These findings highlight a critical gap in the reliability of LLMs, show that prompting alone is not a reliable remedy for false presuppositions, and underscore the need for more robust safeguards in medical AI systems.
Byzantine Resilient Federated Multi-Task Representation Learning
In this paper, we propose BR-MTRL, a Byzantine-resilient multi-task representation learning framework that handles faulty or malicious agents. Our approach leverages representation learning through a shared neural network model, where all clients share fixed layers, except for a client-specific final layer. This structure captures shared features among clients while enabling individual adaptation, making it a promising approach for leveraging client data and computational power in heterogeneous federated settings to learn personalized models. To learn the model, we employ an alternating gradient descent strategy: each client optimizes its local model, updates its final layer, and sends estimates of the shared representation to a central server for aggregation. To defend against Byzantine agents, we employ two robust aggregation methods for client-server communication, Geometric Median and Krum. Our method enables personalized learning while maintaining resilience in distributed settings. We implemented the proposed algorithm in a federated testbed built using Amazon Web Services (AWS) platform and compared its performance with various benchmark algorithms and their variations. Through experiments using real-world datasets, including CIFAR-10 and FEMNIST, we demonstrated the effectiveness and robustness of our approach and its transferability to new unseen clients with limited data, even in the presence of Byzantine adversaries.
Large Scale Passenger Detection with Smartphone/Bus Implicit Interaction and Multisensory Unsupervised Cause-effect Learning
Servizi, Valentino, Persson, Dan R., Pereira, Francisco C., Villadsen, Hannah, Bækgaard, Per, Rich, Jeppe, Nielsen, Otto A.
Intelligent Transportation Systems (ITS) underpin the concept of Mobility as a Service (MaaS), which requires universal and seamless users' access across multiple public and private transportation systems while allowing operators' proportional revenue sharing. Current user sensing technologies such as Walk-in/Walk-out (WIWO) and Check-in/Check-out (CICO) have limited scalability for large-scale deployments. These limitations prevent ITS from supporting analysis, optimization, calculation of revenue sharing, and control of MaaS comfort, safety, and efficiency. We focus on the concept of implicit Be-in/Be-out (BIBO) smartphone-sensing and classification. To close the gap and enhance smartphones towards MaaS, we developed a proprietary smartphone-sensing platform collecting contemporary Bluetooth Low Energy (BLE) signals from BLE devices installed on buses and Global Positioning System (GPS) locations of both buses and smartphones. To enable the training of a model based on GPS features against the BLE pseudo-label, we propose the Cause-Effect Multitask Wasserstein Autoencoder (CEMWA). CEMWA combines and extends several frameworks around Wasserstein autoencoders and neural networks. As a dimensionality reduction tool, CEMWA obtains an auto-validated representation of a latent space describing users' smartphones within the transport system. This representation allows BIBO clustering via DBSCAN. We perform an ablation study of CEMWA's alternative architectures and benchmark against the best available supervised methods. We analyze performance's sensitivity to label quality. Under the naïve assumption of accurate ground truth, XGBoost outperforms CEMWA. Although XGBoost and Random Forest prove to be tolerant to label noise, CEMWA is agnostic to label noise by design and provides the best performance with an 88\% F1 score.
Domain Adaptation Through Task Distillation
Zhou, Brady, Kalra, Nimit, Krähenbühl, Philipp
Deep networks devour millions of precisely annotated images to build their complex and powerful representations. Unfortunately, tasks like autonomous driving have virtually no real-world training data. Repeatedly crashing a car into a tree is simply too expensive. The commonly prescribed solution is simple: learn a representation in simulation and transfer it to the real world. However, this transfer is challenging since simulated and real-world visual experiences vary dramatically. Our core observation is that for certain tasks, such as image recognition, datasets are plentiful. They exist in any interesting domain, simulated or real, and are easy to label and extend. We use these recognition datasets to link up a source and target domain to transfer models between them in a task distillation framework. Our method can successfully transfer navigation policies between drastically different simulators: ViZDoom, SuperTuxKart, and CARLA. Furthermore, it shows promising results on standard domain adaptation benchmarks.
Dark-Field X-Ray Imaging Significantly Improves Deep-Learning based Detection of Synthetic Early-Stage Lung Tumors in Preclinical Models
Dey, Joyoni, Meyer, Hunter C., Taqi, Murtuza S.
Low-dose computed tomography (LDCT) is the current standard for lung cancer screening, yet its adoption and accessibility remain limited. Many regions lack LDCT infrastructure, and even among those screened, early-stage cancer detection often yield false positives, as shown in the National Lung Screening Trial (NLST) with a sensitivity of 93.8 percent and a false-positive rate of 26.6 percent. We aim to investigate whether X-ray dark-field imaging (DFI) radiograph, a technique sensitive to small-angle scatter from alveolar microstructure and less susceptible to organ shadowing, can significantly improve early-stage lung tumor detection when coupled with deep-learning segmentation. Using paired attenuation (ATTN) and DFI radiograph images of euthanized mouse lungs, we generated realistic synthetic tumors with irregular boundaries and intensity profiles consistent with physical lung contrast. A U-Net segmentation network was trained on small patches using either ATTN, DFI, or a combination of ATTN and DFI channels. Results show that the DFI-only model achieved a true-positive detection rate of 83.7 percent, compared with 51 percent for ATTN-only, while maintaining comparable specificity (90.5 versus 92.9 percent). The combined ATTN and DFI input achieved 79.6 percent sensitivity and 97.6 percent specificity. In conclusion, DFI substantially improves early-tumor detectability in comparison to standard attenuation radiography and shows potential as an accessible, low-cost, low-dose alternative for pre-clinical or limited-resource screening where LDCT is unavailable.
On Selecting Few-Shot Examples for LLM-based Code Vulnerability Detection
Hannan, Md Abdul, Ni, Ronghao, Zhang, Chi, Jia, Limin, Mangal, Ravi, Pasareanu, Corina S.
Large language models (LLMs) have demonstrated impressive capabilities for many coding tasks, including summarization, translation, completion, and code generation. However, detecting code vulnerabilities remains a challenging task for LLMs. An effective way to improve LLM performance is in-context learning (ICL) - providing few-shot examples similar to the query, along with correct answers, can improve an LLM's ability to generate correct solutions. However, choosing the few-shot examples appropriately is crucial to improving model performance. In this paper, we explore two criteria for choosing few-shot examples for ICL used in the code vulnerability detection task. The first criterion considers if the LLM (consistently) makes a mistake or not on a sample with the intuition that LLM performance on a sample is informative about its usefulness as a few-shot example. The other criterion considers similarity of the examples with the program under query and chooses few-shot examples based on the $k$-nearest neighbors to the given sample. We perform evaluations to determine the benefits of these criteria individually as well as under various combinations, using open-source models on multiple datasets.
MolChord: Structure-Sequence Alignment for Protein-Guided Drug Design
Zhang, Wei, Guo, Zekun, Xia, Yingce, Jin, Peiran, Xie, Shufang, Qin, Tao, Li, Xiang-Yang
Structure-based drug design (SBDD), which maps target proteins to candidate molecular ligands, is a fundamental task in drug discovery. Effectively aligning protein structural representations with molecular representations, and ensuring alignment between generated drugs and their pharmacological properties, remains a critical challenge. To address these challenges, we propose MolChord, which integrates two key techniques: (1) to align protein and molecule structures with their textual descriptions and sequential representations (e.g., FASTA for proteins and SMILES for molecules), we leverage NatureLM, an autoregressive model unifying text, small molecules, and proteins, as the molecule generator, alongside a diffusion-based structure encoder; and (2) to guide molecules toward desired properties, we curate a property-aware dataset by integrating preference data and refine the alignment process using Direct Preference Optimization (DPO). Experimental results on CrossDocked2020 demonstrate that our approach achieves state-of-the-art performance on key evaluation metrics, highlighting its potential as a practical tool for SBDD.
Challenges in Credit Assignment for Multi-Agent Reinforcement Learning in Open Agent Systems
Abadi, Alireza Saleh, Soh, Leen-Kiat
In the rapidly evolving field of multi-agent reinforcement learning (MARL), understanding the dynamics of open systems is crucial. Openness in MARL refers to the dynam-ic nature of agent populations, tasks, and agent types with-in a system. Specifically, there are three types of openness as reported in (Eck et al. 2023) [2]: agent openness, where agents can enter or leave the system at any time; task openness, where new tasks emerge, and existing ones evolve or disappear; and type openness, where the capabil-ities and behaviors of agents change over time. This report provides a conceptual and empirical review, focusing on the interplay between openness and the credit assignment problem (CAP). CAP involves determining the contribution of individual agents to the overall system performance, a task that becomes increasingly complex in open environ-ments. Traditional credit assignment (CA) methods often assume static agent populations, fixed and pre-defined tasks, and stationary types, making them inadequate for open systems. We first conduct a conceptual analysis, in-troducing new sub-categories of openness to detail how events like agent turnover or task cancellation break the assumptions of environmental stationarity and fixed team composition that underpin existing CAP methods. We then present an empirical study using representative temporal and structural algorithms in an open environment. The results demonstrate that openness directly causes credit misattribution, evidenced by unstable loss functions and significant performance degradation.
VessShape: Few-shot 2D blood vessel segmentation by leveraging shape priors from synthetic images
Comin, Cesar H., Galvão, Wesley N.
Semantic segmentation of blood vessels is an important task in medical image analysis, but its progress is often hindered by the scarcity of large annotated datasets and the poor generalization of models across different imaging modalities. A key aspect is the tendency of Convolutional Neural Networks (CNNs) to learn texture-based features, which limits their performance when applied to new domains with different visual characteristics. We hypothesize that leveraging geometric priors of vessel shapes, such as their tubular and branching nature, can lead to more robust and data-efficient models. To investigate this, we introduce VessShape, a methodology for generating large-scale 2D synthetic datasets designed to instill a shape bias in segmentation models. VessShape images contain procedurally generated tubular geometries combined with a wide variety of foreground and background textures, encouraging models to learn shape cues rather than textures. We demonstrate that a model pre-trained on VessShape images achieves strong few-shot segmentation performance on two real-world datasets from different domains, requiring only four to ten samples for fine-tuning. Furthermore, the model exhibits notable zero-shot capabilities, effectively segmenting vessels in unseen domains without any target-specific training. Our results indicate that pre-training with a strong shape bias can be an effective strategy to overcome data scarcity and improve model generalization in blood vessel segmentation.
Enhancing software product lines with machine learning components
Cobaleda, Luz-Viviana, Carvajal, Julián, Vallejo, Paola, López, Andrés, Mazo, Raúl
Modern software systems increasingly integrate machine learning (ML) due to its advancements and ability to enhance data-driven decision-making. However, this integration introduces significant challenges for software engineering, especially in software product lines (SPLs), where managing variability and reuse becomes more complex with the inclusion of ML components. Although existing approaches have addressed variability management in SPLs and the integration of ML components in isolated systems, few have explored the intersection of both domains. Specifically, there is limited support for modeling and managing variability in SPLs that incorporate ML components. To bridge this gap, this article proposes a structured framework designed to extend Software Product Line engineering, facilitating the integration of ML components. It facilitates the design of SPLs with ML capabilities by enabling systematic modeling of variability and reuse. The proposal has been partially implemented with the VariaMos tool.