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Delta-learned force fields for nonbonded interactions: Addressing the strength mismatch between covalent-nonbonded interaction for global models
Cázares-Trejo, Leonardo, Loreto-Silva, Marco, Sauceda, Huziel E.
Noncovalent interactions--vdW dispersion, hydrogen/halogen bonding, ion-$π$, and $π$-stacking--govern structure, dynamics, and emergent phenomena in materials and molecular systems, yet accurately learning them alongside covalent forces remains a core challenge for machine-learned force fields (MLFFs). This challenge is acute for global models that use Coulomb-matrix (CM) descriptors compared under Euclidean/Frobenius metrics in multifragment settings. We show that the mismatch between predominantly covalent force labels and the CM's overrepresentation of intermolecular features biases single-model training and degrades force-field fidelity. To address this, we introduce \textit{$Δ$-sGDML}, a scale-aware formulation within the sGDML framework that explicitly decouples intra- and intermolecular physics by training fragment-specific models alongside a dedicated binding model, then composing them at inference. Across benzene dimers, host-guest complexes (C$_{60}$@buckycatcher, NO$_3^-$@i-corona[6]arene), benzene-water, and benzene-Na$^+$, \mbox{$Δ$-sGDML} delivers consistent gains over a single global model, with fragment-resolved force-error reductions up to \textbf{75\%}, without loss of energy accuracy. Furthermore, molecular-dynamics simulations further confirm that the $Δ$-model yields a reliable force field for C$_{60}$@buckycatcher, producing stable trajectories across a wide range of temperatures (10-400~K), unlike the single global model, which loses stability above $\sim$200~K. The method offers a practical route to homogenize per-fragment errors and recover reliable noncovalent physics in global MLFFs.
Variational Geometry-aware Neural Network based Method for Solving High-dimensional Diffeomorphic Mapping Problems
Li, Zhiwen, Ho, Cheuk Hin, Lui, Lok Ming
Traditional methods for high-dimensional diffeomorphic mapping often struggle with the curse of dimensionality. We propose a mesh-free learning framework designed for $n$-dimensional mapping problems, seamlessly combining variational principles with quasi-conformal theory. Our approach ensures accurate, bijective mappings by regulating conformality distortion and volume distortion, enabling robust control over deformation quality. The framework is inherently compatible with gradient-based optimization and neural network architectures, making it highly flexible and scalable to higher-dimensional settings. Numerical experiments on both synthetic and real-world medical image data validate the accuracy, robustness, and effectiveness of the proposed method in complex registration scenarios.
Between Myths and Metaphors: Rethinking LLMs for SRH in Conservative Contexts
Humayun, Ameemah, Zubair, Bushra, Mustafa, Maryam
Low-resource countries represent over 90% of maternal deaths, with Pakistan among the top four countries contributing nearly half in 2023. Since these deaths are mostly preventable, large language models (LLMs) can help address this crisis by automating health communication and risk assessment. However, sexual and reproductive health (SRH) communication in conservative contexts often relies on indirect language that obscures meaning, complicating LLM-based interventions. We conduct a two-stage study in Pakistan: (1) analyzing data from clinical observations, interviews, and focus groups with clinicians and patients, and (2) evaluating the interpretive capabilities of five popular LLMs on this data. Our analysis identifies two axes of communication (referential domain and expression approach) and shows LLMs struggle with semantic drift, myths, and polysemy in clinical interactions. We contribute: (1) empirical themes in SRH communication, (2) a categorization framework for indirect communication, (3) evaluation of LLM performance, and (4) design recommendations for culturally-situated SRH communication.
Thinking Like a Student: AI-Supported Reflective Planning in a Theory-Intensive Computer Science Course
In the aftermath of COVID-19, many universities implemented supplementary "reinforcement" roles to support students in demanding courses. Although the name for such roles may differ between institutions, the underlying idea of providing structured supplementary support is common. However, these roles were often poorly defined, lacking structured materials, pedagogical oversight, and integration with the core teaching team. This paper reports on the redesign of reinforcement sessions in a challenging undergraduate course on formal methods and computational models, using a large language model (LLM) as a reflective planning tool. The LLM was prompted to simulate the perspective of a second-year student, enabling the identification of conceptual bottlenecks, gaps in intuition, and likely reasoning breakdowns before classroom delivery. These insights informed a structured, repeatable session format combining targeted review, collaborative examples, independent student work, and guided walkthroughs. Conducted over a single semester, the intervention received positive student feedback, indicating increased confidence, reduced anxiety, and improved clarity, particularly in abstract topics such as the pumping lemma and formal language expressive power comparisons. The findings suggest that reflective, instructor-facing use of LLMs can enhance pedagogical design in theoretically dense domains and may be adaptable to other cognitively demanding computer science courses.
The Eigenvalues Entropy as a Classifier Evaluation Measure
Classification is a machine learning method used in many practical applications: text mining, handwritten character recognition, face recognition, pattern classification, scene labeling, computer vision, natural langage processing. A classifier prediction results and training set information are often used to get a contingency table which is used to quantify the method quality through an evaluation measure. Such measure, typically a numerical value, allows to choose a suitable method among several. Many evaluation measures available in the literature are less accurate for a dataset with imbalanced classes. In this paper, the eigenvalues entropy is used as an evaluation measure for a binary or a multi-class problem. For a binary problem, relations are given between the eigenvalues and some commonly used measures, the sensitivity, the specificity, the area under the operating receiver characteristic curve and the Gini index. A by-product result of this paper is an estimate of the confusion matrix to deal with the curse of the imbalanced classes. Various data examples are used to show the better performance of the proposed evaluation measure over the gold standard measures available in the literature.
Before the Clinic: Transparent and Operable Design Principles for Healthcare AI
Bakumenko, Alexander, Masino, Aaron J., Hoelscher, Janine
The translation of artificial intelligence (AI) systems into clinical practice requires bridging fundamental gaps between explainable AI theory, clinician expectations, and governance requirements. While conceptual frameworks define what constitutes explainable AI (XAI) and qualitative studies identify clinician needs, little practical guidance exists for development teams to prepare AI systems prior to clinical evaluation. We propose two foundational design principles, Transparent Design and Operable Design, that operationalize pre-clinical technical requirements for healthcare AI. Transparent Design encompasses interpretability and understandability artifacts that enable case-level reasoning and system traceability. Operable Design encompasses calibration, uncertainty, and robustness to ensure reliable, predictable system behavior under real-world conditions. We ground these principles in established XAI frameworks, map them to documented clinician needs, and demonstrate their alignment with emerging governance requirements. This pre-clinical playbook provides actionable guidance for development teams, accelerates the path to clinical evaluation, and establishes a shared vocabulary bridging AI researchers, healthcare practitioners, and regulatory stakeholders. By explicitly scoping what can be built and verified before clinical deployment, we aim to reduce friction in clinical AI translation while remaining cautious about what constitutes validated, deployed explainability.
LGCC: Enhancing Flow Matching Based Text-Guided Image Editing with Local Gaussian Coupling and Context Consistency
Liu, Fangbing, Duan, Pengfei, Li, Wen, He, Yi
Recent advancements have demonstrated the great potential of flow matching-based Multimodal Large Language Models (MLLMs) in image editing. However, state-of-the-art works like BAGEL face limitations, including detail degradation, content inconsistency, and inefficiency due to their reliance on random noise initialization. To address these issues, we propose LGCC, a novel framework with two key components: Local Gaussian Noise Coupling (LGNC) and Content Consistency Loss (CCL). LGNC preserves spatial details by modeling target image embeddings and their locally perturbed counterparts as coupled pairs, while CCL ensures semantic alignment between edit instructions and image modifications, preventing unintended content removal. By integrating LGCC with the BAGEL pre-trained model via curriculum learning, we significantly reduce inference steps, improving local detail scores on I2EBench by 1.60% and overall scores by 0.53%. LGCC achieves 3x -- 5x speedup for lightweight editing and 2x for universal editing, requiring only 40% -- 50% of the inference time of BAGEL or Flux. These results demonstrate LGCC's ability to preserve detail, maintain contextual integrity, and enhance inference speed, offering a cost-efficient solution without compromising editing quality.
Retrieval-Augmented Multimodal Depression Detection
Hou, Ruibo, Teng, Shiyu, Liu, Jiaqing, Chai, Shurong, Li, Yinhao, Lin, Lanfen, Chen, Yen-Wei
Multimodal deep learning has shown promise in depression detection by integrating text, audio, and video signals. Recent work leverages sentiment analysis to enhance emotional understanding, yet suffers from high computational cost, domain mismatch, and static knowledge limitations. To address these issues, we propose a novel Retrieval-Augmented Generation (RAG) framework. Given a depression-related text, our method retrieves semantically relevant emotional content from a sentiment dataset and uses a Large Language Model (LLM) to generate an Emotion Prompt as an auxiliary modality. This prompt enriches emotional representation and improves interpretability. Experiments on the AVEC 2019 dataset show our approach achieves state-of-the-art performance with CCC of 0.593 and MAE of 3.95, surpassing previous transfer learning and multi-task learning baselines.
Effectiveness of High-Dimensional Distance Metrics on Solar Flare Time Series
Rohlfing, Elaina, Ahmadzadeh, Azim, Aparna, V
Solar-flare forecasting has been extensively researched yet remains an open problem. In this paper, we investigate the contributions of elastic distance measures for detecting patterns in the solar-flare dataset, SWAN-SF. We employ a simple $k$-medoids clustering algorithm to evaluate the effectiveness of advanced, high-dimensional distance metrics. Our results show that, despite thorough optimization, none of the elastic distances outperform Euclidean distance by a significant margin. We demonstrate that, although elastic measures have shown promise for univariate time series, when applied to the multivariate time series of SWAN-SF, characterized by the high stochasticity of solar activity, they effectively collapse to Euclidean distance. We conduct thousands of experiments and present both quantitative and qualitative evidence supporting this finding.
CytoNet: A Foundation Model for the Human Cerebral Cortex
Schiffer, Christian, Boztoprak, Zeynep, Kropp, Jan-Oliver, Thönnißen, Julia, Berr, Katia, Spitzer, Hannah, Amunts, Katrin, Dickscheid, Timo
To study how the human brain works, we need to explore the organization of the cerebral cortex and its detailed cellular architecture. We introduce CytoNet, a foundation model that encodes high-resolution microscopic image patches of the cerebral cortex into highly expressive feature representations, enabling comprehensive brain analyses. CytoNet employs self-supervised learning using spatial proximity as a powerful training signal, without requiring manual labelling. The resulting features are anatomically sound and biologically relevant. They encode general aspects of cortical architecture and unique brain-specific traits. We demonstrate top-tier performance in tasks such as cortical area classification, cortical layer segmentation, cell morphology estimation, and unsupervised brain region mapping. As a foundation model, CytoNet offers a consistent framework for studying cortical microarchitecture, supporting analyses of its relationship with other structural and functional brain features, and paving the way for diverse neuroscientific investigations.