Radiologists compose diagnostic reports through a structured workflow: they describe visual findings, summarize them into impressions, and carefully refine statements in clinically critical cases. However, most existing medical report generation (MRG) systems treat reports as flat sequences, overlooking this hierarchical organization and leading to inconsistencies between descriptive and diagnostic content. To align model behavior with real-world reporting practices, we propose RadFlow, a hierarchical workflow-guided reinforcement optimization framework that explicitly models the structured nature of clinical reporting. RadFlow introduces a clinically grounded reward hierarchy that mirrors the organization of radiological reports. At the global level, the reward integrates linguistic fluency, medical-domain correctness, and cross-sectional consistency between Finding and Impression, promoting coherent and clinically faithful narratives. At the local level, a section-specific reward emphasizes Impression quality, reflecting its central role in diagnostic accuracy. Furthermore, a critical-aware policy optimization mechanism adaptively regularizes learning for high-risk or clinically sensitive cases, emulating the cautious refinement behavior of radiologists when documenting critical findings. Together, these components translate the structured reporting paradigm into the reinforcement fine-tuning process, enabling the model to generate reports that are both linguistically consistent and clinically aligned. Experiments on chest X-ray and carotid ultrasound datasets demonstrate that RadFlow consistently improves diagnostic coherence and overall report quality compared with state-of-the-art baselines.

Protein structure tokenization converts 3D structures into discrete or vectorized representations, enabling the integration of structural and sequence data. Despite many recent works on structure tokenization, the properties of the underlying discrete representations are not well understood. In this work, we first demonstrate that the successful utilization of structural tokens in a language model for structure prediction depends on using rich, pre-trained sequence embeddings to bridge the semantic gap between the sequence and structural "language". The analysis of the structural vocabulary itself then reveals significant semantic redundancy, where multiple distinct tokens correspond to nearly identical local geometries, acting as "structural synonyms". This redundancy, rather than being a flaw, can be exploited with a simple "synonym swap" strategy to generate diverse conformational ensembles by perturbing a predicted structure with its structural synonyms. This computationally lightweight method accurately recapitulates protein flexibility, performing competitively with state-of-the-art models. Our study provides fundamental insights into the nature of discrete protein structure representations and introduces a powerful, near-instantaneous method for modeling protein dynamics. Source code is available in https://github.com/IDEA-XL/TokenMD.

Alignment methods in moral domains seek to elicit moral preferences of human stakeholders and incorporate them into AI. This presupposes moral preferences as static targets, but such preferences often evolve over time. Proper alignment of AI to dynamic human preferences should ideally account for "legitimate" changes to moral reasoning, while ignoring changes related to attention deficits, cognitive biases, or other arbitrary factors. However, common AI alignment approaches largely neglect temporal changes in preferences, posing serious challenges to proper alignment, especially in high-stakes applications of AI, e.g., in healthcare domains, where misalignment can jeopardize the trustworthiness of the system and yield serious individual and societal harms. This work investigates the extent to which people's moral preferences change over time, and the impact of such changes on AI alignment. Our study is grounded in the kidney allocation domain, where we elicit responses to pairwise comparisons of hypothetical kidney transplant patients from over 400 participants across 3-5 sessions. We find that, on average, participants change their response to the same scenario presented at different times around 6-20% of the time (exhibiting "response instability"). Additionally, we observe significant shifts in several participants' retrofitted decision-making models over time (capturing "model instability"). The predictive performance of simple AI models decreases as a function of both response and model instability. Moreover, predictive performance diminishes over time, highlighting the importance of accounting for temporal changes in preferences during training. These findings raise fundamental normative and technical challenges relevant to AI alignment, highlighting the need to better understand the object of alignment (what to align to) when user preferences change significantly over time.

Inferring causal relationships from observed data is an important task, yet it becomes challenging when the data is subject to various external interferences. Most of these interferences are the additional effects of external factors on observed variables. Since these external factors are often unknown, we introduce latent variables to represent these unobserved factors that affect the observed data. Specifically, to capture the causal strength and adjacency information, we propose a new temporal latent variable structural causal model, incorporating causal strength and adjacency coefficients that represent the causal relationships between variables. Considering that expert knowledge can provide information about unknown interferences in certain scenarios, we develop a method that facilitates the incorporation of prior knowledge into parameter learning based on Variational Inference, to guide the model estimation. Experimental results demonstrate the stability and accuracy of our proposed method.

Neural operators have emerged as a promising paradigm for learning solution operators of partial differential equa- tions (PDEs) directly from data. Existing methods, such as those based on Fourier or graph techniques, make strong as- sumptions about the structure of the kernel integral opera- tor, assumptions which may limit expressivity. We present SVD-NO, a neural operator that explicitly parameterizes the kernel by its singular-value decomposition (SVD) and then carries out the integral directly in the low-rank basis. Two lightweight networks learn the left and right singular func- tions, a diagonal parameter matrix learns the singular values, and a Gram-matrix regularizer enforces orthonormality. As SVD-NO approximates the full kernel, it obtains a high de- gree of expressivity. Furthermore, due to its low-rank struc- ture the computational complexity of applying the operator remains reasonable, leading to a practical system. In exten- sive evaluations on five diverse benchmark equations, SVD- NO achieves a new state of the art. In particular, SVD-NO provides greater performance gains on PDEs whose solutions are highly spatially variable. The code of this work is publicly available at https://github.com/2noamk/SVDNO.git.

This paper encompasses an in-depth examination of Retinopathy of Prematurity (ROP) diagnosis, employing advanced deep learning methodologies. Our focus centers on refining and evaluating CNN-based approaches for precise and efficient ROP detection. We navigate the complexities of dataset curation, preprocessing strategies, and model architecture, aligning with research objectives encompassing model effectiveness, computational cost analysis, and time complexity assessment. Results underscore the supremacy of tailored CNN models over pre-trained counterparts, evident in heightened accuracy and F1-scores. Implementation of a voting system further enhances performance. Additionally, our study reveals the potential of the proposed customized CNN model to alleviate computational burdens associated with deep neural networks. Furthermore, we showcase the feasibility of deploying these models within dedicated software and hardware configurations, highlighting their utility as valuable diagnostic aids in clinical settings. In summary, our discourse significantly contributes to ROP diagnosis, unveiling the efficacy of deep learning models in enhancing diagnostic precision and efficiency.

Classical approaches often treat interaction as engineered product terms or as emergent patterns in flexible models, offering little control over how synergy or antagonism arises. We take a quantum-inspired view: following the Born rule (probability as squared amplitude), \emph{coherent} aggregation sums complex amplitudes before squaring, creating an interference cross-term, whereas an \emph{incoherent} proxy sums squared magnitudes and removes it. In a minimal linear-amplitude model, this cross-term equals the standard potential-outcome interaction contrast \(Δ_{\mathrm{INT}}\) in a \(2\times 2\) factorial design, giving relative phase a direct, mechanism-level control over synergy versus antagonism. We instantiate this idea in a lightweight \emph{Interference Kernel Classifier} (IKC) and introduce two diagnostics: \emph{Coherent Gain} (log-likelihood gain of coherent over the incoherent proxy) and \emph{Interference Information} (the induced Kullback-Leibler gap). A controlled phase sweep recovers the identity. On a high-interaction synthetic task (XOR), IKC outperforms strong baselines under paired, budget-matched comparisons; on real tabular data (\emph{Adult} and \emph{Bank Marketing}) it is competitive overall but typically trails the most capacity-rich baseline in paired differences. Holding learned parameters fixed, toggling aggregation from incoherent to coherent consistently improves negative log-likelihood, Brier score, and expected calibration error, with positive Coherent Gain on both datasets.

Large language models (LLMs) are rapidly transforming various domains, including biomedicine and healthcare, and demonstrate remarkable potential from scientific research to new drug discovery. Graph-based retrieval-augmented generation (RAG) systems, as a useful application of LLMs, can improve contextual reasoning through structured entity and relationship identification from long-context knowledge, e.g. biomedical literature. Even though many advantages over naive RAGs, most of graph-based RAGs are computationally intensive, which limits their application to large-scale dataset. To address this issue, we introduce fastbmRAG, an fast graph-based RAG optimized for biomedical literature. Utilizing well organized structure of biomedical papers, fastbmRAG divides the construction of knowledge graph into two stages, first drafting graphs using abstracts; and second, refining them using main texts guided by vector-based entity linking, which minimizes redundancy and computational load. Our evaluations demonstrate that fastbmRAG is over 10x faster than existing graph-RAG tools and achieve superior coverage and accuracy to input knowledge. FastbmRAG provides a fast solution for quickly understanding, summarizing, and answering questions about biomedical literature on a large scale. FastbmRAG is public available in https://github.com/menggf/fastbmRAG.

The remarkable progress in Artificial Intelligence (AI) is foundation-ally linked to a concurrent revolution in computer architecture. As AI models, particularly Deep Neural Networks (DNNs), have grown in complexity, their massive computational demands have pushed traditional architectures to their limits. This paper provides a structured review of this co-evolution, analyzing the architectural landscape designed to accelerate modern AI workloads. We explore the dominant architectural paradigms Graphics Processing Units (GPUs), Appli-cation-Specific Integrated Circuits (ASICs), and Field-Programmable Gate Ar-rays (FPGAs) by breaking down their design philosophies, key features, and per-formance trade-offs. The core principles essential for performance and energy efficiency, including dataflow optimization, advanced memory hierarchies, spar-sity, and quantization, are analyzed. Furthermore, this paper looks ahead to emerging technologies such as Processing-in-Memory (PIM) and neuromorphic computing, which may redefine future computation. By synthesizing architec-tural principles with quantitative performance data from industry-standard benchmarks, this survey presents a comprehensive picture of the AI accelerator landscape. We conclude that AI and computer architecture are in a symbiotic relationship, where hardware-software co-design is no longer an optimization but a necessity for future progress in computing.

BERTScore has become a widely adopted metric for evaluating semantic similarity between natural language sentences. However, we identify a critical limitation: BERTScore exhibits low sensitivity to numerical variation, a significant weakness in finance where numerical precision directly affects meaning (e.g., distinguishing a 2% gain from a 20% loss). We introduce FinNuE, a diagnostic dataset constructed with controlled numerical perturbations across earnings calls, regulatory filings, social media, and news articles. Using FinNuE, demonstrate that BERTScore fails to distinguish semantically critical numerical differences, often assigning high similarity scores to financially divergent text pairs. Our findings reveal fundamental limitations of embedding-based metrics for finance and motivate numerically-aware evaluation frameworks for financial NLP.