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Multi-objective Molecular Optimization for Opioid Use Disorder Treatment Using Generative Network Complex

arXiv.org Artificial Intelligence

Opioid Use Disorder (OUD) has emerged as a significant global public health issue, with complex multifaceted conditions. Due to the lack of effective treatment options for various conditions, there is a pressing need for the discovery of new medications. In this study, we propose a deep generative model that combines a stochastic differential equation (SDE)-based diffusion modeling with the latent space of a pretrained autoencoder model. The molecular generator enables efficient generation of molecules that are effective on multiple targets, specifically the mu, kappa, and delta opioid receptors. Furthermore, we assess the ADMET (absorption, distribution, metabolism, excretion, and toxicity) properties of the generated molecules to identify drug-like compounds. To enhance the pharmacokinetic properties of some lead compounds, we employ a molecular optimization approach. We obtain a diverse set of drug-like molecules. We construct binding affinity predictors by integrating molecular fingerprints derived from autoencoder embeddings, transformer embeddings, and topological Laplacians with advanced machine learning algorithms. Further experimental studies are needed to evaluate the pharmacological effects of these drug-like compounds for OUD treatment. Our machine learning platform serves as a valuable tool in designing and optimizing effective molecules for addressing OUD.


Accurate Measures of Vaccination and Concerns of Vaccine Holdouts from Web Search Logs

arXiv.org Artificial Intelligence

To design effective vaccine policies, policymakers need detailed data about who has been vaccinated, who is holding out, and why. However, existing data in the US are insufficient: reported vaccination rates are often delayed or missing, and surveys of vaccine hesitancy are limited by high-level questions and self-report biases. Here, we show how large-scale search engine logs and machine learning can be leveraged to fill these gaps and provide novel insights about vaccine intentions and behaviors. First, we develop a vaccine intent classifier that can accurately detect when a user is seeking the COVID-19 vaccine on search. Our classifier demonstrates strong agreement with CDC vaccination rates, with correlations above 0.86, and estimates vaccine intent rates to the level of ZIP codes in real time, allowing us to pinpoint more granular trends in vaccine seeking across regions, demographics, and time. To investigate vaccine hesitancy, we use our classifier to identify two groups, vaccine early adopters and vaccine holdouts. We find that holdouts, compared to early adopters matched on covariates, are 69% more likely to click on untrusted news sites. Furthermore, we organize 25,000 vaccine-related URLs into a hierarchical ontology of vaccine concerns, and we find that holdouts are far more concerned about vaccine requirements, vaccine development and approval, and vaccine myths, and even within holdouts, concerns vary significantly across demographic groups. Finally, we explore the temporal dynamics of vaccine concerns and vaccine seeking, and find that key indicators emerge when individuals convert from holding out to preparing to accept the vaccine.


Towards Fair and Explainable AI using a Human-Centered AI Approach

arXiv.org Artificial Intelligence

The rise of machine learning (ML) is accompanied by several high-profile cases that have stressed the need for fairness, accountability, explainability and trust in ML systems. The existing literature has largely focused on fully automated ML approaches that try to optimize for some performance metric. However, human-centric measures like fairness, trust, explainability, etc. are subjective in nature, context-dependent, and might not correlate with conventional performance metrics. To deal with these challenges, we explore a human-centered AI approach that empowers people by providing more transparency and human control. In this dissertation, we present 5 research projects that aim to enhance explainability and fairness in classification systems and word embeddings. The first project explores the utility/downsides of introducing local model explanations as interfaces for machine teachers (crowd workers). Our study found that adding explanations supports trust calibration for the resulting ML model and enables rich forms of teaching feedback. The second project presents D-BIAS, a causality-based human-in-the-loop visual tool for identifying and mitigating social biases in tabular datasets. Apart from fairness, we found that our tool also enhances trust and accountability. The third project presents WordBias, a visual interactive tool that helps audit pre-trained static word embeddings for biases against groups, such as females, or subgroups, such as Black Muslim females. The fourth project presents DramatVis Personae, a visual analytics tool that helps identify social biases in creative writing. Finally, the last project presents an empirical study aimed at understanding the cumulative impact of multiple fairness-enhancing interventions at different stages of the ML pipeline on fairness, utility and different population groups. We conclude by discussing some of the future directions.


Adversarial Attacks on the Interpretation of Neuron Activation Maximization

arXiv.org Artificial Intelligence

The internal functional behavior of trained Deep Neural Networks is notoriously difficult to interpret. Activation-maximization approaches are one set of techniques used to interpret and analyze trained deep-learning models. These consist in finding inputs that maximally activate a given neuron or feature map. These inputs can be selected from a data set or obtained by optimization. However, interpretability methods may be subject to being deceived. In this work, we consider the concept of an adversary manipulating a model for the purpose of deceiving the interpretation. We propose an optimization framework for performing this manipulation and demonstrate a number of ways that popular activation-maximization interpretation techniques associated with CNNs can be manipulated to change the interpretations, shedding light on the reliability of these methods.


Learning to Mask and Permute Visual Tokens for Vision Transformer Pre-Training

arXiv.org Artificial Intelligence

The use of self-supervised pre-training has emerged as a promising approach to enhance the performance of visual tasks such as image classification. In this context, recent approaches have employed the Masked Image Modeling paradigm, which pre-trains a backbone by reconstructing visual tokens associated with randomly masked image patches. This masking approach, however, introduces noise into the input data during pre-training, leading to discrepancies that can impair performance during the fine-tuning phase. Furthermore, input masking neglects the dependencies between corrupted patches, increasing the inconsistencies observed in downstream fine-tuning tasks. To overcome these issues, we propose a new self-supervised pre-training approach, named Masked and Permuted Vision Transformer (MaPeT), that employs autoregressive and permuted predictions to capture intra-patch dependencies. In addition, MaPeT employs auxiliary positional information to reduce the disparity between the pre-training and fine-tuning phases. In our experiments, we employ a fair setting to ensure reliable and meaningful comparisons and conduct investigations on multiple visual tokenizers, including our proposed $k$-CLIP which directly employs discretized CLIP features. Our results demonstrate that MaPeT achieves competitive performance on ImageNet, compared to baselines and competitors under the same model setting. Source code and trained models are publicly available at: https://github.com/aimagelab/MaPeT.


Kalman Filter Auto-tuning through Enforcing Chi-Squared Normalized Error Distributions with Bayesian Optimization

arXiv.org Artificial Intelligence

The nonlinear and stochastic relationship between noise covariance parameter values and state estimator performance makes optimal filter tuning a very challenging problem. Popular optimization-based tuning approaches can easily get trapped in local minima, leading to poor noise parameter identification and suboptimal state estimation. Recently, black box techniques based on Bayesian optimization with Gaussian processes (GPBO) have been shown to overcome many of these issues, using normalized estimation error squared (NEES) and normalized innovation error (NIS) statistics to derive cost functions for Kalman filter auto-tuning. While reliable noise parameter estimates are obtained in many cases, GPBO solutions obtained with these conventional cost functions do not always converge to optimal filter noise parameters and lack robustness to parameter ambiguities in time-discretized system models. This paper addresses these issues by making two main contributions. First, we show that NIS and NEES errors are only chi-squared distributed for tuned estimators. As a result, chi-square tests are not sufficient to ensure that an estimator has been correctly tuned. We use this to extend the familiar consistency tests for NIS and NEES to penalize if the distribution is not chi-squared distributed. Second, this cost measure is applied within a Student-t processes Bayesian Optimization (TPBO) to achieve robust estimator performance for time discretized state space models. The robustness, accuracy, and reliability of our approach are illustrated on classical state estimation problems.


RECAP: Retrieval-Enhanced Context-Aware Prefix Encoder for Personalized Dialogue Response Generation

arXiv.org Artificial Intelligence

Endowing chatbots with a consistent persona is essential to an engaging conversation, yet it remains an unresolved challenge. In this work, we propose a new retrieval-enhanced approach for personalized response generation. Specifically, we design a hierarchical transformer retriever trained on dialogue domain data to perform personalized retrieval and a context-aware prefix encoder that fuses the retrieved information to the decoder more effectively. Extensive experiments on a real-world dataset demonstrate the effectiveness of our model at generating more fluent and personalized responses. We quantitatively evaluate our model's performance under a suite of human and automatic metrics and find it to be superior compared to state-of-the-art baselines on English Reddit conversations.


Evolving Testing Scenario Generation Method and Intelligence Evaluation Framework for Automated Vehicles

arXiv.org Artificial Intelligence

Interaction between the background vehicles (BVs) and automated vehicles (AVs) in scenario-based testing plays a critical role in evaluating the intelligence of the AVs. Current testing scenarios typically employ predefined or scripted BVs, which inadequately reflect the complexity of human-like social behaviors in real-world driving scenarios, and also lack a systematic metric for evaluating the comprehensive intelligence of AVs. Therefore, this paper proposes an evolving scenario generation method that utilizes deep reinforcement learning (DRL) to create human-like BVs for testing and intelligence evaluation of AVs. Firstly, a class of driver models with human-like competitive, cooperative, and mutual driving motivations is designed. Then, utilizing an improved "level-k" training procedure, the three distinct driver models acquire game-based interactive driving policies. And these models are assigned to BVs for generating evolving scenarios in which all BVs can interact continuously and evolve diverse contents. Next, a framework including safety, driving efficiency, and interaction utility are presented to evaluate and quantify the intelligence performance of 3 systems under test (SUTs), indicating the effectiveness of the evolving scenario for intelligence testing. Finally, the complexity and fidelity of the proposed evolving testing scenario are validated. The results demonstrate that the proposed evolving scenario exhibits the highest level of complexity compared to other baseline scenarios and has more than 85% similarity to naturalistic driving data. This highlights the potential of the proposed method to facilitate the development and evaluation of high-level AVs in a realistic and challenging environment.


Large Language Models as Tax Attorneys: A Case Study in Legal Capabilities Emergence

arXiv.org Artificial Intelligence

Better understanding of Large Language Models' (LLMs) legal analysis abilities can contribute to improving the efficiency of legal services, governing artificial intelligence, and leveraging LLMs to identify inconsistencies in law. This paper explores LLM capabilities in applying tax law. We choose this area of law because it has a structure that allows us to set up automated validation pipelines across thousands of examples, requires logical reasoning and maths skills, and enables us to test LLM capabilities in a manner relevant to real-world economic lives of citizens and companies. Our experiments demonstrate emerging legal understanding capabilities, with improved performance in each subsequent OpenAI model release. We experiment with retrieving and utilising the relevant legal authority to assess the impact of providing additional legal context to LLMs. Few-shot prompting, presenting examples of question-answer pairs, is also found to significantly enhance the performance of the most advanced model, GPT-4. The findings indicate that LLMs, particularly when combined with prompting enhancements and the correct legal texts, can perform at high levels of accuracy but not yet at expert tax lawyer levels. As LLMs continue to advance, their ability to reason about law autonomously could have significant implications for the legal profession and AI governance.


Saltation Matrices: The Essential Tool for Linearizing Hybrid Dynamical Systems

arXiv.org Artificial Intelligence

I Figure 1: An example 2 mode hybrid system where the domains are shown in black circles D, the dynamics are shown with gray arrows F, the guard for the current domain is shown in red dashed g, and the reset from the current mode to the next mode is shown in blue R. The saltation matrix relies on differentiating the guards B. Saltation matrix derivation and resets so they must be differentiable. Excluding Zeno In this section, the derivation of the saltation matrix (2) is conditions ensures we avoid computing infinite saltation matrices presented, following the geometric derivation from [10] with in finite time, which would clearly be unsound for the addition of reset maps. There are many alternate ways analysis. Transversality ensures that neighboring trajectories to derive (2): a derivation using the chain rule is included in impact the same guard unless the impact point lies on any Appendix A and a derivation using a double limit can be found other guard surface, in which case the Bouligand derivative in [96]. is the appropriate analysis tool [52, 114-117]. Transversality Suppose the nominal trajectory of interest is x(t) as shown also ensures the denominator in (2) does not approach zero. in Figure 1. The trajectory starts in mode I and goes through a In some cases, the saltation matrix for a hybrid transition hybrid transition to mode J at time t. The saltation matrix is a can become an identity transformation.