Life sciences research increasingly requires identifying, accessing, and effectively processing data from an ever-evolving array of information sources on the Linked Open Data (LOD) network. This dynamic landscape places a significant burden on researchers, as the quality of query responses depends heavily on the selection and semantic integration of data sources --processes that are often labor-intensive, error-prone, and costly. While the adoption of FAIR (Findable, Accessible, Interoperable, and Reusable) data principles has aimed to address these challenges, barriers to efficient and accurate scientific data processing persist. In this paper, we introduce FAIRBridge, an experimental natural language-based query processing system designed to empower scientists to discover, access, and query biological databases, even when they are not FAIR-compliant. FAIRBridge harnesses the capabilities of AI to interpret query intents, map them to relevant databases described in scientific literature, and generate executable queries via intelligent resource access plans. The system also includes robust tools for mitigating low-quality query processing, ensuring high fidelity and responsiveness in the information delivered. FAIRBridge's autonomous query processing framework enables users to explore alternative data sources, make informed choices at every step, and leverage community-driven crowd curation when needed. By providing a user-friendly, automated hypothesis-testing platform in natural English, FAIRBridge significantly enhances the integration and processing of scientific data, offering researchers a powerful new tool for advancing their inquiries.

We propose a novel prompt design paradigm that challenges conventional wisdom in large language model (LLM) prompting. While conventional wisdom prioritizes well-crafted instructions and demonstrations for in-context learning (ICL), we show that pruning random demonstrations into seemingly incoherent "gibberish" can remarkably improve performance across diverse tasks. Notably, the "gibberish" always matches or surpasses state-of-the-art automatic prompt optimization techniques, achieving substantial gains regardless of LLM alignment. Nevertheless, discovering an effective pruning strategy is non-trivial, as existing attribution methods and prompt compression algorithms fail to deliver robust results, let alone human intuition. In terms of this, we propose a self-discover prompt optimization framework, PromptQuine, an evolutionary search framework that automatically searches for the pruning strategy by itself using only low-data regimes. Much like the emergent complexity in nature--such as symbiosis and self-organization--arising in response to resource constraints, our framework evolves and refines unconventional yet highly effective prompts by leveraging only the tokens present within the context. We demonstrate its effectiveness across classification, multi-choice question answering, generation and math reasoning tasks across LLMs, while achieving decent runtime efficiency. We hope our findings can guide mechanistic studies on in-context learning, and provide a call to action, to pave the way for more open-ended search algorithms for more effective LLM prompting.

Recently, large language models (LLMs) have demonstrated impressive results but still suffer from hallucinations. Model editing has been proposed to correct factual inaccuracies in LLMs. A challenging case is sequential model editing (SME), which aims to rectify errors continuously rather than treating them as a one-time task. During SME, the general capabilities of LLMs can be negatively affected due to the introduction of new parameters. In this paper, we propose a queue-based self-correction framework (QueueEDIT) that not only enhances SME performance by addressing long-sequence dependency but also mitigates the impact of parameter bias on the general capabilities of LLMs. Specifically, we first introduce a structural mapping editing loss to map the triplets to the knowledge-sensitive neurons within the Transformer layers of LLMs. We then store the located parameters for each piece of edited knowledge in a queue and dynamically align previously edited parameters. In each edit, we select queue parameters most relevant to the currently located parameters to determine whether previous knowledge needs realignment. Irrelevant parameters in the queue are frozen, and we update the parameters at the queue head to the LLM to ensure they do not harm general abilities. Experiments show that our framework significantly outperforms strong baselines across various SME settings and maintains competitiveness in single-turn editing. The resulting LLMs also preserve high capabilities in general NLP tasks throughout the SME process.

Capture-the-Flag (CTF) competitions are crucial for cybersecurity education and training. As large language models (LLMs) evolve, there is increasing interest in their ability to automate CTF challenge solving. For example, DARPA has organized the AIxCC competition since 2023 to advance AI-powered automated offense and defense. However, this demands a combination of multiple abilities, from knowledge to reasoning and further to actions. In this paper, we highlight the importance of technical knowledge in solving CTF problems and deliberately construct a focused benchmark, CTFKnow, with 3,992 questions to measure LLMs' performance in this core aspect. Our study offers a focused and innovative measurement of LLMs' capability in understanding CTF knowledge and applying it to solve CTF challenges. Our key findings reveal that while LLMs possess substantial technical knowledge, they falter in accurately applying this knowledge to specific scenarios and adapting their strategies based on feedback from the CTF environment. Based on insights derived from this measurement study, we propose CTFAgent, a novel LLM-driven framework for advancing CTF problem-solving. CTFAgent introduces two new modules: two-stage Retrieval Augmented Generation (RAG) and interactive Environmental Augmentation, which enhance LLMs' technical knowledge and vulnerability exploitation on CTF, respectively. Our experimental results show that, on two popular CTF datasets, CTFAgent both achieves over 80% performance improvement. Moreover, in the recent picoCTF2024 hosted by CMU, CTFAgent ranked in the top 23.6% of nearly 7,000 participating teams. This reflects the benefit of our measurement study and the potential of our framework in advancing LLMs' capabilities in CTF problem-solving.

The growing deployment of deep learning models in real-world environments has intensified the need for efficient inference under strict latency and resource constraints. To meet these demands, dynamic deep learning systems (DDLSs) have emerged, offering input-adaptive computation to optimize runtime efficiency. While these systems succeed in reducing cost, their dynamic nature introduces subtle and underexplored security risks. In particular, input-dependent execution pathways create opportunities for adversaries to degrade efficiency, resulting in excessive latency, energy usage, and potential denial-of-service in time-sensitive deployments. This work investigates the security implications of dynamic behaviors in DDLSs and reveals how current systems expose efficiency vulnerabilities exploitable by adversarial inputs. Through a survey of existing attack strategies, we identify gaps in the coverage of emerging model architectures and limitations in current defense mechanisms. Building on these insights, we propose to examine the feasibility of efficiency attacks on modern DDLSs and develop targeted defenses to preserve robustness under adversarial conditions.

Safe, reliable navigation in extreme, unfamiliar terrain is required for future robotic space exploration missions. Recent generative-AI methods learn semantically aware navigation policies from large, cross-embodiment datasets, but offer limited safety guarantees. Inspired by human cognitive science, we propose a risk-guided diffusion framework that fuses a fast, learned "System-1" with a slow, physics-based "System-2", sharing computation at both training and inference to couple adaptability with formal safety. Hardware experiments conducted at the NASA JPL's Mars-analog facility, Mars Yard, show that our approach reduces failure rates by up to $4\times$ while matching the goal-reaching performance of learning-based robotic models by leveraging inference-time compute without any additional training.

Active event perception, the ability to dynamically detect, track, and summarize events in real time, is essential for embodied intelligence in tasks such as human-AI collaboration, assistive robotics, and autonomous navigation. However, existing approaches often depend on predefined action spaces, annotated datasets, and extrinsic rewards, limiting their adaptability and scalability in dynamic, real-world scenarios. Inspired by cognitive theories of event perception and predictive coding, we propose EASE, a self-supervised framework that unifies spatiotemporal representation learning and embodied control through free energy minimization. EASE leverages prediction errors and entropy as intrinsic signals to segment events, summarize observations, and actively track salient actors, operating without explicit annotations or external rewards. By coupling a generative perception model with an action-driven control policy, EASE dynamically aligns predictions with observations, enabling emergent behaviors such as implicit memory, target continuity, and adaptability to novel environments. Extensive evaluations in simulation and real-world settings demonstrate EASE's ability to achieve privacy-preserving and scalable event perception, providing a robust foundation for embodied systems in unscripted, dynamic tasks.

Large language models (LLMs) have shown significant potential to change how we write, communicate, and create, leading to rapid adoption across society. This dissertation examines how individuals and institutions are adapting to and engaging with this emerging technology through three research directions. First, I demonstrate how the institutional adoption of AI detectors introduces systematic biases, particularly disadvantaging writers of non-dominant language varieties, highlighting critical equity concerns in AI governance. Second, I present novel population-level algorithmic approaches that measure the increasing adoption of LLMs across writing domains, revealing consistent patterns of AI-assisted content in academic peer reviews, scientific publications, consumer complaints, corporate communications, job postings, and international organization press releases. Finally, I investigate LLMs' capability to provide feedback on research manuscripts through a large-scale empirical analysis, offering insights into their potential to support researchers who face barriers in accessing timely manuscript feedback, particularly early-career researchers and those from under-resourced settings.

Executive Summary The UT-GraphCast Hindcast Dataset (1979-2024) is a comprehensive global weather forecast archive generated using the Google DeepMind GraphCast Operational model. Developed by researchers at The University of Texas at Austin and published under the WCRP umbrella, this dataset provides daily 15 day deterministic forecasts at 00 UTC on a 0.25 0.25 global grid ( 25 km) for a 45-year period. It predicts more than a dozen key atmospheric and surface variables on 37 vertical levels, delivering a full medium-range forecast in under one minute on modern hardware. This new hindcast archive enables retrospective studies of historical weather, climate variability, and extreme events with unprecedented spatial and temporal detail. Preliminary validation shows that GraphCast forecasts generally reproduce ERA5 conditions with high fidelity and skill comparable or superior to conventional numerical models up to 10-15 days. In particular, GraphCast is known to outperform the state-of-the-art ECMWF IFS High-Resolution model (HRES) [Lam et al., 2023] on most verification targets, and to predict severe events (e.g., tropical cyclones, atmospheric rivers, heatwaves) with excellent accuracy. These benchmarks suggest that the GraphCast hindcast will be a valuable tool for climate and weather research.

Due to the presence of political echo chambers, it becomes imperative to detect and remove subjective bias and emotionally charged language from both the text and images of political articles. However, prior work has focused on solely the text portion of the bias rather than both the text and image portions. This is a problem because the images are just as powerful of a medium to communicate information as text is. To that end, we present a model that leverages both text and image bias which consists of four different steps. Image Text Alignment focuses on semantically aligning images based on their bias through CLIP models. Image Bias Scoring determines the appropriate bias score of images via a ViT classifier. Text De-Biasing focuses on detecting biased words and phrases and neutralizing them through BERT models. These three steps all culminate to the final step of debiasing, which replaces the text and the image with neutralized or reduced counterparts, which for images is done by comparing the bias scores. The results so far indicate that this approach is promising, with the text debiasing strategy being able to identify many potential biased words and phrases, and the ViT model showcasing effective training. The semantic alignment model also is efficient. However, more time, particularly in training, and resources are needed to obtain better results. A human evaluation portion was also proposed to ensure semantic consistency of the newly generated text and images.