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Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder : Nature Neuroscience : Nature Research

#artificialintelligence

Each boxplot corresponds to the distribution of the AUC obtained from 50 evaluations (10 five-fold cross-validation; ends and center line: 25th, 50th and 75th percentiles of AUC, respectively; notches: 95% confidence interval around the median; whiskers: 1.5 interquartile range above and below the 25th and 75th percentiles; dots: outliers). Evidence-weighted classifier (purple) significantly outperforms all the other classifiers (Wilcoxon rank-sum test, U 2,399, P 1 10 14). Enrichment P-values atop each bar were calculated using a permutation test (Online Methods). Fractions of genes in the gene set (y axis) that occurred within each decile of the genome-wide ranking (x axis; first decile colored red; number of genes in top decile/total and enrichment P-value in parentheses).


Alexa, Tell Me Where You're Going Next

#artificialintelligence

In the Game of Thrones-like artificial intelligence competition between Houses Amazon, Apple, Facebook, Google, and Microsoft, the company most reticent to speak about its technology has usually been the one that ships planeloads full of stuff to consumers, hosts thousands of companies in its data centers, greenlit Catastrophe, and has a breakaway hit product that answers questions, plays music, and 4,998 or so other things. Yes, for some time, Amazon has been even more shrouded than the famously secret Apple, which opened up about its machine learning programs earlier this year. Lately, however, Amazon's head scientist and vice president of Alexa, Rohit Prasad, has been speaking up in public, making the case for his company's prowess in voice recognition and natural language understanding. Alexa, of course, is the conversational platform that supports that aforementioned hit product, Echo. Today Prasad is giving an Alexa "State of the Union" address at the Amazon Web Services conference in Las Vegas, announcing an improved version of the Alexa Skills Kit, which helps developers create the equivalent of apps for the platform; a beefed-up Alexa Voice Service, which will make it easier to transform third-party devices like refrigerators and cars into Alexa bots; a partnership with Intel; and the Alexa Accelerator that, with the startup incubator Techstars, will run a 13-week program to help newcomers build Alexa skills.


How to forecast using Regression Analysis in R

@machinelearnbot

Regression is the first technique you'll learn in most analytics books. It is a very useful and simple form of supervised learning used to predict a quantitative response. By building a regression model to predict the value of Y, you're trying to get an equation like this for an output, Y given inputs x1, x2, x3โ€ฆ Sometimes there may be terms of the form b4x1.x2 b5.x1 2โ€ฆ that add to the accuracy of the regression model. The trick is to apply some intuition as to what terms could help determine Y and then test the intuition. Scatter plots can help you tease out these relationships as we will show in the R section below.


Cognitive Toolkit (CNTK) Deep Dive and Hands-on Tutorial - Nov 2016

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How to Implement Bagging From Scratch With Python - Machine Learning Mastery

#artificialintelligence

Decision trees are a simple and powerful predictive modeling technique, but they suffer from high-variance. This means that trees can get very different results given different training data. A technique to make decision trees more robust and to achieve better performance is called bootstrap aggregation or bagging for short. In this tutorial, you will discover how to implement the bagging procedure with decision trees from scratch with Python. How to apply bagging to your own predictive modeling problems.


Use of Artificial Intelligence in customer interaction is getting intelligent

#artificialintelligence

Artificial Intelligence (AI) is back in the headlines as more and more companies like Amazon, Google, Facebook, Twitter and Microsoft have started to commercialize its use. Four important developments in the past few days on this front caught our eye. The most recent was last week's announcement of an AI partnership by Google, Facebook, Amazon, IBM and Microsoft. The new alliance is dedicated to advancing public understanding of the sector, as well as coming up with standards for future researchers to abide by. The other important development was the release of a research report by Forrester โ€“ The Top Emerging Technologies to Watch: 2017 to 2021.


Modeling trajectories of mental health: challenges and opportunities

arXiv.org Machine Learning

More than two thirds of mental health problems have their onset during childhood or adolescence. Identifying children at risk for mental illness later in life and predicting the type of illness is not easy. We set out to develop a platform to define subtypes of childhood social-emotional development using longitudinal, multifactorial trait-based measures. Subtypes discovered through this study could ultimately advance psychiatric knowledge of the early behavioural signs of mental illness. To this extent we have examined two types of models: latent class mixture models and GP-based models. Our findings indicate that while GP models come close in accuracy of predicting future trajectories, LCMMs predict the trajectories as well in a fraction of the time. Unfortunately, neither of the models are currently accurate enough to lead to immediate clinical impact. The available data related to the development of childhood mental health is often sparse with only a few time points measured and require novel methods with improved efficiency and accuracy.


Large scale modeling of antimicrobial resistance with interpretable classifiers

arXiv.org Machine Learning

Antimicrobial resistance is an important public health concern that has implications in the practice of medicine worldwide. Accurately predicting resistance phenotypes from genome sequences shows great promise in promoting better use of antimicrobial agents, by determining which antibiotics are likely to be effective in specific clinical cases. In healthcare, this would allow for the design of treatment plans tailored for specific individuals, likely resulting in better clinical outcomes for patients with bacterial infections. In this work, we present the recent work of Drouin et al. (2016) on using Set Covering Machines to learn highly interpretable models of antibiotic resistance and complement it by providing a large scale application of their method to the entire PATRIC database. We report prediction results for 36 new datasets and present the Kover AMR platform, a new web-based tool allowing the visualization and interpretation of the generated models.


Positive blood culture detection in time series data using a BiLSTM network

arXiv.org Machine Learning

The presence of bacteria or fungi in the bloodstream of patients is abnormal and can lead to life-threatening conditions. A computational model based on a bidirectional long short-term memory artificial neural network, is explored to assist doctors in the intensive care unit to predict whether examination of blood cultures of patients will return positive. As input it uses nine monitored clinical parameters, presented as time series data, collected from 2177 ICU admissions at the Ghent University Hospital. Our main goal is to determine if general machine learning methods and more specific, temporal models, can be used to create an early detection system. This preliminary research obtains an area of 71.95% under the precision recall curve, proving the potential of temporal neural networks in this context.


On the Pitfalls of Nested Monte Carlo

arXiv.org Machine Learning

There is an increasing interest in estimating expectations outside of the classical inference framework, such as for models expressed as probabilistic programs. Many of these contexts call for some form of nested inference to be applied. In this paper, we analyse the behaviour of nested Monte Carlo (NMC) schemes, for which classical convergence proofs are insufficient. We give conditions under which NMC will converge, establish a rate of convergence, and provide empirical data that suggests that this rate is observable in practice. Finally, we prove that general-purpose nested inference schemes are inherently biased. Our results serve to warn of the dangers associated with naive composition of inference and models.