Heart failure (HF) is one of the leading causes of rehospitalization among older adults in the United States. Although clinical notes contain rich, detailed patient information and make up a large portion of electronic health records (EHRs), they remain underutilized for HF readmission risk analysis. Traditional computational models for HF readmission often rely on expert-crafted rules, medical thesauri, and ontologies to interpret clinical notes, which are typically written under time pressure and may contain misspellings, abbreviations, and domain-specific jargon. We present ClinNoteAgents, an LLM-based multi-agent framework that transforms free-text clinical notes into (1) structured representations of clinical and social risk factors for association analysis and (2) clinician-style abstractions for HF 30-day readmission prediction. We evaluate ClinNoteAgents on 3,544 notes from 2,065 patients (readmission rate=35.16%), demonstrating strong performance in extracting risk factors from free-text, identifying key contributing factors, and predicting readmission risk. By reducing reliance on structured fields and minimizing manual annotation and model training, ClinNoteAgents provides a scalable and interpretable approach to note-based HF readmission risk modeling in data-limited healthcare systems.

Progress in computer-aided synthesis planning (CASP) is obscured by the lack of standardized evaluation infrastructure and the reliance on metrics that prioritize topological completion over chemical validity. We introduce RetroCast, a unified evaluation suite that standardizes heterogeneous model outputs into a common schema to enable statistically rigorous, apples-to-apples comparison. The framework includes a reproducible benchmarking pipeline with stratified sampling and bootstrapped confidence intervals, accompanied by SynthArena, an interactive platform for qualitative route inspection. We utilize this infrastructure to evaluate leading search-based and sequence-based algorithms on a new suite of standardized benchmarks. Our analysis reveals a divergence between "solvability" (stock-termination rate) and route quality; high solvability scores often mask chemical invalidity or fail to correlate with the reproduction of experimental ground truths. Furthermore, we identify a "complexity cliff" in which search-based methods, despite high solvability rates, exhibit a sharp performance decay in reconstructing long-range synthetic plans compared to sequence-based approaches. We release the full framework, benchmark definitions, and a standardized database of model predictions to support transparent and reproducible development in the field.

In recent years, large language models (LLMs) have demonstrated strong performance on multilingual tasks. Given its wide range of applications, cross-cultural understanding capability is a crucial competency. However, existing benchmarks for evaluating whether LLMs genuinely possess this capability suffer from three key limitations: a lack of contextual scenarios, insufficient cross-cultural concept mapping, and limited deep cultural reasoning capabilities. To address these gaps, we propose SAGE, a scenario-based benchmark built via cross-cultural core concept alignment and generative task design, to evaluate LLMs' cross-cultural understanding and reasoning. Grounded in cultural theory, we categorize cross-cultural capabilities into nine dimensions. Using this framework, we curated 210 core concepts and constructed 4530 test items across 15 specific real-world scenarios, organized under four broader categories of cross-cultural situations, following established item design principles. The SAGE dataset supports continuous expansion, and experiments confirm its transferability to other languages. It reveals model weaknesses across both dimensions and scenarios, exposing systematic limitations in cross-cultural reasoning. While progress has been made, LLMs are still some distance away from reaching a truly nuanced cross-cultural understanding. In compliance with the anonymity policy, we include data and code in the supplement materials. In future versions, we will make them publicly available online.

Uniform Meaning Representation (UMR) is a novel graph-based semantic representation which captures the core meaning of a text, with flexibility incorporated into the annotation schema such that the breadth of the world's languages can be annotated (including low-resource languages). While UMR shows promise in enabling language documentation, improving low-resource language technologies, and adding interpretability, the downstream applications of UMR can only be fully explored when text-to-UMR parsers enable the automatic large-scale production of accurate UMR graphs at test time. Prior work on text-to-UMR parsing is limited to date. In this paper, we introduce two methods for English text-to-UMR parsing, one of which fine-tunes existing parsers for Abstract Meaning Representation and the other, which leverages a converter from Universal Dependencies, using prior work as a baseline. Our best-performing model, which we call SETUP, achieves an AnCast score of 84 and a SMATCH++ score of 91, indicating substantial gains towards automatic UMR parsing.

Self-supervised learning (SSL) plays a central role in molecular representation learning. Yet, many recent innovations in masking-based pretraining are introduced as heuristics and lack principled evaluation, obscuring which design choices are genuinely effective. This work cast the entire pretrain-finetune workflow into a unified probabilistic framework, enabling a transparent comparison and deeper understanding of masking strategies. Building on this formalism, we conduct a controlled study of three core design dimensions: masking distribution, prediction target, and encoder architecture, under rigorously controlled settings. We further employ information-theoretic measures to assess the informativeness of pretraining signals and connect them to empirically benchmarked downstream performance. Our findings reveal a surprising insight: sophisticated masking distributions offer no consistent benefit over uniform sampling for common node-level prediction tasks. Instead, the choice of prediction target and its synergy with the encoder architecture are far more critical. Specifically, shifting to semantically richer targets yields substantial downstream improvements, particularly when paired with expressive Graph Transformer encoders. These insights offer practical guidance for developing more effective SSL methods for molecular graphs.

Despite substantial investment in safety alignment, the vulnerability of large language models to sophisticated multi-turn adversarial attacks remains poorly characterized, and whether model scale or inference mode affects robustness is unknown. This study employed the TEMPEST multi-turn attack framework to evaluate ten frontier models from eight vendors across 1,000 harmful behaviors, generating over 97,000 API queries across adversarial conversations with automated evaluation by independent safety classifiers. Results demonstrated a spectrum of vulnerability: six models achieved 96% to 100% attack success rate (ASR), while four showed meaningful resistance, with ASR ranging from 42% to 78%; enabling extended reasoning on identical architecture reduced ASR from 97% to 42%. These findings indicate that safety alignment quality varies substantially across vendors, that model scale does not predict adversarial robustness, and that thinking mode provides a deployable safety enhancement. Collectively, this work establishes that current alignment techniques remain fundamentally vulnerable to adaptive multi-turn attacks regardless of model scale, while identifying deliberative inference as a promising defense direction.

Complex biological networks are fundamental to biomedical science, capturing interactions among molecules, cells, genes, and tissues. Deciphering these networks is critical for understanding health and disease, yet their scale and complexity represent a daunting challenge for current computational methods. Traditional biological network analysis methods, including deep learning approaches, while powerful, face inherent challenges such as limited scalability, oversmoothing long-range dependencies, difficulty in multimodal integration, expressivity bounds, and poor interpretability. We present Graph2Image, a framework that transforms large biological networks into sets of two-dimensional images by spatially arranging representative network nodes on a 2D grid. This transformation decouples the nodes as images, enabling the use of convolutional neural networks (CNNs) with global receptive fields and multi-scale pyramids, thus overcoming limitations of existing biological network analysis methods in scalability, memory efficiency, and long-range context capture. Graph2Image also facilitates seamless integration with other imaging and omics modalities and enhances interpretability through direct visualization of node-associated images. When applied to several large-scale biological network datasets, Graph2Image improved classification accuracy by up to 67.2% over existing methods and provided interpretable visualizations that revealed biologically coherent patterns. It also allows analysis of very large biological networks (nodes > 1 billion) on a personal computer. Graph2Image thus provides a scalable, interpretable, and multimodal-ready approach for biological network analysis, offering new opportunities for disease diagnosis and the study of complex biological systems.

This paper presents a hetero-associative sequential memory system for mobile manipulators that learns compact, neuromorphic bindings between robot joint states and tactile observations to produce step-wise action decisions with low compute and memory cost. The method encodes joint angles via population place coding and converts skin-measured forces into spike-rate features using an Izhikevich neuron model; both signals are transformed into bipolar binary vectors and bound element-wise to create associations stored in a large-capacity sequential memory. To improve separability in binary space and inject geometry from touch, we introduce 3D rotary positional embeddings that rotate subspaces as a function of sensed force direction, enabling fuzzy retrieval through a softmax weighted recall over temporally shifted action patterns. On a Toyota Human Support Robot covered by robot skin, the hetero-associative sequential memory system realizes a pseudocompliance controller that moves the link under touch in the direction and with speed correlating to the amplitude of applied force, and it retrieves multi-joint grasp sequences by continuing tactile input. The system sets up quickly, trains from synchronized streams of states and observations, and exhibits a degree of generalization while remaining economical. Results demonstrate single-joint and full-arm behaviors executed via associative recall, and suggest extensions to imitation learning, motion planning, and multi-modal integration.

Among the various types of cyberattacks, identifying zero-day attacks is problematic because they are unknown to security systems as their pattern and characteristics do not match known blacklisted attacks. There are many Machine Learning (ML) models designed to analyze and detect network attacks, especially using supervised models. However, these models are designed to classify samples (normal and attacks) based on the patterns they learn during the training phase, so they perform inefficiently on unseen attacks. This research addresses this issue by evaluating five different supervised models to assess their performance and execution time in predicting zero-day attacks and find out which model performs accurately and quickly. The goal is to improve the performance of these supervised models by not only proposing a framework that applies grid search, dimensionality reduction and oversampling methods to overcome the imbalance problem, but also comparing the effectiveness of oversampling on ml model metrics, in particular the accuracy. To emulate attack detection in real life, this research applies a highly imbalanced data set and only exposes the classifiers to zero-day attacks during the testing phase, so the models are not trained to flag the zero-day attacks. Our results show that Random Forest (RF) performs best under both oversampling and non-oversampling conditions, this increased effectiveness comes at the cost of longer processing times. Therefore, we selected XG Boost (XGB) as the top model due to its fast and highly accurate performance in detecting zero-day attacks.

Bug localization remains a critical yet time-consuming challenge in large-scale software repositories. Traditional information retrieval-based bug localization (IRBL) methods rely on unchanged bug descriptions, which often contain noisy information, leading to poor retrieval accuracy. Recent advances in large language models (LLMs) have improved bug localization through query reformulation, yet the effect on agent performance remains unexplored. In this study, we investigate how an LLM-powered agent can improve file-level bug localization via lightweight query reformulation and summarization. We first employ an open-source, non-fine-tuned LLM to extract key information from bug reports, such as identifiers and code snippets, and reformulate queries pre-retrieval. Our agent then orchestrates BM25 retrieval using these preprocessed queries, automating localization workflow at scale. Using the best-performing query reformulation technique, our agent achieves 35% better ranking in first-file retrieval than our BM25 baseline and up to +22% file retrieval performance over SWE-agent.