Regular documentation of progress notes is one of the main contributors to clinician burden. The abundance of structured chart information in medical records further exacerbates the burden, however, it also presents an opportunity to automate the generation of progress notes. In this paper, we propose a task to automate progress note generation using structured or tabular information present in electronic health records. To this end, we present a novel framework and a large dataset, ChartPNG, for the task which contains $7089$ annotation instances (each having a pair of progress notes and interim structured chart data) across $1616$ patients. We establish baselines on the dataset using large language models from general and biomedical domains. We perform both automated (where the best performing Biomistral model achieved a BERTScore F1 of $80.53$ and MEDCON score of $19.61$) and manual (where we found that the model was able to leverage relevant structured data with $76.9\%$ accuracy) analyses to identify the challenges with the proposed task and opportunities for future research.

Large Language Models (LLMs) are susceptible to security and safety threats, such as prompt injection, prompt extraction, and harmful requests. One major cause of these vulnerabilities is the lack of an instruction hierarchy. Modern LLM architectures treat all inputs equally, failing to distinguish between and prioritize various types of instructions, such as system messages, user prompts, and data. As a result, lower-priority user prompts may override more critical system instructions, including safety protocols. Existing approaches to achieving instruction hierarchy, such as delimiters and instruction-based training, do not address this issue at the architectural level. We introduce the Instructional Segment Embedding (ISE) technique, inspired by BERT, to modern large language models, which embeds instruction priority information directly into the model. This approach enables models to explicitly differentiate and prioritize various instruction types, significantly improving safety against malicious prompts that attempt to override priority rules. Our experiments on the Structured Query and Instruction Hierarchy benchmarks demonstrate an average robust accuracy increase of up to 15.75% and 18.68%, respectively. Furthermore, we observe an improvement in instructionfollowing capability of up to 4.1% evaluated on AlpacaEval. Overall, our approach offers a promising direction for enhancing the safety and effectiveness of LLM architectures. Large Language Models (LLMs) have shown significant potential in enabling sophisticated agentic applications and facilitating autonomous decision-making across various domains, such as web agents, educational tools, medical assistance, and more (Yao et al., 2022; Gan et al., 2023; Abbasian et al., 2024). To optimize the use of AI applications, a structured approach to implementation is widely adopted. This involves clear distinctions among system instructions, user prompts, and data inputs, as illustrated in Figure 1. These instructions contain specific priorities that help the model execute functionalities correctly and better assist users. Modern LLMs process text without formal mechanisms to differentiate and prioritize instructions. Consequently, Figure 1: A demonstration of the hierarchy malicious attackers can easily exploit this limitation to of instructions, including system override priority roles, leading to various vulnerabilities. Prompt extraction (Zhang et al., 2024) aim to extract system messages, revealing proprietary prompts.

Collusion is a complex phenomenon in which companies secretly collaborate to engage in fraudulent practices. This paper presents an innovative methodology for detecting and predicting collusion patterns in different national markets using neural networks (NNs) and graph neural networks (GNNs). GNNs are particularly well suited to this task because they can exploit the inherent network structures present in collusion and many other economic problems. Our approach consists of two phases: In Phase I, we develop and train models on individual market datasets from Japan, the United States, two regions in Switzerland, Italy, and Brazil, focusing on predicting collusion in single markets. In Phase II, we extend the models' applicability through zero-shot learning, employing a transfer learning approach that can detect collusion in markets in which training data is unavailable. This phase also incorporates out-of-distribution (OOD) generalization to evaluate the models' performance on unseen datasets from other countries and regions. In our empirical study, we show that GNNs outperform NNs in detecting complex collusive patterns. This research contributes to the ongoing discourse on preventing collusion and optimizing detection methodologies, providing valuable guidance on the use of NNs and GNNs in economic applications to enhance market fairness and economic welfare.

In the field of weather forecasting, traditional models often grapple with discretization errors and time-dependent source discrepancies, which limit their predictive performance. In this paper, we present WeatherODE, a novel one-stage, physics-driven ordinary differential equation (ODE) model designed to enhance weather forecasting accuracy. By leveraging wave equation theory and integrating a time-dependent source model, WeatherODE effectively addresses the challenges associated with time-discretization error and dynamic atmospheric processes. Moreover, we design a CNN-ViT-CNN sandwich structure, facilitating efficient learning dynamics tailored for distinct yet interrelated tasks with varying optimization biases in advection equation estimation. Through rigorous experiments, WeatherODE demonstrates superior performance in both global and regional weather forecasting tasks, outperforming recent state-of-the-art approaches by significant margins of over 40.0\% and 31.8\% in root mean square error (RMSE), respectively. The source code is available at \url{https://github.com/DAMO-DI-ML/WeatherODE}.

Large language models (LLMs) have significantly advanced performance across a spectrum of natural language processing (NLP) tasks. Yet, their application to knowledge graphs (KGs), which describe facts in the form of triplets and allow minimal hallucinations, remains an underexplored frontier. In this paper, we investigate the integration of LLMs with KGs by introducing a specialized KG Language (KGL), where a sentence precisely consists of an entity noun, a relation verb, and ends with another entity noun. Despite KGL's unfamiliar vocabulary to the LLM, we facilitate its learning through a tailored dictionary and illustrative sentences, and enhance context understanding via real-time KG context retrieval and KGL token embedding augmentation. Our results reveal that LLMs can achieve fluency in KGL, drastically reducing errors compared to conventional KG embedding methods on KG completion. Furthermore, our enhanced LLM shows exceptional competence in generating accurate three-word sentences from an initial entity and interpreting new unseen terms out of KGs.

Factors are a foundational component of legal analysis and computational models of legal reasoning. These factor-based representations enable lawyers, judges, and AI and Law researchers to reason about legal cases. In this paper, we introduce a methodology that leverages large language models (LLMs) to discover lists of factors that effectively represent a legal domain. Our method takes as input raw court opinions and produces a set of factors and associated definitions. We demonstrate that a semi-automated approach, incorporating minimal human involvement, produces factor representations that can predict case outcomes with moderate success, if not yet as well as expert-defined factors can.

This paper introduces PublicHearingBR, a Brazilian Portuguese dataset designed for summarizing long documents. The dataset consists of transcripts of public hearings held by the Brazilian Chamber of Deputies, paired with news articles and structured summaries containing the individuals participating in the hearing and their statements or opinions. The dataset supports the development and evaluation of long document summarization systems in Portuguese. Our contributions include the dataset, a hybrid summarization system to establish a baseline for future studies, and a discussion on evaluation metrics for summarization involving large language models, addressing the challenge of hallucination in the generated summaries. As a result of this discussion, the dataset also provides annotated data that can be used in Natural Language Inference tasks in Portuguese.

Embeddings are now used to underpin a wide variety of data management tasks, including entity resolution, dataset search and semantic type detection. Such applications often involve datasets with numerical columns, but there has been more emphasis placed on the semantics of categorical data in embeddings than on the distinctive features of numerical data. In this paper, we propose a method called Gem (Gaussian mixture model embeddings) that creates embeddings that build on numerical value distributions from columns. The proposed method specializes a Gaussian Mixture Model (GMM) to identify and cluster columns with similar value distributions. We introduce a signature mechanism that generates a probability matrix for each column, indicating its likelihood of belonging to specific Gaussian components, which can be used for different applications, such as to determine semantic types. Finally, we generate embeddings for three numerical data properties: distributional, statistical, and contextual. Our core method focuses solely on numerical columns without using table names or neighboring columns for context. However, the method can be combined with other types of evidence, and we later integrate attribute names with the Gaussian embeddings to evaluate the method's contribution to improving overall performance. We compare Gem with several baseline methods for numeric only and numeric + context tasks, showing that Gem consistently outperforms the baselines on four benchmark datasets.

Animal classification systems are based on evolutionary relationships between different organisms, known as phylogeny. This approach allows us to organize species in a way that reflects our understanding of how they evolved from common ancestors. Phylogenetic trees are diagrams that graphically represent these evolutionary relationships between organisms. In these representations, the species of interest are placed at the tips of branches that emerge from a point representing a common ancestor. The natural mathematical object associated to this situation is a tree (a graph with no cycles) with a root (the common ancestor). It is important to note that the hypotheses regarding how different species may have descended from a common ancestor are typically based on physical traits (which are therefore interpretable) or directly on DNA sequences.

One of the main current challenges in Educational Data Mining and Learning Analytics is the portability or transferability of predictive models obtained for a particular course so that they can be applied to other different courses. To handle this challenge, one of the foremost problems is the models excessive dependence on the low-level attributes used to train them, which reduces the models portability. To solve this issue, the use of high level attributes with more semantic meaning, such as ontologies, may be very useful. Along this line, we propose the utilization of an ontology that uses a taxonomy of actions that summarises students interactions with the Moodle learning management system. We compare the results of this proposed approach against our previous results when we used low-level raw attributes obtained directly from Moodle logs. The results indicate that the use of the proposed ontology improves the portability of the models in terms of predictive accuracy. The main contribution of this paper is to show that the ontological models obtained in one source course can be applied to other different target courses with similar usage levels without losing prediction accuracy.