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How Important is Domain Specificity in Language Models and Instruction Finetuning for Biomedical Relation Extraction?

arXiv.org Artificial Intelligence

Cutting edge techniques developed in the general NLP domain are often subsequently applied to the high-value, data-rich biomedical domain. The past few years have seen generative language models (LMs), instruction finetuning, and few-shot learning become foci of NLP research. As such, generative LMs pretrained on biomedical corpora have proliferated and biomedical instruction finetuning has been attempted as well, all with the hope that domain specificity improves performance on downstream tasks. Given the nontrivial effort in training such models, we investigate what, if any, benefits they have in the key biomedical NLP task of relation extraction. Specifically, we address two questions: (1) Do LMs trained on biomedical corpora outperform those trained on general domain corpora? (2) Do models instruction finetuned on biomedical datasets outperform those finetuned on assorted datasets or those simply pretrained? We tackle these questions using existing LMs, testing across four datasets. In a surprising result, general-domain models typically outperformed biomedical-domain models. However, biomedical instruction finetuning improved performance to a similar degree as general instruction finetuning, despite having orders of magnitude fewer instructions. Our findings suggest it may be more fruitful to focus research effort on larger-scale biomedical instruction finetuning of general LMs over building domain-specific biomedical LMs


MatchNAS: Optimizing Edge AI in Sparse-Label Data Contexts via Automating Deep Neural Network Porting for Mobile Deployment

arXiv.org Artificial Intelligence

Recent years have seen the explosion of edge intelligence with powerful Deep Neural Networks (DNNs). One popular scheme is training DNNs on powerful cloud servers and subsequently porting them to mobile devices after being lightweight. Conventional approaches manually specialized DNNs for various edge platforms and retrain them with real-world data. However, as the number of platforms increases, these approaches become labour-intensive and computationally prohibitive. Additionally, real-world data tends to be sparse-label, further increasing the difficulty of lightweight models. In this paper, we propose MatchNAS, a novel scheme for porting DNNs to mobile devices. Specifically, we simultaneously optimise a large network family using both labelled and unlabelled data and then automatically search for tailored networks for different hardware platforms. MatchNAS acts as an intermediary that bridges the gap between cloud-based DNNs and edge-based DNNs.


Round Trip Translation Defence against Large Language Model Jailbreaking Attacks

arXiv.org Artificial Intelligence

Large language models (LLMs) are susceptible to social-engineered attacks that are human-interpretable but require a high level of comprehension for LLMs to counteract. Existing defensive measures can only mitigate less than half of these attacks at most. To address this issue, we propose the Round Trip Translation (RTT) method, the first algorithm specifically designed to defend against social-engineered attacks on LLMs. RTT paraphrases the adversarial prompt and generalizes the idea conveyed, making it easier for LLMs to detect induced harmful behavior. This method is versatile, lightweight, and transferrable to different LLMs. Our defense successfully mitigated over 70% of Prompt Automatic Iterative Refinement (PAIR) attacks, which is currently the most effective defense to the best of our knowledge. We are also the first to attempt mitigating the MathsAttack and reduced its attack success rate by almost 40%. Our code is publicly available at https://github.com/Cancanxxx/Round_Trip_Translation_Defence


Radio-astronomical Image Reconstruction with Conditional Denoising Diffusion Model

arXiv.org Artificial Intelligence

Reconstructing sky models from dirty radio images for accurate source localization and flux estimation is crucial for studying galaxy evolution at high redshift, especially in deep fields using instruments like the Atacama Large Millimetre Array (ALMA). With new projects like the Square Kilometre Array (SKA), there's a growing need for better source extraction methods. Current techniques, such as CLEAN and PyBDSF, often fail to detect faint sources, highlighting the need for more accurate methods. This study proposes using stochastic neural networks to rebuild sky models directly from dirty images. This method can pinpoint radio sources and measure their fluxes with related uncertainties, marking a potential improvement in radio source characterization. We tested this approach on 10164 images simulated with the CASA tool simalma, based on ALMA's Cycle 5.3 antenna setup. We applied conditional Denoising Diffusion Probabilistic Models (DDPMs) for sky models reconstruction, then used Photutils to determine source coordinates and fluxes, assessing the model's performance across different water vapor levels. Our method showed excellence in source localization, achieving more than 90% completeness at a signal-to-noise ratio (SNR) as low as 2. It also surpassed PyBDSF in flux estimation, accurately identifying fluxes for 96% of sources in the test set, a significant improvement over CLEAN+ PyBDSF's 57%. Conditional DDPMs is a powerful tool for image-to-image translation, yielding accurate and robust characterisation of radio sources, and outperforming existing methodologies. While this study underscores its significant potential for applications in radio astronomy, we also acknowledge certain limitations that accompany its usage, suggesting directions for further refinement and research.


User Modeling and User Profiling: A Comprehensive Survey

arXiv.org Artificial Intelligence

The integration of artificial intelligence (AI) into daily life, particularly through information retrieval and recommender systems, has necessitated advanced user modeling and profiling techniques to deliver personalized experiences. These techniques aim to construct accurate user representations based on the rich amounts of data generated through interactions with these systems. This paper presents a comprehensive survey of the current state, evolution, and future directions of user modeling and profiling research. We provide a historical overview, tracing the development from early stereotype models to the latest deep learning techniques, and propose a novel taxonomy that encompasses all active topics in this research area, including recent trends. Our survey highlights the paradigm shifts towards more sophisticated user profiling methods, emphasizing implicit data collection, multi-behavior modeling, and the integration of graph data structures. We also address the critical need for privacy-preserving techniques and the push towards explainability and fairness in user modeling approaches. By examining the definitions of core terminology, we aim to clarify ambiguities and foster a clearer understanding of the field by proposing two novel encyclopedic definitions of the main terms. Furthermore, we explore the application of user modeling in various domains, such as fake news detection, cybersecurity, and personalized education. This survey serves as a comprehensive resource for researchers and practitioners, offering insights into the evolution of user modeling and profiling and guiding the development of more personalized, ethical, and effective AI systems.


ICON: Improving Inter-Report Consistency of Radiology Report Generation via Lesion-aware Mix-up Augmentation

arXiv.org Artificial Intelligence

Previous research on radiology report generation has made significant progress in terms of increasing the clinical accuracy of generated reports. In this paper, we emphasize another crucial quality that it should possess, i.e., inter-report consistency, which refers to the capability of generating consistent reports for semantically equivalent radiographs. This quality is even of greater significance than the overall report accuracy in terms of ensuring the system's credibility, as a system prone to providing conflicting results would severely erode users' trust. Regrettably, existing approaches struggle to maintain inter-report consistency, exhibiting biases towards common patterns and susceptibility to lesion variants. To address this issue, we propose ICON, which improves the inter-report consistency of radiology report generation. Aiming at enhancing the system's ability to capture the similarities in semantically equivalent lesions, our approach involves first extracting lesions from input images and examining their characteristics. Then, we introduce a lesion-aware mix-up augmentation technique to ensure that the representations of the semantically equivalent lesions align with the same attributes, by linearly interpolating them during the training phase. Extensive experiments on three publicly available chest X-ray datasets verify the effectiveness of our approach, both in terms of improving the consistency and accuracy of the generated reports.


CloudNine: Analyzing Meteorological Observation Impact on Weather Prediction Using Explainable Graph Neural Networks

arXiv.org Artificial Intelligence

The impact of meteorological observations on weather forecasting varies with sensor type, location, time, and other environmental factors. Thus, quantitative analysis of observation impacts is crucial for effective and efficient development of weather forecasting systems. However, the existing impact analysis methods are difficult to be widely applied due to their high dependencies on specific forecasting systems. Also, they cannot provide observation impacts at multiple spatio-temporal scales, only global impacts of observation types. To address these issues, we present a novel system called ``CloudNine,'' which allows analysis of individual observations' impacts on specific predictions based on explainable graph neural networks (XGNNs). Combining an XGNN-based atmospheric state estimation model with a numerical weather prediction model, we provide a web application to search for observations in the 3D space of the Earth system and to visualize the impact of individual observations on predictions in specific spatial regions and time periods.


ChatEL: Entity Linking with Chatbots

arXiv.org Artificial Intelligence

Entity Linking (EL) is an essential and challenging task in natural language processing that seeks to link some text representing an entity within a document or sentence with its corresponding entry in a dictionary or knowledge base. Most existing approaches focus on creating elaborate contextual models that look for clues the words surrounding the entity-text to help solve the linking problem. Although these fine-tuned language models tend to work, they can be unwieldy, difficult to train, and do not transfer well to other domains. Fortunately, Large Language Models (LLMs) like GPT provide a highly-advanced solution to the problems inherent in EL models, but simply naive prompts to LLMs do not work well. In the present work, we define ChatEL, which is a three-step framework to prompt LLMs to return accurate results. Overall the ChatEL framework improves the average F1 performance across 10 datasets by more than 2%. Finally, a thorough error analysis shows many instances with the ground truth labels were actually incorrect, and the labels predicted by ChatEL were actually correct. This indicates that the quantitative results presented in this paper may be a conservative estimate of the actual performance.


Self-DC: When to retrieve and When to generate? Self Divide-and-Conquer for Compositional Unknown Questions

arXiv.org Artificial Intelligence

Retrieve-then-read and generate-then-read are two typical solutions to handle unknown and known questions in open-domain question-answering, while the former retrieves necessary external knowledge and the later prompt the large language models to generate internal known knowledge encoded in the parameters. However, few of previous works consider the compositional unknown questions, which consist of several known or unknown sub-questions. Thus, simple binary classification (known or unknown) becomes sub-optimal and inefficient since it will call external retrieval excessively for each compositional unknown question. To this end, we propose the first Compositional unknown Question-Answering dataset (CuQA), and introduce a Self Divide-and-Conquer (Self-DC) framework to empower LLMs to adaptively call different methods on-demand, resulting in better performance and efficiency. Experimental results on two datasets (CuQA and FreshQA) demonstrate that Self-DC can achieve comparable or even better performance with much more less retrieval times compared with several strong baselines.


Softmax Probabilities (Mostly) Predict Large Language Model Correctness on Multiple-Choice Q&A

arXiv.org Artificial Intelligence

Although large language models (LLMs) perform impressively on many tasks, overconfidence remains a problem. We hypothesized that on multiple-choice Q&A tasks, wrong answers would be associated with smaller maximum softmax probabilities (MSPs) compared to correct answers. We comprehensively evaluate this hypothesis on ten open-source LLMs and five datasets, and find strong evidence for our hypothesis among models which perform well on the original Q&A task. For the six LLMs with the best Q&A performance, the AUROC derived from the MSP was better than random chance with p < 10^{-4} in 59/60 instances. Among those six LLMs, the average AUROC ranged from 60% to 69%. Leveraging these findings, we propose a multiple-choice Q&A task with an option to abstain and show that performance can be improved by selectively abstaining based on the MSP of the initial model response. We also run the same experiments with pre-softmax logits instead of softmax probabilities and find similar (but not identical) results.