Persistent homology (PH) encodes global information, such as cycles, and is thus increasingly integrated into graph neural networks (GNNs). PH methods in GNNs typically traverse an increasing sequence of subgraphs. In this work, we first expose limitations of this inclusion procedure. To remedy these shortcomings, we analyze contractions as a principled topological operation, in particular, for graph representation learning. We study the persistence of contraction sequences, which we call Contraction Homology (CH). We establish that forward PH and CH differ in expressivity. We then introduce Hourglass Persistence, a class of topological descriptors that interleave a sequence of inclusions and contractions to boost expressivity, learnability, and stability. We also study related families parametrized by two paradigms. We also discuss how our framework extends to simplicial and cellular networks. We further design efficient algorithms that are pluggable into end-to-end differentiable GNN pipelines, enabling consistent empirical improvements over many PH methods across standard real-world graph datasets. Code is available at \href{https://github.com/Aalto-QuML/Hourglass}{this https URL}.

We study the problem of detecting local geometry in random graphs. We introduce a model $\mathcal{G}(n, p, d, k)$, where a hidden community of average size $k$ has edges drawn as a random geometric graph on $\mathbb{S}^{d-1}$, while all remaining edges follow the Erdős--Rényi model $\mathcal{G}(n, p)$. The random geometric graph is generated by thresholding inner products of latent vectors on $\mathbb{S}^{d-1}$, with each edge having marginal probability equal to $p$. This implies that $\mathcal{G}(n, p, d, k)$ and $\mathcal{G}(n, p)$ are indistinguishable at the level of the marginals, and the signal lies entirely in the edge dependencies induced by the local geometry. We investigate both the information-theoretic and computational limits of detection. On the information-theoretic side, our upper bounds follow from three tests based on signed triangle counts: a global test, a scan test, and a constrained scan test; our lower bounds follow from two complementary methods: truncated second moment via Wishart--GOE comparison, and tensorization of KL divergence. These results together settle the detection threshold at $d = \widetildeΘ(k^2 \vee k^6/n^3)$ for fixed $p$, and extend the state-of-the-art bounds from the full model (i.e., $k = n$) for vanishing $p$. On the computational side, we identify a computational--statistical gap and provide evidence via the low-degree polynomial framework, as well as the suboptimality of signed cycle counts of length $\ell \geq 4$.

Neural Information Processing Systems http://nips.cc/

Several graph data mining, signal processing, and machine learning downstream tasks rely on information related to the eigenvectors of the associated adjacency or Laplacian matrix. Classical eigendecomposition methods are powerful when the matrix remains static but cannot be applied to problems where the matrix entries are updated or the number of rows and columns increases frequently. Such scenarios occur routinely in graph analytics when the graph is changing dynamically and either edges and/or nodes are being added and removed. This paper puts forth a new algorithmic framework to update the eigenvectors associated with the leading eigenvalues of an initial adjacency or Laplacian matrix as the graph evolves dynamically. The proposed algorithm is based on Rayleigh-Ritz projections, in which the original eigenvalue problem is projected onto a restricted subspace which ideally encapsulates the invariant subspace associated with the sought eigenvectors. Following ideas from eigenvector perturbation analysis, we present a new methodology to build the projection subspace. The proposed framework features lower computational and memory complexity with respect to competitive alternatives while empirical results show strong qualitative performance, both in terms of eigenvector approximation and accuracy of downstream learning tasks of central node identification and node clustering.

We propose learning graph representations from 2D feature maps for visual recognition. Our method draws inspiration from region based recognition, and learns to transform a 2D image into a graph structure. The vertices of the graph define clusters of pixels (regions), and the edges measure the similarity between these clusters in a feature space. Our method further learns to propagate information across all vertices on the graph, and is able to project the learned graph representation back into 2D grids. Our graph representation facilitates reasoning beyond regular grids and can capture long range dependencies among regions. We demonstrate that our model can be trained from end-to-end, and is easily integrated into existing networks. Finally, we evaluate our method on three challenging recognition tasks: semantic segmentation, object detection and object instance segmentation. For all tasks, our method outperforms state-of-the-art methods.

Most real-world networks are too large to be measured or studied directly and there is substantial interest in estimating global network properties from smaller sub-samples. One of the most important global properties is the number of vertices/nodes in the network. Estimating the number of vertices in a large network is a major challenge in computer science, epidemiology, demography, and intelligence analysis. In this paper we consider a population random graph G = (V;E) from the stochastic block model (SBM) with K communities/blocks. A sample is obtained by randomly choosing a subset W and letting G(W) be the induced subgraph in G of the vertices in W. In addition to G(W), we observe the total degree of each sampled vertex and its block membership. Given this partial information, we propose an efficient PopULation Size Estimation algorithm, called PULSE, that accurately estimates the size of the whole population as well as the size of each community. To support our theoretical analysis, we perform an exhaustive set of experiments to study the effects of sample size, K, and SBM model parameters on the accuracy of the estimates. The experimental results also demonstrate that PULSE significantly outperforms a widely-used method called the network scale-up estimator in a wide variety of scenarios.

Many popular network models rely on the assumption of (vertex) exchangeability, in which the distribution of the graph is invariant to relabelings of the vertices. However, the Aldous-Hoover theorem guarantees that these graphs are dense or empty with probability one, whereas many real-world graphs are sparse. We present an alternative notion of exchangeability for random graphs, which we call edge exchangeability, in which the distribution of a graph sequence is invariant to the order of the edges. We demonstrate that edge-exchangeable models, unlike models that are traditionally vertex exchangeable, can exhibit sparsity. To do so, we outline a general framework for graph generative models; by contrast to the pioneering work of Caron and Fox (2015), models within our framework are stationary across steps of the graph sequence. In particular, our model grows the graph by instantiating more latent atoms of a single random measure as the dataset size increases, rather than adding new atoms to the measure.

Staged tree models enhance Bayesian networks by incorporating context-specific dependencies through a stage-based structure. In this study, we present a new framework for estimating staged trees using hierarchical clustering on the probability simplex, utilizing simplex basesd divergences. We conduct a thorough evaluation of several distance and divergence metrics including Total Variation, Hellinger, Fisher, and Kaniadakis; alongside various linkage methods such as Ward.D2, average, complete, and McQuitty. We conducted the simulation experiments that reveals Total Variation, especially when combined with Ward.D2 linkage, consistently produces staged trees with better model fit, structure recovery, and computational efficiency. We assess performance by utilizing relative Bayesian Information Criterion (BIC), and Hamming distance. Our findings indicate that although Backward Hill Climbing (BHC) delivers competitive outcomes, it incurs a significantly higher computational cost. On the other, Total Variation divergence with Ward.D2 linkage, achieves similar performance while providing significantly better computational efficiency, making it a more viable option for large-scale or time sensitive tasks.

We present a learning-based approach to computing solutions for certain NP-hard problems. Our approach combines deep learning techniques with useful algorithmic elements from classic heuristics. The central component is a graph convolutional network that is trained to estimate the likelihood, for each vertex in a graph, of whether this vertex is part of the optimal solution. The network is designed and trained to synthesize a diverse set of solutions, which enables rapid exploration of the solution space via tree search. The presented approach is evaluated on four canonical NP-hard problems and five datasets, which include benchmark satisfiability problems and real social network graphs with up to a hundred thousand nodes. Experimental results demonstrate that the presented approach substantially outperforms recent deep learning work, and performs on par with highly optimized state-of-the-art heuristic solvers for some NP-hard problems. Experiments indicate that our approach generalizes across datasets, and scales to graphs that are orders of magnitude larger than those used during training.

In this paper we address the problem of Maximum Inner Product Search (MIPS) that is currently the computational bottleneck in a large number of machine learning applications. While being similar to the nearest neighbor search (NNS), the MIPS problem was shown to be more challenging, as the inner product is not a proper metric function. We propose to solve the MIPS problem with the usage of similarity graphs, i.e., graphs where each vertex is connected to the vertices that are the most similar in terms of some similarity function. Originally, the framework of similarity graphs was proposed for metric spaces and in this paper we naturally extend it to the non-metric MIPS scenario. We demonstrate that, unlike existing approaches, similarity graphs do not require any data transformation to reduce MIPS to the NNS problem and should be used for the original data. Moreover, we explain why such a reduction is detrimental for similarity graphs. By an extensive comparison to the existing approaches, we show that the proposed method is a game-changer in terms of the runtime/accuracy trade-off for the MIPS problem.