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Tensor-based second-order causal discovery

arXiv.org Machine Learning

Causal discovery seeks to uncover the causal dependencies among variables. For this purpose, we propose an algorithm called Tensor-based Second-order Causal Discovery (TSCD). Its input is a tensor obtained from the covariance matrices of observational and interventional data. Assuming the causal dependencies follow a linear structural equation model on a directed acyclic graph (DAG), TSCD outputs the DAG and the functions on its edges, requiring only that the noise variables are uncorrelated. We also implement a version of the approach for nonlinear models. Our focus on second-order statistics (via the covariance matrices) is motivated by their statistical and computational efficiency relative to higher-order moments, their identifiability relative to first-order statistics, and that they work regardless of whether the variables are Gaussian. We show that TSCD has identifiable causal order and parameters from a number of interventions that is logarithmic in the number of variables. Experiments show that TSCD is robust to noise, competitive with existing methods, and scales to hundreds of variables.


in Equivalence

Neural Information Processing Systems

We include two example test cases drawn from Kerssies et al. [2025] and Zhu et al. [2025] to illustrate529 the evaluation code for ResearchCodeBench.530


Generating Full-field Evolution of Physical Dynamics from Irregular Sparse Observations

Neural Information Processing Systems

Modeling and reconstructing multidimensional physical dynamics from sparse and off-grid observations presents a fundamental challenge in scientific research. Recently, diffusion-based generative modeling shows promising potential for physical simulation. However, current approaches typically operate on on-grid data with preset spatiotemporal resolution, but struggle with the sparsely observed and continuous nature of real-world physical dynamics. To fill the gaps, we present SDIFT, Sequential DIffusion in Functional Tucker space, a novel framework that generates full-field evolution of physical dynamics from irregular sparse observations. SDIFT leverages the functional Tucker model as the latent space representer with proven universal approximation property, and represents observations as latent functions and Tucker core sequences. We then construct a sequential diffusion model with temporally augmented UNet in the functional Tucker space, denoising noise drawn from a Gaussian process to generate the sequence of core tensors. At the posterior sampling stage, we propose a Message-Passing Posterior Sampling mechanism, enabling conditional generation of the entire sequence guided by observations at limited time steps. We validate SDIFT on three physical systems spanning astronomical (supernova explosions, light-year scale), environmental (ocean sound speed fields, kilometer scale), and molecular (organic liquid, millimeter scale) domains, demonstrating significant improvements in both reconstruction accuracy and computational efficiency compared to state-of-the-art approaches.


Axial Neural Networks for Dimension-Free Foundation Models

Neural Information Processing Systems

The advent of foundation models in AI has significantly advanced general-purpose learning, enabling remarkable capabilities in zero-shot inference and in-context learning. However, training such models on physics data, including solutions to partial differential equations (PDEs), poses a unique challenge due to varying dimensionalities across different systems. Traditional approaches either fix a maximum dimension or employ separate encoders for different dimensionalities, resulting in inefficiencies. To address this, we propose a dimension-agnostic neural network architecture, the Axial Neural Network (XNN), inspired by parametersharing structures such as Deep Sets and Graph Neural Networks.


Cross-fluctuation phase transitions reveal sampling dynamics in diffusion models

Neural Information Processing Systems

We analyse how the sampling dynamics of distributions evolve in score-based diffusion models using cross-fluctuations, a centered-moment statistic from statistical physics. Specifically, we show that starting from an unbiased isotropic normal distribution, samples undergo sharp, discrete transitions, eventually forming distinct events of a desired distribution while progressively revealing finer structure. As this process is reversible, these transitions also occur in reverse, where intermediate states progressively merge, tracing a path back to the initial distribution. We demonstrate that these transitions can be detected as discontinuities in nth-order cross-fluctuations. For variance-preserving SDEs, we derive a closed-form for these cross-fluctuations that is efficiently computable for the reverse trajectory. We find that detecting these transitions directly boosts sampling efficiency, accelerates class-conditional and rare-class generation, and improves two zero-shot tasks-image classification and style transfer-without expensive grid search or retraining. We also show that this viewpoint unifies classical coupling and mixing from finite Markov chains with continuous dynamics while extending to stochastic SDEs and non Markovian samplers.


Exploiting Dynamic Sparsity in Einsum

Neural Information Processing Systems

Einsum expressions specify an output tensor in terms of several input tensors. They offer a simple yet expressive abstraction for many computational tasks in artificial intelligence and beyond. However, evaluating einsum expressions poses hard algorithmic problems that depend on the representation of the tensors. Two popular representations are multidimensional arrays and coordinate lists. The latter is a more compact representation for sparse tensors, that is, tensors where a significant proportion of the entries are zero. So far, however, most of the popular einsum implementations use the multidimensional array representation for tensors. Here, we show on a non-trivial example that, when evaluating einsum expressions, coordinate lists can be exponentially more efficient than multidimensional arrays. In practice, however, coordinate lists can also be significantly less efficient than multidimensional arrays, but it is hard to decide from the input tensors whether this will be the case.


CTSketch: Compositional Tensor Sketching for Scalable Neurosymbolic Learning

Neural Information Processing Systems

Many computational tasks benefit from being formulated as the composition of neural networks followed by a discrete symbolic program. The goal of neurosymbolic learning is to train the neural networks using end-to-end input-output labels of the composite. We introduce CTSketch, a novel, scalable neurosymbolic learning algorithm. CTSketch uses two techniques to improve the scalability of neurosymbolic inference: decompose the symbolic program into sub-programs and summarize each sub-program with a sketched tensor. This strategy allows us to approximate the output distribution of the program with simple tensor operations over the input distributions and the sketches. We provide theoretical insight into the maximum approximation error. Furthermore, we evaluate CTSketch on benchmarks from the neurosymbolic learning literature, including some designed for evaluating scalability. Our results show that CTSketch pushes neurosymbolic learning to new scales that were previously unattainable, with neural predictors obtaining high accuracy on tasks with one thousand inputs, despite supervision only on the final output. 2


msf-CNN: Patch-based Multi-Stage Fusion with Convolutional Neural Networks for TinyML

Neural Information Processing Systems

Extremely memory-efficient model architectures are decisive to fit within an MCU's tiny memory budget e.g., 128kB of RAM. However, inference latency must remain small to fit real-time constraints. An approach to tackle this is patchbased fusion, which aims to optimize data flows across neural network layers. In this paper, we introduce msf-CNN, a novel technique that efficiently finds optimal fusion settings for convolutional neural networks (CNNs) by walking through the fusion solution space represented as a directed acyclic graph. Compared to previous work on CNN fusion for MCUs, msf-CNN identifies a wider set of solutions. We published an implementation of msf-CNN running on various microcontrollers (ARM Cortex-M, RISC-V, ESP32). We show that msf-CNN can achieve inference using 50% less RAM compared to the prior art (MCUNetV2 and StreamNet). We thus demonstrate how msf-CNN offers additional flexibility for system designers.


Adversarial Graph Fusion for Incomplete Multi-view Semi-supervised Learning with Tensorial Imputation

Neural Information Processing Systems

View missing remains a significant challenge in graph-based multi-view semisupervised learning, hindering their real-world applications. To address this issue, traditional methods introduce a missing indicator matrix and focus on mining partial structure among existing samples in each view for label propagation (LP). However, we argue that these disregarded missing samples sometimes induce discontinuous local structures, i.e., sub-clusters, breaking the fundamental smoothness assumption in LP. Consequently, such a Sub-Cluster Problem (SCP) would distort graph fusion and degrade classification performance. To alleviate SCP, we propose a novel incomplete multi-view semi-supervised learning method, termed AGF-TI.


Non-Convex Tensor Recovery from Tube-Wise Sensing

Neural Information Processing Systems

In this paper, we propose a novel tube-wise local tensor compressed sensing (CS) model under the tensor product framework, where sensing operators are independently applied to each tube of a third-order tensor. To recover the low-rank ground truth tensor, we minimize a non-convex objective via Burer-Monteiro factorization and solve it using gradient descent (GD) with spectral initialization. We prove that this approach achieves exact recovery with a linear convergence rate. Notably, our method attains provably lower sample complexity than existing TCS methods if the low tubal rank ground truth tensor satisfies the defined incoherence condition. Our proof leverages the leave-one-out technique to show that gradient descent generates iterates implicitly biased towards solutions with bounded incoherence, which ensures contraction of optimization error in consecutive iterates. Empirical results validate the effectiveness of GD in solving the proposed local TCS model.