We repeat this process until the size of the negative set is 5x that of the positive set. The expanded dataset is then provided to the respective ERGO model. Any unobserved pair is treated as negative. Performance is shown in Table S2. TCRs that have more than one positive prediction or have at least one wrong prediction.

The latter usually defines the protein's key function, but cannot

We repeat this process until the size of the negative set is 5x that of the positive set. The expanded dataset is then provided to the respective ERGO model. Any unobserved pair is treated as negative. Performance is shown in Table S2. TCRs that have more than one positive prediction or have at least one wrong prediction.

The latter usually defines the protein's key function, but cannot

We thank the reviewers for their valuable input on how to improve our manuscript. We use our evaluation procedure ( 4) since we will not have ground-truth outcomes. The revision will provide this discussion with relevant citations. We would like to clarify that Theorem 3.1 describes the conditions under which our method is optimal. The RF estimation error dominates the confounding error.

Mobile crowdsensing is evolving beyond traditional human-centric models by integrating heterogeneous entities like unmanned aerial vehicles (UAVs) and unmanned ground vehicles (UGVs). Optimizing task allocation among these diverse agents is critical, particularly in challenging emergency rescue scenarios characterized by complex environments, limited communication, and partial observability. This paper tackles the Heterogeneous-Entity Collaborative-Sensing Task Allocation (HECTA) problem specifically for emergency rescue, considering humans, UAVs, and UGVs. We introduce a novel ``Hard-Cooperative'' policy where UGVs prioritize recharging low-battery UAVs, alongside performing their sensing tasks. The primary objective is maximizing the task completion rate (TCR) under strict time constraints. We rigorously formulate this NP-hard problem as a decentralized partially observable Markov decision process (Dec-POMDP) to effectively handle sequential decision-making under uncertainty. To solve this, we propose HECTA4ER, a novel multi-agent reinforcement learning algorithm built upon a Centralized Training with Decentralized Execution architecture. HECTA4ER incorporates tailored designs, including specialized modules for complex feature extraction, utilization of action-observation history via hidden states, and a mixing network integrating global and local information, specifically addressing the challenges of partial observability. Furthermore, theoretical analysis confirms the algorithm's convergence properties. Extensive simulations demonstrate that HECTA4ER significantly outperforms baseline algorithms, achieving an average 18.42% increase in TCR. Crucially, a real-world case study validates the algorithm's effectiveness and robustness in dynamic sensing scenarios, highlighting its strong potential for practical application in emergency response.

The analysis of high-dimensional timeline data and the identification of outliers and anomalies is critical across diverse domains, including sensor readings, biological and medical data, historical records, and global statistics. However, conventional analysis techniques often struggle with challenges such as high dimensionality, complex distributions, and sparsity. These limitations hinder the ability to extract meaningful insights from complex temporal datasets, making it difficult to identify trending features, outliers, and anomalies effectively. Inspired by surprisability -- a cognitive science concept describing how humans instinctively focus on unexpected deviations - we propose Learning via Surprisability (LvS), a novel approach for transforming high-dimensional timeline data. LvS quantifies and prioritizes anomalies in time-series data by formalizing deviations from expected behavior. LvS bridges cognitive theories of attention with computational methods, enabling the detection of anomalies and shifts in a way that preserves critical context, offering a new lens for interpreting complex datasets. We demonstrate the usefulness of LvS on three high-dimensional timeline use cases: a time series of sensor data, a global dataset of mortality causes over multiple years, and a textual corpus containing over two centuries of State of the Union Addresses by U.S. presidents. Our results show that the LvS transformation enables efficient and interpretable identification of outliers, anomalies, and the most variable features along the timeline.

Given the need to elucidate the mechanisms underlying illnesses and their treatment, as well as the lack of harmonization of acquisition and post-processing protocols among different magnetic resonance system vendors, this work is to determine if metabolite concentrations obtained from different sessions, machine models and even different vendors of 3 T scanners can be highly reproducible and be pooled for diagnostic analysis, which is very valuable for the research of rare diseases. Participants underwent magnetic resonance imaging (MRI) scanning once on two separate days within one week (one session per day, each session including two proton magnetic resonance spectroscopy (1H-MRS) scans with no more than a 5-minute interval between scans (no off-bed activity)) on each machine. were analyzed for reliability of within- and between- sessions using the coefficient of variation (CV) and intraclass correlation coefficient (ICC), and for reproducibility of across the machines using correlation coefficient. As for within- and between- session, all CV values for a group of all the first or second scans of a session, or for a session were almost below 20%, and most of the ICCs for metabolites range from moderate (0.4-0.59) to excellent (0.75-1), indicating high data reliability. When it comes to the reproducibility across the three scanners, all Pearson correlation coefficients across the three machines approached 1 with most around 0.9, and majority demonstrated statistical significance (P<0.01). Additionally, the intra-vendor reproducibility was greater than the inter-vendor ones.

The biophysical interactions between the T cell receptor (TCR) and its ligands determine the specificity of the cellular immune response. However, the immense diversity of receptors and ligands has made it challenging to discover generalizable rules across the distinct binding affinity landscapes created by different ligands. Here, we present an optimization framework for discovering biophysical rules that predict whether TCRs share specificity to a ligand. Applying this framework to TCRs associated with a collection of SARS-CoV-2 peptides we establish how co-specificity depends on the type and position of amino-acid differences between receptors. We also demonstrate that the inferred rules generalize to ligands not seen during training. Our analysis reveals that matching of steric properties between substituted amino acids is important for receptor co-specificity, in contrast with the hydrophobic properties that more prominently determine evolutionary substitutability. We furthermore find that positions not in direct contact with the peptide still significantly impact specificity. These findings highlight the potential for data-driven approaches to uncover the molecular mechanisms underpinning the specificity of adaptive immune responses.