Linear layouts are a graph visualization method that can be used to capture an entry pattern in an adjacency matrix of a given graph. By reordering the node indices of the original adjacency matrix, linear layouts provide knowledge of latent graph structures. Conventional linear layout methods commonly aim to find an optimal reordering solution based on predefined features of a given matrix and loss function. However, prior knowledge of the appropriate features to use or structural patterns in a given adjacency matrix is not always available. In such a case, performing the reordering based on data-driven feature extraction without assuming a specific structure in an adjacency matrix is preferable. Recently, a neural-network-based matrix reordering method called DeepTMR has been proposed to perform this function. However, it is limited to a two-mode reordering (i.e., the rows and columns are reordered separately) and it cannot be applied in the one-mode setting (i.e., the same node order is used for reordering both rows and columns), owing to the characteristics of its model architecture. In this study, we extend DeepTMR and propose a new one-mode linear layout method referred to as AutoLL. We developed two types of neural network models, AutoLL-D and AutoLL-U, for reordering directed and undirected networks, respectively. To perform one-mode reordering, these AutoLL models have specific encoder architectures, which extract node features from an observed adjacency matrix. We conducted both qualitative and quantitative evaluations of the proposed approach, and the experimental results demonstrate its effectiveness.

Matrix reordering is a task to permute the rows and columns of a given observed matrix such that the resulting reordered matrix shows meaningful or interpretable structural patterns. Most existing matrix reordering techniques share the common processes of extracting some feature representations from an observed matrix in a predefined manner, and applying matrix reordering based on it. However, in some practical cases, we do not always have prior knowledge about the structural pattern of an observed matrix. To address this problem, we propose a new matrix reordering method, called deep two-way matrix reordering (DeepTMR), using a neural network model. The trained network can automatically extract nonlinear row/column features from an observed matrix, which can then be used for matrix reordering. Moreover, the proposed DeepTMR provides the denoised mean matrix of a given observed matrix as an output of the trained network. This denoised mean matrix can be used to visualize the global structure of the reordered observed matrix. We demonstrate the effectiveness of the proposed DeepTMR by applying it to both synthetic and practical datasets.