string method
Estimating Reaction Barriers with Deep Reinforcement Learning
Stable states in complex systems correspond to local minima on the associated potential energy surface. Transitions between these local minima govern the dynamics of such systems. Precisely determining the transition pathways in complex and high-dimensional systems is challenging because these transitions are rare events, and isolating the relevant species in experiments is difficult. Most of the time, the system remains near a local minimum, with rare, large fluctuations leading to transitions between minima. The probability of such transitions decreases exponentially with the height of the energy barrier, making the system's dynamics highly sensitive to the calculated energy barriers. This work aims to formulate the problem of finding the minimum energy barrier between two stable states in the system's state space as a cost-minimization problem. We propose solving this problem using reinforcement learning algorithms. The exploratory nature of reinforcement learning agents enables efficient sampling and determination of the minimum energy barrier for transitions.
Computing Transition Pathways for the Study of Rare Events Using Deep Reinforcement Learning
Lin, Bo, Zhong, Yangzheng, Ren, Weiqing
Understanding the transition events between metastable states in complex systems is an important subject in the fields of computational physics, chemistry and biology. The transition pathway plays an important role in characterizing the mechanism underlying the transition, for example, in the study of conformational changes of bio-molecules. In fact, computing the transition pathway is a challenging task for complex and high-dimensional systems. In this work, we formulate the path-finding task as a cost minimization problem over a particular path space. The cost function is adapted from the Freidlin-Wentzell action functional so that it is able to deal with rough potential landscapes. The path-finding problem is then solved using a actor-critic method based on the deep deterministic policy gradient algorithm (DDPG). The method incorporates the potential force of the system in the policy for generating episodes and combines physical properties of the system with the learning process for molecular systems. The exploitation and exploration nature of reinforcement learning enables the method to efficiently sample the transition events and compute the globally optimal transition pathway. We illustrate the effectiveness of the proposed method using three benchmark systems including an extended Mueller system and the Lennard-Jones system of seven particles.
Programming
This article will dive you into the built-in string methods that are used in various text processing tasks in machine learning projects. String methods help to implement sequence operations with the help of these methods. Let's see all the string methods used in the string class of python. First, assign a string to a variable and that variable will be an instance or object of the string class. In this method, the string is return with a first letter capital.