spectrum
Learning Effective Soliton Dynamics from Scattering Data
Minor, Seth, Dukic, Vanja, Bortz, David M.
In such settings, the inverse scattering transform (IST) of Ablowitz, Kaup, Newell, and Segur [2] has enjoyed a rich and successful history, and is now the standard theoretical framework for deriving reduced-order evolution equations for soliton dynamics. Although these derivations are traditionally of an analytical - rather than data-driven - nature, recent work has employed the IST formalism as a tool for experimental data analysis, using the technique to analyze soliton content from empirical measurements [8, 15, 24]. Moreover, recent approaches using alternative parameterization techniques have demonstrated that the learning of reduced-order, interpretable equations of motion for solitons is tenable in a data-driven setting [6, 26, 27]. Despite the success of this recent work, however, little effort has been devoted to developing a data-driven modeling approach based on the IST itself, most likely due to the fact that the framework is fundamentally problem-specific. In this paper, we address the question of whether effective soliton dynamics can be inferred directly from observed scattering data (as opposed to being derived or approximated analytically).
All you need is log
Comparing two probability distributions is a basic building block of statistics and machine learning, and the right family is well understood: the Rényi divergences of order $α\in[0,\infty]$ are the unique family monotone under data processing and additive on independent products. Many problems instead compare more than two distributions at once -- multi-population fairness, multi-prior PAC-Bayes bounds, multi-hypothesis testing -- and the right multi-distribution generalization of the Rényi family has been an open question. We characterize it. Every functional of $W$-tuples of distributions that is monotone under data processing and additive on independent products is a positive integral of multi-way coincidence divergences $C_α(π_1,\dots,π_W) := -\log\int π_1^{α_1}\cdotsπ_W^{α_W}$ (with $\sum_k α_k = 1$) over a parameter space with four strata: the simplex interior; mixed-sign exponent cones (the analogue of Rényi orders $>1$); a tropical boundary at infinity carrying max-divergences; and pairwise Kullback-Leibler edges at the simplex vertices. Each stratum is necessary -- the destination of an explicit data-processing-monotone, product-additive divergence the others cannot reproduce -- and each is a clean limit of simplex-interior atoms. The same family arises from several independent routes -- the structural axioms, Kolmogorov-Nagumo means with Rényi's entropy axiomatics, classical entropy characterizations, multi-hypothesis testing error exponents, and a multi-lottery betting interpretation -- structural evidence that this is the canonical multi-distribution Rényi calculus rather than an artefact of any one axiomatic input. The two-prior case recovers the standard Rényi result; a worked $W=3$ instance, numerical verification, and a conditional extension round out the treatment.
I-BBS: Coordinate-Free Inference of Latent Sub-Manifolds Using Random Distance Matrix Theory
Bogomolny, Bohigas and Schmit (BBS) found that the spectrum of the pairwise distance matrix on N points sampled from a smooth d-dimensional manifold encodes a signature of the underlying geometry. We develop I-BBS (Inference-BBS), a coordinate-free method that identifies a low-dimensional latent sub-manifold embedded in a high-dimensional ambient distance matrix alone, without accessing an ambient high-dimensional vector space. It therefore applies even when that space is only partly observable or undefined. We model the ambient embedding by two classes of generative noise, model-based and model-free. The noise mixes the latent signal with off-manifold components, so the eigenvalues reorganise collectively and the latent geometry cannot be read off eigenvalue by eigenvalue. We recover it instead from two integer-stable signatures that survive the noise: the multiplicity of the top non-Perron multiplet, which fixes $d$, and a parameter-free law for how the multiplet positions shrink as the noise grows. On synthetic spheres $S^1$, $S^2$ and $S^3$ these integer signatures are far more stable under noise than the continuous spectral slope, and a blind test recovers both the manifold and the noise model from a single distance matrix. Applications to neural-network representations and to the dynamic training regime are developed in two companion papers.
Linearization Explains Fine-Tuning in Large Language Models
Parameter-Efficient Fine-Tuning (PEFT) is a popular class of techniques that strive to adapt large models in a scalable and resource-efficient manner. Yet, the mechanisms underlying their training performance and generalization remain underexplored. In this paper, we provide several insights into such fine-tuning through the lens of linearization. Fine-tuned models are often implicitly encouraged to remain close to the pretrained model. By making this explicit, using an ℓ2distance inductive bias in parameter space, we show that fine-tuning dynamics become equivalent to learning with the positive-definite neural tangent kernel (NTK). We specifically analyze how close the fully linear and the linearized finetuning optimizations are, based on the strength of the regularization. This allows us to be pragmatic about how good a model linearization is when fine-tuning large language models (LLMs). When linearization is a good model, our findings reveal a strong correlation between the eigenvalue spectrum of the NTK and the performance of model adaptation. Motivated by this, we give spectral perturbation bounds on the NTK induced by the choice of layers selected for fine-tuning.
Atomic Diffusion Models for Small Molecule Structure Elucidation from NMRSpectra
Nuclear Magnetic Resonance (NMR) spectroscopy is a cornerstone technique for determining the structures of small molecules and is especially critical in the discovery of novel natural products and clinical therapeutics. Yet, interpreting NMR spectra remains a time-consuming, manual process requiring extensive domain expertise. We introduce CHEFNMR (CHemical Elucidation From NMR), an endto-end framework that directly predicts an unknown molecule's structure solely from its 1DNMR spectra and chemical formula. We frame structure elucidation as conditional generation from an atomic diffusion model built on a non-equivariant transformer architecture. To model the complex chemical groups found in natural products, we generated a dataset of simulated 1DNMR spectra for over 111,000 natural products. CHEFNMR predicts the structures of challenging natural product compounds with an unsurpassed accuracy of over 65%. This work takes a significant step toward solving the grand challenge of automating small-molecule structure elucidation and highlights the potential of deep learning in accelerating molecular discovery.
Mitigating Spurious Features in Contrastive Learning with Spectral Regularization
Neural networks generally prefer simple and easy-to-learn features. When these features are spuriously correlated with the labels, the network's performance can suffer, particularly for underrepresented classes or concepts. Self-supervised representation learning methods, such as contrastive learning, are especially prone to this issue, often resulting in worse performance on downstream tasks. We identify a key spectral signature of this failure: early reliance on dominant singular modes of the learned feature matrix. To mitigate this, we propose a novel framework that promotes a uniform eigenspectrum of the feature covariance matrix, encouraging diverse and semantically rich representations. Our method operates in a fully self-supervised setting, without relying on ground-truth labels or any additional information. Empirical results on SimCLR and SimSiam demonstrate consistent gains in robustness and transfer performance, suggesting broad applicability across self-supervised learning paradigms.
Bridging Scales: Spectral Theory Reveals How Local Connectivity Rules Sculpt Global Neural Dynamics in Spatially Extended Networks
The brain's diverse spatiotemporal activity patterns are fundamental to cognition and consciousness, yet how these macroscopic dynamics emerge from microscopic neural circuitry remains a critical challenge. We take a step in this direction by developing a spatially extended neural network model integrated with a spectral theory of its connectivity matrix. Our theory quantitatively demonstrates how local structural parameters, such as E/I neuron projection ranges, connection strengths, and density determine distinct features of the eigenvalue spectrum, specifically outlier eigenvalues and a bulk disk. These spectral signatures, in turn, precisely predict the network's emergent global dynamical regime, encompassing asynchronous states, synchronous states, oscillations, localized activity bumps, traveling waves, and chaos. Motivated by observations of shifting cortical dynamics in mice across arousal states, our framework not only provides a possible explanation for repertoire of behaviors but also offers a principled starting point for inferring underlying effective connectivity changes from macroscopic brain activity. By mechanistically linking neural structure to dynamics, this work advances a principled framework for dissecting how large-scale activity patterns--central to cognition and open questions in consciousness research--arise from, and constrain, local circuitry.
Geometrical fairness in graph neural networks
Pérez-Peralta, Arturo, Benítez-Peña, Sandra, Kolic, Blas, Lillo, Rosa E.
Graph-based learning methods have become increasingly prominent due to their strong performance across diverse applications. Among these, recent frameworks grounded in diffusion processes provide a unifying perspective that extends traditional graph neural network formulations while addressing limitations of standard message-passing mechanisms. Despite these advances, concerns remain regarding the fairness of such models, as they may propagate or amplify biases present in the data. In this work, we introduce a fairness-aware adaptation of graph-based diffusion by modifying the underlying Laplacian operator. Our approach incorporates multiple complementary transformations, including subspace projections, spectral adjustments, and frequency-based filtering, to mitigate bias-related components. Leveraging the intrinsic smoothing properties of graph diffusion, we provide a principled analysis of the resulting behavior and establish theoretical insights into fairness properties. We evaluate the proposed framework on both synthetic and real-world datasets, demonstrating that it achieves competitive performance while improving fairness metrics with limited additional computational cost.