spectral clustering
Cluster LOCO: Feature Importance For Interpreting Clusters
He, Claire M., Allen, Genevera I.
Clustering is widely used for exploratory analysis and scientific discovery, driving insights from market segmentation to biological data analysis, but its outputs can be difficult to interpret, audit, and reproduce as modern datasets become increasingly large and complex. Reliable use of clustering requires understanding which features drive the discovered structure, yet feature-level explanations for clustering remain scarce compared with methods in supervised learning. Furthermore, existing clustering feature importance scores are often tied to specific algorithms and data assumptions. To address these challenges, we propose Cluster LOCO (Leave-One-Covariate-Out), a family of model-agnostic feature importance scores for clustering. Cluster LOCO is built on feature occlusion and clustering generalizability, defined as whether cluster labels learned on one subset of the data can be accurately predicted on held-out samples. For any chosen clustering algorithm, Cluster LOCO quantifies a feature's importance by measuring how much its removal degrades generalizability. We first introduce Cluster LOCO-Split, which relies on data splitting, and then extend it to Cluster LOCO-MP, a minipatch ensemble-based version designed for large-scale data. Across synthetic simulations and an application to cell-type discovery in single-cell transcriptomics, we show that Cluster LOCO more reliably recovers informative features than existing clustering feature importance methods.
Boosting Spectral Clustering on Incomplete Data via Kernel Correction and Affinity Learning
Spectral clustering has gained popularity for clustering non-convex data due to its simplicity and effectiveness. It is essential to construct a similarity graph using a high-quality affinity measure that models the local neighborhood relations among the data samples. However, incomplete data can lead to inaccurate affinity measures, resulting in degraded clustering performance. To address these issues, we propose an imputation-free framework with two novel approaches to improve spectral clustering on incomplete data. Firstly, we introduce a new kernel correction method that enhances the quality of the kernel matrix estimated on incomplete data with a theoretical guarantee, benefiting classical spectral clustering on pre-defined kernels. Secondly, we develop a series of affinity learning methods that equip the selfexpressive framework with โp-norm to construct an intrinsic affinity matrix with an adaptive extension. Our methods outperform existing data imputation and distance calibration techniques on benchmark datasets, offering a promising solution to spectral clustering on incomplete data in various real-world applications.
Boosting Spectral Clustering on Incomplete Data via Kernel Correction and Affinity Learning
Spectral clustering has gained popularity for clustering non-convex data due to its simplicity and effectiveness. It is essential to construct a similarity graph using a high-quality affinity measure that models the local neighborhood relations among the data samples. However, incomplete data can lead to inaccurate affinity measures, resulting in degraded clustering performance. To address these issues, we propose an imputation-free framework with two novel approaches to improve spectral clustering on incomplete data. Firstly, we introduce a new kernel correction method that enhances the quality of the kernel matrix estimated on incomplete data with a theoretical guarantee, benefiting classical spectral clustering on pre-defined kernels. Secondly, we develop a series of affinity learning methods that equip the self-expressive framework with $\ell_p$-norm to construct an intrinsic affinity matrix with an adaptive extension. Our methods outperform existing data imputation and distance calibration techniques on benchmark datasets, offering a promising solution to spectral clustering on incomplete data in various real-world applications.
Fully Bayesian Spectral Clustering and Benchmarking with Uncertainty Quantification for Small Area Estimation
In this work, inspired by machine learning techniques, we propose a new Bayesian model for Small Area Estimation (SAE), the Fay-Herriot model with Spectral Clustering (FH-SC). Unlike traditional approaches, clustering in FH-SC is based on spectral clustering algorithms that utilize external covariates, rather than geographical or administrative criteria. A major advantage of the FH-SC model is its flexibility in integrating existing SAE approaches, with or without clustering random effects. To enable benchmarking, we leverage the theoretical framework of posterior projections for constrained Bayesian inference and derive closed form expressions for the new Rao-Blackwell (RB) estimators of the posterior mean under the FH-SC model. Additionally, we introduce a novel measure of uncertainty for the benchmarked estimator, the Conditional Posterior Mean Square Error (CPMSE), which is generalizable to other Bayesian SAE estimators. We conduct model-based and data-based simulation studies to evaluate the frequentist properties of the CPMSE. The proposed methodology is motivated by a real case study involving the estimation of the proportion of households with internet access in the municipalities of Colombia. Finally, we also illustrate the advantages of FH-SC over existing Bayesian and frequentist approaches through our case study.
An Improved and Generalised Analysis for Spectral Clustering
We revisit the theoretical performances of Spectral Clustering, a classical algorithm for graph partitioning that relies on the eigenvectors of a matrix representation of the graph. Informally, we show that Spectral Clustering works well as long as the smallest eigenvalues appear in groups well separated from the rest of the matrix representation's spectrum. This arises, for example, whenever there exists a hierarchy of clusters at different scales, a regime not captured by previous analyses. Our results are very general and can be applied beyond the traditional graph Laplacian. In particular, we study Hermitian representations of digraphs and show Spectral Clustering can recover partitions where edges between clusters are oriented mostly in the same direction. This has applications in, for example, the analysis of trophic levels in ecological networks. We demonstrate that our results accurately predict the performances of Spectral Clustering on synthetic and real-world data sets.
Advanced spectral clustering for heterogeneous data in credit risk monitoring systems
Han, Lu, Li, Mengyan, Qiang, Jiping, Su, Zhi
Heterogeneous data, which encompass both numerical financial variables and textual records, present substantial challenges for credit monitoring. To address this issue, we propose Advanced Spectral Clustering (ASC), a method that integrates financial and textual similarities through an optimized weight parameter and selects eigenvectors using a novel eigenvalue-silhouette optimization approach. Evaluated on a dataset comprising 1,428 small and medium-sized enterprises (SMEs), ASC achieves a Silhouette score that is 18% higher than that of a single-type data baseline method. Furthermore, the resulting clusters offer actionable insights; for instance, 51% of low-risk firms are found to include the term 'social recruitment' in their textual records. The robustness of ASC is confirmed across multiple clustering algorithms, including k-means, k-medians, and k-medoids, with ฮIntra/Inter < 0.13 and ฮSilhouette Coefficient < 0.02. By bridging spectral clustering theory with heterogeneous data applications, ASC enables the identification of meaningful clusters, such as recruitment-focused SMEs exhibiting a 30% lower default risk, thereby supporting more targeted and effective credit interventions.
Unsupervised Learning: Comparative Analysis of Clustering Techniques on High-Dimensional Data
Baligodugula, Vishnu Vardhan, Amsaad, Fathi
--This paper presents a comprehensive comparative analysis of prominent clustering algorithms--K-means, DB-SCAN, and Spectral Clustering--on high-dimensional datasets. We introduce a novel evaluation framework that assesses clustering performance across multiple dimensionality reduction techniques (PCA, t-SNE, and UMAP) using diverse quantitative metrics. Experiments conducted on MNIST, Fashion-MNIST, and UCI HAR datasets reveal that preprocessing with UMAP consistently improves clustering quality across all algorithms, with Spectral Clustering demonstrating superior performance on complex manifold structures. Our findings show that algorithm selection should be guided by data characteristics, with K-means excelling in computational efficiency, DBSCAN in handling irregular clusters, and Spectral Clustering in capturing complex relationships. This research contributes a systematic approach for evaluating and selecting clustering techniques for high-dimensional data applications.
Multi-View Spectral Clustering for Graphs with Multiple View Structures
Tsitsikas, Yorgos, Papalexakis, Evangelos E.
Despite the fundamental importance of clustering, to this day, much of the relevant research is still based on ambiguous foundations, leading to an unclear understanding of whether or how the various clustering methods are connected with each other. In this work, we provide an additional stepping stone towards resolving such ambiguities by presenting a general clustering framework that subsumes a series of seemingly disparate clustering methods, including various methods belonging to the widely popular spectral clustering framework. In fact, the generality of the proposed framework is additionally capable of shedding light to the largely unexplored area of multi-view graphs where each view may have differently clustered nodes. In turn, we propose GenClus: a method that is simultaneously an instance of this framework and a generalization of spectral clustering, while also being closely related to k-means as well. This results in a principled alternative to the few existing methods studying this special type of multi-view graphs. Then, we conduct in-depth experiments, which demonstrate that GenClus is more computationally efficient than existing methods, while also attaining similar or better clustering performance. Lastly, a qualitative real-world case-study further demonstrates the ability of GenClus to produce meaningful clusterings.
Boosting Spectral Clustering on Incomplete Data via Kernel Correction and Affinity Learning
Spectral clustering has gained popularity for clustering non-convex data due to its simplicity and effectiveness. It is essential to construct a similarity graph using a high-quality affinity measure that models the local neighborhood relations among the data samples. However, incomplete data can lead to inaccurate affinity measures, resulting in degraded clustering performance. To address these issues, we propose an imputation-free framework with two novel approaches to improve spectral clustering on incomplete data. Firstly, we introduce a new kernel correction method that enhances the quality of the kernel matrix estimated on incomplete data with a theoretical guarantee, benefiting classical spectral clustering on pre-defined kernels. Secondly, we develop a series of affinity learning methods that equip the self-expressive framework with \ell_p -norm to construct an intrinsic affinity matrix with an adaptive extension.