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Scientists Used AI to Create 16 New Viruses
The use of AI systems to create viruses opens up new possibilities for combating bacterial resistance. It also raises concerns about the pace at which technology is outstripping regulation. For the first time, an artificial intelligence system has created a series of previously unknown viruses capable of infecting and eliminating certain types of bacteria. This breakthrough opens up new possibilities for combating bacterial resistance . However, it also raises concerns about the potential misuse of this technology to design biological weapons.
Franรงois Pachet on music generation with AI
Dr Franรงois Pachet is an AI researcher and musician, and one of the most influential figures in AI and music. His innovative contributions have defined the field over the past decades through creative systems such as the Continuator, and Flow Machines, among others. After leading the Spotify Creator Technology Research Lab and the Sony Computer Science Lab, he went on to create his own companies: Imagine All The People and Ynosound. In the context of IJCAI2025, he spoke about what deep learning changed, and what still remains wide open. He explains why tools like Suno and Udio--ChatGPT-like platforms for music generation--can produce astonishing results that still feel unsatisfying; why the next step for music generation requires combining sampling with search; and why the most important problems in artistic domains are, by nature, ill-defined--because there is no loss function to determine what is "good". Above all, he defends the importance of researcher autonomy: work on the questions that genuinely fascinate you, even when they fall outside prevailing trends--perhaps especially then. Thank you for joining me for this interview. Could you begin by telling us when was your first IJCAI and a memory related to it? I think the first IJCAI I attended was in Montreal in '95. I was there for a couple of workshops, one of them was about music and AI, and the other one I think was on advisor systems, something like that. And I remember there was a French colleague who was there also, at the time he was doing his PhD. And there was this researcher called Herbert Simon, who is a Nobel Prize pioneer of AI. I remember having chatted a little bit with this French guy who was very bold, and he just went up to Simon, said "Hey," and he started a conversation with him. And I was very impressed by the fact that you could meet those kinds of guys informally in a corridor or something at this conference.
Towards experiment-guided AlphaFold
The AI-based program AlphaFold predicts a protein's 3D structure with remarkable accuracy. However, it tends to reduce heterogeneous structures to a single dominant conformation, or shape, and overlooks experimental conditions that can alter local structure. Researchers at the Institute of Science and Technology Austria (ISTA) and international collaborators have now developed a way to guide AlphaFold with experimental data. Their approach, published in, paves the way for improved future predictive models. Our understanding of molecular structures is considerably influenced by X-ray crystallography--a technique that has served as structural biology's central pillar for many decades.
Online Safety Monitoring for LLMs
Schirmer, Mona, Jazbec, Metod, Timans, Alexander, Naesseth, Christian, Waldron, Maja, Nalisnick, Eric
We deploy a simple into our everyday lives as search engines (Jin et al., 2025; statistical framework based on risk control (Angelopoulos Xiong et al., 2024), coding assistants (Zhao et al., 2023), et al., 2022) that converts any safety signal into a binary and companions (Zhang et al., 2025a). As their applicability grows, so does the potential harm caused by malicious decision rule, and offers statistical guarantees on the false LLM outputs. Despite remarkable performance across a alarm or missed detection rate. The framework is universally applicable to different monitoring purposes and can leverage wide range of tasks, LLMs remain prone to generating halarbitrary proxy signals. Through experiments on mathematlucinated, factually incorrect (Ravichander et al., 2025), or ical problem solving and red teaming conversations, we harmful output (Yu et al., 2025) when deployed.
Adaptive parallel reasoning: the next paradigm in efficient inference scaling
What if a reasoning model could decide when to decompose and parallelize independent subtasks, how many concurrent threads to spawn, and how to coordinate them based on the problem at hand? We provide a detailed analysis of recent progress in the field of parallel reasoning, especially adaptive parallel reasoning. Disclosure: this post is part landscape survey, part perspective on adaptive parallel reasoning. One of the authors (Tony Lian) co-led ThreadWeaver ( Lian et al., 2025), one of the methods discussed below. The authors aim to present each approach on its own terms. Recent progress in LLM reasoning capabilities has been largely driven by inference-time scaling, in addition to data and parameter scaling ( OpenAI et al., 2024; DeepSeek-AI et al., 2025). Models that explicitly output reasoning tokens (through intermediate steps, backtracking, and exploration) now dominate math, coding, and agentic benchmarks.
Hierarchical Variational Kalman Filtering
Li, Shilei, Shi, Dawei, Zheng, Wei, Shi, Ling
Traditional variational Kalman filtering with unknown noise statistics suffers from inconsistent process covariance estimation and slow convergence speed, limiting its practical utility. To address these issues, we introduce a surrogate variable representing the process-noise-free state, which enables explicit modeling and inference of process noise statistics. In addition, we reformulate the conventional coordinate ascent variation inference (CAVI) as a marginalized maximum a posteriori problem, followed by a single-step hyperparameter fitting. This reformulation obviates the need for multiple inner iterations inherent to CAVI and decouples the design of the covariance tracking filters. Consequently, this architecture permits the deployment of higher-order filters for covariance tracking and enables sliding-window hyperparameter estimation. Notably, when this window encompasses all historical data, the covariance tracking estimator intrinsically operates as a zero-phase filter. Numerical simulations validate the theoretical framework, demonstrating the enhanced convergence speed and superior estimation accuracy compared with existing methods.
Improving Patient Subtyping on Longitudinal Data using Representations from Mamba-based Architecture
Mottalib, Md Mozaharul, Beheshti, Rahmatollah
Effective sub-typing (also known as grouping or clustering) of patients using their electronic health record (EHR) data can greatly inform precision medicine efforts. However, subtyping temporal EHR datasets is known to be challenging due to inherent EHR issues, including complexity and irregularity. In this study, we propose a self-supervised Mamba-based model that learns effective EHR representations and enables enhanced patient subtyping. We evaluate the proposed model on public and private real-world EHR datasets to classify the data based on the available labels and subtype patients based on the representations learned from the model. Through an extensive set of experiments, we demonstrate that our model's design choices lead to better performance compared to competitive baseline models for prediction. Moreover, we evaluate several clustering techniques to demonstrate that our findings offer valuable insights into subtyping patients based on temporal records from EHR models\footnote{Our implementations are available at https://github.com/healthylaife/triplet_mamba.
Convergence of Continual Learning in Homogeneous Deep Networks
Schliserman, Matan, Buzaglo, Gon, Evron, Itay, Soudry, Daniel
We characterize weakly regularized continual classification in homogeneous models as sequential projections onto task margin sets. This result generalizes prior analyses restricted to either stationary (single-task) deep models or continual linear models. We show that global convergence generally fails, even for simple models linear in data but nonlinear in parameters. Nevertheless, by leveraging results from nonconvex projection theory, we identify regularity properties of homogeneous deep networks that guarantee local linear convergence under random and cyclic task sequences. Finally, we extend our analysis to continual regression, unifying the framework for homogeneous models.
When are likely answers right? On Sequence Probability and Correctness in LLMs
Zenn, Johannes, Geiping, Jonas
Many decoding methods for large language models can be understood as shifting probability mass toward outputs that are more likely under the model, either locally at the token level or globally at the sequence level. Therefore, their success depends on a fundamental question: when does sequence probability, that is, the conditional probability of a continuation given a prompt, actually align with correctness? In this paper, we set out to quantify this relationship across decoding methods, models, and benchmarks at four levels: across decoding methods, across hyperparameters within a method, across prompt-answer pairs within a dataset, and across repeated responses to the same prompt. We find that higher sequence probability is often predictive of correctness across prompt-answer pairs within a fixed dataset. However, this relationship does not generally transfer to decoding decisions: increasing sequence probability by changing hyperparameters or methods does not reliably improve accuracy. Further, sequence probability is not a good indicator of correctness for responses to the same prompt. These findings clarify when decoding can and cannot be expected to improve correctness, and provide practical guidance for decoding, self-consistency, and verifier-free self-improvement.
Latent Block-Diffusion Temporal Point Processes: A Semi-Autoregressive Framework for Asynchronous Event Sequence Generation
Zhang, Shuai, Chen, Yancheng, Zhou, Chuan, Liu, Yang, Lin, Xixun, Zhao, Xiangyu, Zhu, Jun, Ma, Zhi-Ming
Modeling and sampling from the underlying distribution of asynchronous event sequences are crucial in various real-world applications, including social networks, medical diagnosis, and financial transactions. Existing autoregressive methods suffer from error accumulation during multi-step generation, while non-autoregressive diffusion methods are typically limited to fixed-length output sequences. In this paper, we propose Latent Block-Diffusion Temporal Point Processes (LBDTPP), a novel semi-autoregressive TPP framework that introduces a latent block diffusion mechanism for high-quality and variable-length event sequence generation. The core idea is to define an autoregressive probability distribution over event blocks in latent space and perform Gaussian diffusion within each block. By sequentially generating blocks while simultaneously sampling events in each block, LBDTPP preserves the length flexibility of autoregressive TPPs and inherits the parallel high-quality generation capability of diffusion models. Theoretically, we derive Wasserstein error bounds showing that, under suitable local approximation and prefix-stability assumptions, block-wise generation can reduce error accumulation compared with event-wise autoregressive generation. Extensive experiments on six real-world benchmark datasets demonstrate that LBDTPP outperforms state-of-the-art TPP baselines in both unconditional and conditional generation tasks. Further empirical analyses verify the benefits of latent-space diffusion and block-wise generation, and reveal the trade-off between generation quality and block size. Our code is available at https://github.com/Zh-Shuai/LBDTPP.