Semantic segmentation of electron microscopy (EM) images of biological samples remains a challenge in the life sciences. EM data captures details of biological structures, sometimes with such complexity that even human observers can find it overwhelming. We introduce ϵ-Seg, a method based on hierarchical variational autoencoders (HVAES), employing center-region masking, sparse label contrastive learning (CL), a Gaussian mixture model (GMM) prior, and clustering-free label prediction. Center-region masking and the inpainting loss encourage the model to learn robust and representative embeddings to distinguish the desired classes, even if training labels are sparse (0.05% of the total image data or less). For optimal performance, we employ CL and a GMM prior to shape the latent space of the HVAE such that encoded input patches tend to cluster w.r.t. the semantic classes we wish to distinguish. Finally, instead of clustering latent embeddings for semantic segmentation, we propose a MLP semantic segmentation head to directly predict class labels from latent embeddings. We show empirical results of ϵ-Seg and baseline methods on 2dense EM datasets of biological tissues and demonstrate the applicability of our method also on fluorescence microscopy data. Our results show that ϵ-Seg is capable of achieving competitive sparsely-supervised segmentation results on complex biological image data, even if only limited amounts of training labels are available.

Self-supervised learning (SSL) is a powerful tool in machine learning, but understanding the learned representations and their underlying mechanisms remains a challenge. This paper presents an in-depth empirical analysis of SSL-trained representations, encompassing diverse models, architectures, and hyperparameters. Our study reveals an intriguing aspect of the SSL training process: it inherently facilitates the clustering of samples with respect to semantic labels, which is surprisingly driven by the SSL objective's regularization term. This clustering process not only enhances downstream classification but also compresses the data information. Furthermore, we establish that SSL-trained representations align more closely with semantic classes rather than random classes. Remarkably, we show that learned representations align with semantic classes across various hierarchical levels, and this alignment increases during training and when moving deeper into the network. Our findings provide valuable insights into SSL's representation learning mechanisms and their impact on performance across different sets of classes.

Self-supervised learning (SSL) is a powerful tool in machine learning, but understanding the learned representations and their underlying mechanisms remains a challenge.

We tackle the problem ofnovel class discovery and localization (NCDL). In this setting, we assume a source dataset with supervision for only some object classes.

We introduce Nemotron-Parse-1.1, a lightweight document parsing and OCR model that advances the capabilities of its predecessor, Nemoretriever-Parse-1.0. Nemotron-Parse-1.1 delivers improved capabilities across general OCR, markdown formatting, structured table parsing, and text extraction from pictures, charts, and diagrams. It also supports a longer output sequence length for visually dense documents. As with its predecessor, it extracts bounding boxes of text segments, as well as corresponding semantic classes. Nemotron-Parse-1.1 follows an encoder-decoder architecture with 885M parameters, including a compact 256M-parameter language decoder. It achieves competitive accuracy on public benchmarks making it a strong lightweight OCR solution. We release the model weights publicly on Huggingface, as well as an optimized NIM container, along with a subset of the training data as part of the broader Nemotron-VLM-v2 dataset. Additionally, we release Nemotron-Parse-1.1-TC which operates on a reduced vision token length, offering a 20% speed improvement with minimal quality degradation.

Reinforcement learning (RL) in 3D environments with high-dimensional sensory input poses two major challenges: (1) the high memory consumption induced by memory buffers required to stabilise learning, and (2) the complexity of learning in partially observable Markov Decision Processes (POMDPs). This project addresses these challenges by proposing two novel input representations: SS-only and RGB+SS, both employing semantic segmentation on RGB colour images. Experiments were conducted in deathmatches of ViZDoom, utilizing perfect segmentation results for controlled evaluation. Our results showed that SS-only was able to reduce the memory consumption of memory buffers by at least 66.6%, and up to 98.6% when a vectorisable lossless compression technique with minimal overhead such as run-length encoding is applied. Meanwhile, RGB+SS significantly enhances RL agents' performance with the additional semantic information provided. Furthermore, we explored density-based heatmapping as a tool to visualise RL agents' movement patterns and evaluate their suitability for data collection. A brief comparison with a previous approach highlights how our method overcame common pitfalls in applying semantic segmentation in 3D environments like ViZDoom.

Semantic segmentation of electron microscopy (EM) images of biological samples remains a challenge in the life sciences. EM data captures details of biological structures, sometimes with such complexity that even human observers can find it overwhelming. We introduce ε-Seg, a method based on hierarchical variational autoencoders (HVAEs), employing center-region masking, sparse label contrastive learning (CL), a Gaussian mixture model (GMM) prior, and clustering-free label prediction. Center-region masking and the inpainting loss encourage the model to learn robust and representative embeddings to distinguish the desired classes, even if training labels are sparse (0.05% of the total image data or less). For optimal performance, we employ CL and a GMM prior to shape the latent space of the HVAE such that encoded input patches tend to cluster wrt. the semantic classes we wish to distinguish. Finally, instead of clustering latent embeddings for semantic segmentation, we propose a MLP semantic segmentation head to directly predict class labels from latent embeddings. We show empirical results of ε-Seg and baseline methods on 2 dense EM datasets of biological tissues and demonstrate the applicability of our method also on fluorescence microscopy data. Our results show that ε-Seg is capable of achieving competitive sparsely-supervised segmentation results on complex biological image data, even if only limited amounts of training labels are available.

Digital communication has become the cornerstone of modern interaction, enabling rapid, accessible, and interactive exchanges. However, individuals with lower academic literacy often face significant barriers, exacerbating the "digital divide". In this work, we introduce a novel, universal ideographic metalanguage designed as an innovative communication framework that transcends academic, linguistic, and cultural boundaries. Our approach leverages principles of Neuro-symbolic AI, combining neural-based large language models (LLMs) enriched with world knowledge and symbolic knowledge heuristics grounded in the linguistic theory of Natural Semantic Metalanguage (NSM). This enables the semantic decomposition of complex ideas into simpler, atomic concepts. Adopting a human-centric, collaborative methodology, we engaged over 200 semi-literate participants in defining the problem, selecting ideographs, and validating the system. With over 80\% semantic comprehensibility, an accessible learning curve, and universal adaptability, our system effectively serves underprivileged populations with limited formal education.