rit
Rate-Induced Transitions in Networked Complex Adaptive Systems: Exploring Dynamics and Management Implications Across Ecological, Social, and Socioecological Systems
Vasconcelos, Vítor V., Marquitti, Flávia M. D., Ong, Theresa, McManus, Lisa C., Aguiar, Marcus, Campos, Amanda B., Dutta, Partha S., Jovanelly, Kristen, Junquera, Victoria, Kong, Jude, Krueger, Elisabeth H., Levin, Simon A., Liao, Wenying, Lu, Mingzhen, Mittal, Dhruv, Pascual, Mercedes, Pinheiro, Flávio L., Rocha, Juan, Santos, Fernando P., Sloot, Peter, Chenyang, null, Su, null, Taylor, Benton, Tekwa, Eden, Terpstra, Sjoerd, Tilman, Andrew R., Watson, James R., Yang, Luojun, Yitbarek, Senay, Zhan, Qi
Complex adaptive systems (CASs), from ecosystems to economies, are open systems and inherently dependent on external conditions. While a system can transition from one state to another based on the magnitude of change in external conditions, the rate of change -- irrespective of magnitude -- may also lead to system state changes due to a phenomenon known as a rate-induced transition (RIT). This study presents a novel framework that captures RITs in CASs through a local model and a network extension where each node contributes to the structural adaptability of others. Our findings reveal how RITs occur at a critical environmental change rate, with lower-degree nodes tipping first due to fewer connections and reduced adaptive capacity. High-degree nodes tip later as their adaptability sources (lower-degree nodes) collapse. This pattern persists across various network structures. Our study calls for an extended perspective when managing CASs, emphasizing the need to focus not only on thresholds of external conditions but also the rate at which those conditions change, particularly in the context of the collapse of surrounding systems that contribute to the focal system's resilience. Our analytical method opens a path to designing management policies that mitigate RIT impacts and enhance resilience in ecological, social, and socioecological systems. These policies could include controlling environmental change rates, fostering system adaptability, implementing adaptive management strategies, and building capacity and knowledge exchange. Our study contributes to the understanding of RIT dynamics and informs effective management strategies for complex adaptive systems in the face of rapid environmental change.
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Revision Transformers: Instructing Language Models to Change their Values
Friedrich, Felix, Stammer, Wolfgang, Schramowski, Patrick, Kersting, Kristian
Current transformer language models (LM) are large-scale models with billions of parameters. They have been shown to provide high performances on a variety of tasks but are also prone to shortcut learning and bias. Addressing such incorrect model behavior via parameter adjustments is very costly. This is particularly problematic for updating dynamic concepts, such as moral values, which vary culturally or interpersonally. In this work, we question the current common practice of storing all information in the model parameters and propose the Revision Transformer (RiT) to facilitate easy model updating. The specific combination of a large-scale pre-trained LM that inherently but also diffusely encodes world knowledge with a clear-structured revision engine makes it possible to update the model's knowledge with little effort and the help of user interaction. We exemplify RiT on a moral dataset and simulate user feedback demonstrating strong performance in model revision even with small data. This way, users can easily design a model regarding their preferences, paving the way for more transparent AI models.
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Student researcher aims to reduce bias in automated surveillance
Saranya Dadi, a second-year computer science student at RIT, is conducting research to make machine learning for automated surveillance systems fairer. However, she's not just focusing on making it faster or more efficient, she also wants to make sure machine learning is ethical. "Just because a computer doesn't have feelings and emotions, doesn't mean there's no bias," said Dadi, who is originally from India. "It is crucial that these systems ensure effective performance and accurately safeguard the interests of organizations, without compromising individual privacy." As Dadi points out, computers are increasingly being used to make decisions that affect human lives--from determining who should receive a loan to how to treat sick people.
RIT faculty earns NSF CAREER award to study human behavior using machine learning
A Rochester Institute of Technology professor has earned a prestigious National Science Foundation award to use computers to better understand human behavior and social interaction. Ifeoma Nwogu, an assistant professor of computer science, received an NSF Faculty Early Career Development (CAREER) award and grant for her five-year project. She aims to study human behavior in a new way, by using machine learning techniques to analyze and find patterns in the many signals that individuals display during social interactions. Her work will specifically look at groups working in science, technology, engineering and math (STEM), with the aim of supporting underrepresented groups in STEM. "In a conversation, people are constantly displaying and processing different non-verbal signals, such as how fast someone is talking or the facial expressions they are making," said Nwogu.
Iterative Random Forests to detect predictive and stable high-order interactions
Basu, Sumanta, Kumbier, Karl, Brown, James B., Yu, Bin
Genomics has revolutionized biology, enabling the interrogation of whole transcriptomes, genome-wide binding sites for proteins, and many other molecular processes. However, individual genomic assays measure elements that interact in vivo as components of larger molecular machines. Understanding how these high-order interactions drive gene expression presents a substantial statistical challenge. Building on Random Forests (RF), Random Intersection Trees (RITs), and through extensive, biologically inspired simulations, we developed the iterative Random Forest algorithm (iRF). iRF trains a feature-weighted ensemble of decision trees to detect stable, high-order interactions with same order of computational cost as RF. We demonstrate the utility of iRF for high-order interaction discovery in two prediction problems: enhancer activity in the early Drosophila embryo and alternative splicing of primary transcripts in human derived cell lines. In Drosophila, among the 20 pairwise transcription factor interactions iRF identifies as stable (returned in more than half of bootstrap replicates), 80% have been previously reported as physical interactions. Moreover, novel third-order interactions, e.g. between Zelda (Zld), Giant (Gt), and Twist (Twi), suggest high-order relationships that are candidates for follow-up experiments. In human-derived cells, iRF re-discovered a central role of H3K36me3 in chromatin-mediated splicing regulation, and identified novel 5th and 6th order interactions, indicative of multi-valent nucleosomes with specific roles in splicing regulation. By decoupling the order of interactions from the computational cost of identification, iRF opens new avenues of inquiry into the molecular mechanisms underlying genome biology.
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