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Learning to cluster neuronal function

Neural Information Processing Systems

Deep neural networks trained to predict neural activity from visual input and behaviour have shown great potential to serve as digital twins of the visual cortex. Per-neuron embeddings derived from these models could potentially be used to map the functional landscape or identify cell types. However, state-of-the-art predictive models of mouse V1 do not generate functional embeddings that exhibit clear clustering patterns which would correspond to cell types. This raises the question whether the lack of clustered structure is due to limitations of current models or a true feature of the functional organization of mouse V1. In this work, we introduce DECEMber - Deep Embedding Clustering via Expectation Maximization-based refinement - an explicit inductive bias into predictive models that enhances clustering by adding an auxiliary t-distribution-inspired loss function that enforces structured organization among per-neuron embeddings.


A data and task-constrained mechanistic model of the mouse outer retina shows robustness to contrast variations

Neural Information Processing Systems

Visual processing starts in the outer retina where photoreceptors transform light into electrochemical signals. These signals are modulated by inhibition from horizontal cells and sent to the inner retina via excitatory bipolar cells. The outer retina is thought to play an important role in contrast invariant coding of visual information, but how the different cell types implement this computation together remains incompletely understood. To understand the role of each cell type, we developed a fully-differentiable biophysical model of a circular patch of mouse outer retina. The model includes 200 cone photoreceptors with a realistic phototransduction cascade and ribbon synapses as well as horizontal and bipolar cells, all with celltype specific ion channels. Going beyond decades of work constraining biophysical models of neurons only by experimental data, we used a dual approach, constraining some parameters of the model with available measurements and others by a visual task: (1) We fit the parameters of the cone models to whole cell patch-clamp measurements of photocurrents and two-photon glutamate imaging measurements of synaptic release.


Jumping spiders inspire wildly efficient 3D camera

Popular Science

The arachnids have multiple layers of retinas in each eye. More information Adding us as a Preferred Source in Google by using this link indicates that you would like to see more of our content in Google News results. Breakthroughs, discoveries, and DIY tips sent six days a week. By signing up, you confirm you are 16+, will receive newsletters and promotional content and agree to our Terms of Use and acknowledge the data practices in our Privacy Policy . Technological advancements sometimes feel like a perpetual fight against nature itself, with scientists working out how to do things faster, more powerfully, and more efficiently.


A data and task-constrained mechanistic model of the mouse outer retina shows robustness to contrast variations

Neural Information Processing Systems

Visual processing starts in the outer retina where photoreceptors transform light into electrochemical signals. These signals are modulated by inhibition from horizontal cells and sent to the inner retina via excitatory bipolar cells. The outer retina is thought to play an important role in contrast invariant coding of visual information, but how the different cell types implement this computation together remains incompletely understood. To understand the role of each cell type, we developed a fully-differentiable biophysical model of a circular patch of mouse outer retina. The model includes 200 cone photoreceptors with a realistic phototransduction cascade and ribbon synapses as well as horizontal and bipolar cells, all with cell-type specific ion channels. Going beyond decades of work constraining biophysical models of neurons only by experimental data, we used a dual approach, constraining some parameters of the model with available measurements and others by a visual task: (1) We fit the parameters of the cone models to whole cell patch-clamp measurements of photocurrents and two-photon glutamate imaging measurements of synaptic release.




Why do cats' eyes glow in the dark?

Popular Science

Why do cats' eyes glow in the dark? That eerie glow is actually a pair of built-in night-vision goggles. Cat eyes have even inspired some life-saving tech. Breakthroughs, discoveries, and DIY tips sent six days a week. One foggy night in 1933, a businessman named Percy Shaw was driving home from the pub in Yorkshire, England.