Pattern set mining, which is the task of finding a good set of patterns instead of all patterns, is a fundamental problem in data mining. Many different definitions of what constitutes a good set have been proposed in recent years. In this paper, we consider the reconstruction error as a proxy measure for the goodness of the set, and concentrate on the adjacent problem of how to find a good set efficiently. We propose a method based on bottom-k hashing for efficiently selecting the set and extend the method for the common case where the patterns might only appear in approximate form in the data. Our approach has applications in tiling databases, Boolean matrix factorization, and redescription mining, among others. We show that our hashing-based approach is significantly faster than the standard greedy algorithm while obtaining almost equally good results in both synthetic and real-world data sets.

Non-negative Matrix Factorization (NMF) is an intensively used technique for obtaining parts-based, lower dimensional and non-negative representation. Researchers in biology, medicine, pharmacy and other fields often prefer NMF over other dimensionality reduction approaches (such as PCA) because the non-negativity of the approach naturally fits the characteristics of the domain problem and its results are easier to analyze and understand. Despite these advantages, obtaining exact characterization and interpretation of the NMF's latent factors can still be difficult due to their numerical nature. Rule-based approaches, such as rule mining, conceptual clustering, subgroup discovery and redescription mining, are often considered more interpretable but lack lower-dimensional representation of the data. We present a version of the NMF approach that merges rule-based descriptions with advantages of part-based representation offered by the NMF. Given the numerical input data with non-negative entries and a set of rules with high entity coverage, the approach creates the lower-dimensional non-negative representation of the input data in such a way that its factors are described by the appropriate subset of the input rules. In addition to revealing important attributes for latent factors, their interaction and value ranges, this approach allows performing focused embedding potentially using multiple overlapping target labels.

Deep learning models (DLMs) achieve increasingly high performance both on structured and unstructured data. They significantly extended applicability of machine learning to various domains. Their success in making predictions, detecting patterns and generating new data made significant impact on science and industry. Despite these accomplishments, DLMs are difficult to explain because of their enormous size. In this work, we propose a novel framework for post-hoc explaining and relating DLMs using redescriptions. The framework allows cohort analysis of arbitrary DLMs by identifying statistically significant redescriptions of neuron activations. It allows coupling neurons to a set of target labels or sets of descriptive attributes, relating layers within a single DLM or associating different DLMs. The proposed framework is independent of the artificial neural network architecture and can work with more complex target labels (e.g. multi-label or multi-target scenario). Additionally, it can emulate both pedagogical and decompositional approach to rule extraction. The aforementioned properties of the proposed framework can increase explainability and interpretability of arbitrary DLMs by providing different information compared to existing explainable-AI approaches.

A redescription is a pattern that characterises roughly the same entities in two different ways, and redescription mining is the task of automatically extracting redescriptions from the input dataset, given user-defined constraints. Redescription mining has found applications in various fields of science, such as ecometrics. Ecometrics aims to identify and model the functional relationships between traits of organisms and their environments [5, 7]. For instance, the teeth of large plant-eating mammals are adapted to the food that is available in their environment, which in turn depends on the climatic conditions, potentially allowing one to reason about the climate in the past based on the fossil record. To apply redescription mining in this context, the entities in the dataset represent localities, with two sets of attributes recording respectively the distribution of dental traits among species and the climatic conditions at each locality [11, 19].

The task of redescription mining is concerned with re-describing different subsets of entities contained in a dataset and revealing non-trivial associations between different subsets of attributes, called views. This interesting and challenging task is encountered in different scientific fields, and is addressed by a number of approaches that obtain redescriptions and allow for the exploration and analysis of attribute associations. The main limitation of existing approaches to this task is their inability to use more than two views. Our work alleviates this drawback. We present a memory efficient, extensible multi-view redescription mining framework that can be used to relate multiple, i.e. more than two views, disjoint sets of attributes describing one set of entities. The framework includes: a) the use of random forest of Predictive Clustering trees, with and without random output selection, and random forests of Extra Predictive Clustering trees, b) using Extra Predictive Clustering trees as a main rule generation mechanism in the framework and c) using random view subset projections. We provide multiple performance analyses of the proposed framework and demonstrate its usefulness in increasing the understanding of different machine learning models, which has become a topic of growing importance in machine learning and especially in the field of computer science called explainable data science.

We used redescription mining to find interpretable rules revealing associations between those determinants that provide insights about the Alzheimer's disease (AD). We extended the CLUS-RM redescription mining algorithm to a constraint-based redescription mining (CBRM) setting, which enables several modes of targeted exploration of specific, user-constrained associations. Redescription mining enabled finding specific constructs of clinical and biological attributes that describe many groups of subjects of different size, homogeneity and levels of cognitive impairment. We confirmed some previously known findings. However, in some instances, as with the attributes: testosterone, the imaging attribute Spatial Pattern of Abnormalities for Recognition of Early AD, as well as the levels of leptin and angiopoietin-2 in plasma, we corroborated previously debatable findings or provided additional information about these variables and their association with AD pathogenesis. Applying redescription mining on ADNI data resulted with the discovery of one largely unknown attribute: the Pregnancy-Associated Protein-A (PAPP-A), which we found highly associated with cognitive impairment in AD. Statistically significant correlations (p <= 0.01) were found between PAPP-A and various different clinical tests. The high importance of this finding lies in the fact that PAPP-A is a metalloproteinase, known to cleave insulin-like growth factor binding proteins. Since it also shares similar substrates with A Disintegrin and the Metalloproteinase family of enzymes that act as {\alpha}-secretase to physiologically cleave amyloid precursor protein (APP) in the non-amyloidogenic pathway, it could be directly involved in the metabolism of APP very early during the disease course. Therefore, further studies should investigate the role of PAPP-A in the development of AD more thoroughly.

Redescription mining is a field of knowledge discovery that aims at finding different descriptions of similar subsets of instances in the data. These descriptions are represented as rules inferred from one or more disjoint sets of attributes, called views. As such, they support knowledge discovery process and help domain experts in formulating new hypotheses or constructing new knowledge bases and decision support systems. In contrast to previous approaches that typically create one smaller set of redescriptions satisfying a pre-defined set of constraints, we introduce a framework that creates large and heterogeneous redescription set from which user/expert can extract compact sets of differing properties, according to its own preferences. Construction of large and heterogeneous redescription set relies on CLUS-RM algorithm and a novel, conjunctive refinement procedure that facilitates generation of larger and more accurate redescription sets. The work also introduces the variability of redescription accuracy when missing values are present in the data, which significantly extends applicability of the method. Crucial part of the framework is the redescription set extraction based on heuristic multi-objective optimization procedure that allows user to define importance levels towards one or more redescription quality criteria. We provide both theoretical and empirical comparison of the novel framework against current state of the art redescription mining algorithms and show that it represents more efficient and versatile approach for mining redescriptions from data.

Similarity networks are important abstractions in many information management applications such as recommender systems, corpora analysis, and medical informatics. For instance, by inducing similarity networks between movies rated similarly by users, or between documents containing common terms, and or between clinical trials involving the same themes, we can aim to find the global structure of connectivities underlying the data, and use the network as a basis to make connections between seemingly disparate entities. In the above applications, composing similarities between objects of interest finds uses in serendipitous recommendation, in storytelling, and in clinical diagnosis, respectively. We present an algorithmic framework for traversing similarity paths using the notion of `hammock' paths which are generalization of traditional paths. Our framework is exploratory in nature so that, given starting and ending objects of interest, it explores candidate objects for path following, and heuristics to admissibly estimate the potential for paths to lead to a desired destination. We present three diverse applications: exploring movie similarities in the Netflix dataset, exploring abstract similarities across the PubMed corpus, and exploring description similarities in a database of clinical trials. Experimental results demonstrate the potential of our approach for unstructured knowledge discovery in similarity networks.