primary visual cortex
Neural system identification for large populations separating “what” and “where”
David Klindt, Alexander S. Ecker, Thomas Euler, Matthias Bethge
Neuroscientists classify neurons into different types tha t perform similar computations at different locations in the visual field. Traditio nal methods for neural system identification do not capitalize on this separation o f "what" and "where". Learning deep convolutional feature spaces that are shared among many neurons provides an exciting path forward, but the architectural de sign needs to account for data limitations: While new experimental techniques enabl e recordings from thousands of neurons, experimental time is limited so that one ca n sample only a small fraction of each neuron's response space. Here, we show that a major bottleneck for fitting convolutional neural networks (CNNs) to neural d ata is the estimation of the individual receptive field locations - a problem that h as been scratched only at the surface thus far. W e propose a CNN architecture with a s parse readout layer factorizing the spatial (where) and feature (what) dimensi ons. Our network scales well to thousands of neurons and short recordings and can be t rained end-to-end. W e evaluate this architecture on ground-truth data to explo re the challenges and limitations of CNN-based system identification. Moreover, we show that our network model outperforms current state-of-the art system ide ntification models of mouse primary visual cortex.
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Retrospective for the Dynamic Sensorium Competition for predicting large-scale mouse primary visual cortex activity from videos
Understanding how biological visual systems process information is challenging because of the nonlinear relationship between visual input and neuronal responses. Artificial neural networks allow computational neuroscientists to create predictive models that connect biological and machine vision. Machine learning has benefited tremendously from benchmarks that compare different models on the same task under standardized conditions. However, there was no standardized benchmark to identify state-of-the-art dynamic models of the mouse visual system. To address this gap, we established the SENSORIUM 2023 Benchmark Competition with dynamic input, featuring a new large-scale dataset from the primary visual cortex of ten mice.
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Retrospective for the Dynamic Sensorium Competition for predicting large-scale mouse primary visual cortex activity from videos
Understanding how biological visual systems process information is challenging because of the nonlinear relationship between visual input and neuronal responses. Artificial neural networks allow computational neuroscientists to create predictive models that connect biological and machine vision. Machine learning has benefited tremendously from benchmarks that compare different models on the same task under standardized conditions. However, there was no standardized benchmark to identify state-of-the-art dynamic models of the mouse visual system. To address this gap, we established the SENSORIUM 2023 Benchmark Competition with dynamic input, featuring a new large-scale dataset from the primary visual cortex of ten mice.
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