The Tanimoto coefficient is commonly used to measure the similarity between molecules represented as discrete fingerprints, either as a distance metric or a positive definite kernel.

We derive nearly sharp bounds for the bidirectional GAN (BiGAN) estimation error under the Dudley distance between the latent joint distribution and the data joint distribution with appropriately specified architecture of the neural networks usedinthemodel.

We derive a novel approximation error bound with explicit prefactor for Sobolev-regular functions using deep convolutional neural networks (CNNs). The bound is non-asymptotic in terms of the network depth and filter lengths, in a rather flexible way. For Sobolev-regular functions which can be embedded into the H\older space, the prefactor of our error bound depends on the ambient dimension polynomially instead of exponentially as in most existing results, which is of independent interest. We also establish a new approximation result when the target function is supported on an approximate lower-dimensional manifold. We apply our results to establish non-asymptotic excess risk bounds for classification using CNNs with convex surrogate losses, including the cross-entropy loss, the hinge loss (SVM), the logistic loss, the exponential loss and the least squares loss. We show that the classification methods with CNNs can circumvent the curse of dimensionality if input data is supported on a neighborhood of a low-dimensional manifold.

Quantum machine learning research has expanded rapidly due to potential computational advantages over classical methods. Angle encoding has emerged as a popular choice as feature map (FM) for embedding classical data into quantum models due to its simplicity and natural generation of truncated Fourier series, providing universal function approximation capabilities. Efficient FMs within quantum circuits can exploit exponential scaling of Fourier frequencies, with multi-dimensional inputs introducing additional exponential growth through mixed-frequency terms. Despite this promising expressive capability, practical implementation faces significant challenges. Through controlled experiments with white-box target functions, we demonstrate that training failures can occur even when all relevant frequencies are theoretically accessible. We illustrate how two primary known causes lead to unsuccessful optimization: insufficient trainable parameters relative to the model's frequency content, and limitations imposed by the ansatz's dynamic lie algebra dimension, but also uncover an additional parameter burden: the necessity of controlling non-unique frequencies within the model. To address this, we propose near-zero weight initialization to suppress unnecessary duplicate frequencies. For target functions with a priori frequency knowledge, we introduce frequency selection as a practical solution that reduces parameter requirements and mitigates the exponential growth that would otherwise render problems intractable due to parameter insufficiency. Our frequency selection approach achieved near-optimal performance (median $R^2 \approx 0.95$) with 78\% of the parameters needed by the best standard approach in 10 randomly chosen target functions.

We derive a novel approximation error bound with explicit prefactor for Sobolev-regular functions using deep convolutional neural networks (CNNs). The bound is non-asymptotic in terms of the network depth and filter lengths, in a rather flexible way. For Sobolev-regular functions which can be embedded into the H\"older space, the prefactor of our error bound depends on the ambient dimension polynomially instead of exponentially as in most existing results, which is of independent interest. We also establish a new approximation result when the target function is supported on an approximate lower-dimensional manifold. We apply our results to establish non-asymptotic excess risk bounds for classification using CNNs with convex surrogate losses, including the cross-entropy loss, the hinge loss (SVM), the logistic loss, the exponential loss and the least squares loss.

Continuous normalizing flows (CNFs) are a generative method for learning probability distributions, which is based on ordinary differential equations. This method has shown remarkable empirical success across various applications, including large-scale image synthesis, protein structure prediction, and molecule generation. In this work, we study the theoretical properties of CNFs with linear interpolation in learning probability distributions from a finite random sample, using a flow matching objective function. We establish non-asymptotic error bounds for the distribution estimator based on CNFs, in terms of the Wasserstein-2 distance. The key assumption in our analysis is that the target distribution satisfies one of the following three conditions: it either has a bounded support, is strongly log-concave, or is a finite or infinite mixture of Gaussian distributions. We present a convergence analysis framework that encompasses the error due to velocity estimation, the discretization error, and the early stopping error. A key step in our analysis involves establishing the regularity properties of the velocity field and its estimator for CNFs constructed with linear interpolation. This necessitates the development of uniform error bounds with Lipschitz regularity control of deep ReLU networks that approximate the Lipschitz function class, which could be of independent interest. Our nonparametric convergence analysis offers theoretical guarantees for using CNFs to learn probability distributions from a finite random sample.

We obtain asymptotically sharp error estimates for the consistency error of the Target Measure Diffusion map (TMDmap) (Banisch et al. 2020), a variant of diffusion maps featuring importance sampling and hence allowing input data drawn from an arbitrary density. The derived error estimates include the bias error and the variance error. The resulting convergence rates are consistent with the approximation theory of graph Laplacians. The key novelty of our results lies in the explicit quantification of all the prefactors on leading-order terms. We also prove an error estimate for solutions of Dirichlet BVPs obtained using TMDmap, showing that the solution error is controlled by consistency error. We use these results to study an important application of TMDmap in the analysis of rare events in systems governed by overdamped Langevin dynamics using the framework of transition path theory (TPT). The cornerstone ingredient of TPT is the solution of the committor problem, a boundary value problem for the backward Kolmogorov PDE. Remarkably, we find that the TMDmap algorithm is particularly suited as a meshless solver to the committor problem due to the cancellation of several error terms in the prefactor formula. Furthermore, significant improvements in bias and variance errors occur when using a quasi-uniform sampling density. Our numerical experiments show that these improvements in accuracy are realizable in practice when using $\delta$-nets as spatially uniform inputs to the TMDmap algorithm.

The Tanimoto coefficient is commonly used to measure the similarity between molecules represented as discrete fingerprints, either as a distance metric or a positive definite kernel. While many kernel methods can be accelerated using random feature approximations, at present there is a lack of such approximations for the Tanimoto kernel. In this paper we propose two kinds of novel random features to allow this kernel to scale to large datasets, and in the process discover a novel extension of the kernel to real-valued vectors. We theoretically characterize these random features, and provide error bounds on the spectral norm of the Gram matrix. Experimentally, we show that these random features are effective at approximating the Tanimoto coefficient of real-world datasets and are useful for molecular property prediction and optimization tasks.

In this paper, we present large deviation theory that characterizes the exponential estimate for rare events of stochastic dynamical systems in the limit of weak noise. We aim to consider next-to-leading-order approximation for more accurate calculation of mean exit time via computing large deviation prefactors with the research efforts of machine learning. More specifically, we design a neural network framework to compute quasipotential, most probable paths and prefactors based on the orthogonal decomposition of vector field. We corroborate the higher effectiveness and accuracy of our algorithm with a practical example. Numerical experiments demonstrate its powerful function in exploring internal mechanism of rare events triggered by weak random fluctuations.