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 physiology


Integrated Pipeline for Coronary Angiography With Automated Lesion Profiling, Virtual Stenting, and 100-Vessel FFR Validation

arXiv.org Artificial Intelligence

Coronary angiography is the main tool for assessing coronary artery disease, but visual grading of stenosis is variable and only moderately related to ischaemia. Wire based fractional flow reserve (FFR) improves lesion selection but is not used systematically. Angiography derived indices such as quantitative flow ratio (QFR) offer wire free physiology, yet many tools are workflow intensive and separate from automated anatomy analysis and virtual PCI planning. We developed AngioAI-QFR, an end to end angiography only pipeline combining deep learning stenosis detection, lumen segmentation, centreline and diameter extraction, per millimetre Relative Flow Capacity profiling, and virtual stenting with automatic recomputation of angiography derived QFR. The system was evaluated in 100 consecutive vessels with invasive FFR as reference. Primary endpoints were agreement with FFR (correlation, mean absolute error) and diagnostic performance for FFR <= 0.80. On held out frames, stenosis detection achieved precision 0.97 and lumen segmentation Dice 0.78. Across 100 vessels, AngioAI-QFR correlated strongly with FFR (r = 0.89, MAE 0.045). The AUC for detecting FFR <= 0.80 was 0.93, with sensitivity 0.88 and specificity 0.86. The pipeline completed fully automatically in 93 percent of vessels, with median time to result 41 s. RFC profiling distinguished focal from diffuse capacity loss, and virtual stenting predicted larger QFR gain in focal than in diffuse disease. AngioAI-QFR provides a practical, near real time pipeline that unifies computer vision, functional profiling, and virtual PCI with automated angiography derived physiology.


From Lab to Wrist: Bridging Metabolic Monitoring and Consumer Wearables for Heart Rate and Oxygen Consumption Modeling

arXiv.org Artificial Intelligence

Understanding physiological responses during running is critical for performance optimization, tailored training prescriptions, and athlete health management. We introduce a comprehensive framework -- what we believe to be the first capable of predicting instantaneous oxygen consumption (VO$_{2}$) trajectories exclusively from consumer-grade wearable data. Our approach employs two complementary physiological models: (1) accurate modeling of heart rate (HR) dynamics via a physiologically constrained ordinary differential equation (ODE) and neural Kalman filter, trained on over 3 million HR observations, achieving 1-second interval predictions with mean absolute errors as low as 2.81\,bpm (correlation 0.87); and (2) leveraging the principles of precise HR modeling, a novel VO$_{2}$ prediction architecture requiring only the initial second of VO$_{2}$ data for calibration, enabling robust, sequence-to-sequence metabolic demand estimation. Despite relying solely on smartwatch and chest-strap data, our method achieves mean absolute percentage errors of approximately 13\%, effectively capturing rapid physiological transitions and steady-state conditions across diverse running intensities. Our synchronized dataset, complemented by blood lactate measurements, further lays the foundation for future noninvasive metabolic zone identification. By embedding physiological constraints within modern machine learning, this framework democratizes advanced metabolic monitoring, bridging laboratory-grade accuracy and everyday accessibility, thus empowering both elite athletes and recreational fitness enthusiasts.


Neuromuscular Modeling for Locomotion with Wearable Assistive Robots -- A primer

arXiv.org Artificial Intelligence

Wearable assistive robots (WR) for the lower extremity are extensively documented in literature. Various interfaces have been designed to control these devices during gait and balance activities. However, achieving seamless and intuitive control requires accurate modeling of the human neuromusculoskeletal (NMSK) system. Such modeling enables WR to anticipate user intentions and determine the necessary joint assistance. Despite the existence of controllers interfacing with the NMSK system, robust and generalizable techniques across different tasks remain scarce. Designing these novel controllers necessitates the combined expertise of neurophysiologists, who understand the physiology of movement initiation and generation, and biomechatronic engineers, who design and control devices that assist movement. This paper aims to bridge the gaps between these fields by presenting a primer on key concepts and the current state of the science in each area. We present three main sections: the neuromechanics of locomotion, neuromechanical models of movement, and existing neuromechanical controllers used in WR. Through these sections, we provide a comprehensive overview of seminal studies in the field, facilitating collaboration between neurophysiologists and biomechatronic engineers for future advances in wearable robotics for locomotion.


Surprise! Using Physiological Stress for Allostatic Regulation Under the Active Inference Framework [Pre-Print]

arXiv.org Artificial Intelligence

Note: This manuscript has been accepted for publication at a conference in 2024 and will be published under the same title. The version in this pre-print will undergo minor edits and thus does not represent the final version of this work. Abstract-- Allostasis proposes that long-term viability of a living system is achieved through anticipatory adjustments of its physiology and behaviour: emphasising physiological and affective stress as an adaptive state of adaptation that minimizes long-term prediction errors. More recently, the active inference framework (AIF) has also sought to explain action and long-term adaptation through the minimization of future errors (free energy), through the learning of statistical contingencies of the world, offering a formalism for allostatic regulation. We suggest that framing prediction errors through the lens of biological hormonal dynamics proposed by allostasis offers a way to integrate these two models together in a biologically-plausible manner. In this paper, we describe our initial work in developing a model that grounds prediction errors (surprisal) into the secretion of a physiological stress hormone (cortisol) acting as an adaptive, allostatic mediator on a homeostatically-controlled physiology. We evaluate this using a computational model in simulations using an active inference agent endowed with an artificial physiology, regulated through homeostatic and allostatic control in a stochastic environment. Our results find that allostatic functions of cortisol (stress), secreted as a function of prediction errors, provide adaptive advantages to the agent's longterm physiological regulation. We argue that the coupling of information-theoretic prediction errors to low-level, biological hormonal dynamics of stress can provide a computationally efficient model to long-term regulation for embodied intelligent systems. A. Background In both biological and artificial systems, mechanisms of adaptation are critical to long-term stability and viability in dynamic, unpredictable environments.


Space Physiology and Technology: Musculoskeletal Adaptations, Countermeasures, and the Opportunity for Wearable Robotics

arXiv.org Artificial Intelligence

Space poses significant challenges for human physiology, leading to physiological adaptations in response to an environment vastly different from Earth. While these adaptations can be beneficial, they may not fully counteract the adverse impact of space-related stressors. A comprehensive understanding of these physiological adaptations is needed to devise effective countermeasures to support human life in space. This review focuses on the impact of the environment in space on the musculoskeletal system. It highlights the complex interplay between bone and muscle adaptation, the underlying physiological mechanisms, and their implications on astronaut health. Furthermore, the review delves into the deployed and current advances in countermeasures and proposes, as a perspective for future developments, wearable sensing and robotic technologies, such as exoskeletons, as a fitting alternative.


An aVLSI Cricket Ear Model

Neural Information Processing Systems

Female crickets can locate males by phonotaxis to the mating song they produce. The behaviour and underlying physiology has been studied in some depth showing that the cricket auditory system solves this complex problem in a unique manner. We present an analogue very large scale integrated (aVLSI) circuit model of this process and show that results from testing the circuit agree with simulation and what is known from the behaviour and physiology of the cricket auditory system. The aVLSI circuitry is now being extended to use on a robot along with previously modelled neural circuitry to better understand the complete sensorimotor pathway. Understanding how insects carry out complex sensorimotor tasks can help in the design of simple sensory and robotic systems. Often insect sensors have evolved into intricate filters matched to extract highly specific data from the environment which solves a particular problem directly with little or no need for further processing [1].


The Introspective Agent: Interdependence of Strategy, Physiology, and Sensing for Embodied Agents

arXiv.org Artificial Intelligence

The last few years have witnessed substantial progress in the field of embodied AI where artificial agents, mirroring biological counterparts, are now able to learn from interaction to accomplish complex tasks. Despite this success, biological organisms still hold one large advantage over these simulated agents: adaptation. While both living and simulated agents make decisions to achieve goals (strategy), biological organisms have evolved to understand their environment (sensing) and respond to it (physiology). The net gain of these factors depends on the environment, and organisms have adapted accordingly. For example, in a low vision aquatic environment some fish have evolved specific neurons which offer a predictable, but incredibly rapid, strategy to escape from predators. Mammals have lost these reactive systems, but they have a much larger fields of view and brain circuitry capable of understanding many future possibilities. While traditional embodied agents manipulate an environment to best achieve a goal, we argue for an introspective agent, which considers its own abilities in the context of its environment. We show that different environments yield vastly different optimal designs, and increasing long-term planning is often far less beneficial than other improvements, such as increased physical ability. We present these findings to broaden the definition of improvement in embodied AI passed increasingly complex models. Just as in nature, we hope to reframe strategy as one tool, among many, to succeed in an environment. Code is available at: https://github.com/sarahpratt/introspective.


Artificial Intelligence: The Transcendence Effect

#artificialintelligence

In last month's column, "Artificial intelligence: I think therefore I am?," I felt I only scratched the surface of what we understand to be artificial intelligence (AI) and, in this month's post, I want to expand my thoughts a little further. So, last month, I suggested that what we understand today as "AI" is nothing more than clever programming and smart technology and, I dare say, that's largely true, despite others suggesting otherwise. We don't have thinking machines, since software engineers have programmed our technology to behave in a pre-determined manner, along with predefined behaviors and outcomes. You may recall, over a bottle of red, I presented the philosophical conjecture provided by René Descartes and the Scottish philosopher George Campbell's work surrounding their rationale regarding the separation of the mind and body.


Total Recall: Human vs Machine Learning

#artificialintelligence

I'm Nerissa Kelly and I implement change initiatives and whole brain training for the future of work. If you or your company is in need of my help, I'm happy to assist. You can reach me here.


Automated Polysomnography Analysis for Detection of Non-Apneic and Non-Hypopneic Arousals using Feature Engineering and a Bidirectional LSTM Network

arXiv.org Machine Learning

Objective: The aim of this study is to develop an automated classification algorithm for polysomnography (PSG) recordings to detect non-apneic and non-hypopneic arousals. Our particular focus is on detecting the respiratory effort-related arousals (RERAs) which are very subtle respiratory events that do not meet the criteria for apnea or hypopnea, and are more challenging to detect. Methods: The proposed algorithm is based on a bidirectional long short-term memory (BiLSTM) classifier and 465 multi-domain features, extracted from multimodal clinical time series. The features consist of a set of physiology-inspired features (n = 75), obtained by multiple steps of feature selection and expert analysis, and a set of physiology-agnostic features (n = 390), derived from scattering transform. Results: The proposed algorithm is validated on the 2018 PhysioNet challenge dataset. The overall performance in terms of the area under the precision-recall curve (AUPRC) is 0.50 on the hidden test dataset. This result is tied for the second-best score during the follow-up and official phases of the 2018 PhysioNet challenge. Conclusions: The results demonstrate that it is possible to automatically detect subtle non-apneic/non-hypopneic arousal events from PSG recordings. Significance: Automatic detection of subtle respiratory events such as RERAs together with other non-apneic/non-hypopneic arousals will allow detailed annotations of large PSG databases. This contributes to a better retrospective analysis of sleep data, which may also improve the quality of treatment.