pathogen
CIA accused of secret bioweapon experiments linked to major outbreak in its own people
ROTC students at Old Dominion subdued and killed ISIS-linked gunman who left one dead, two wounded after shouting'Allahu Akbar' and opened fire Horrifying next twist in the Alexander brothers case: MAUREEN CALLAHAN exposes an unthinkable perversion that's been hiding in plain sight Kentucky mother and daughter turn down $26.5MILLION to sell their farms to secretive tech giant that wants to build data center there Hollywood icon who starred in Psycho after Hitchcock dubbed her'my new Grace Kelly' looks incredible at 95 Kylie Jenner's total humiliation in Hollywood: Derogatory rumor leaves her boyfriend's peers'laughing at her' behind her back Tucker Carlson erupts at Trump adviser as she hurls'SLANDER' claim linking him to synagogue shooting Ben Affleck'scores $600m deal' with Netflix to sell his AI film start-up Long hair over 45 is ageing and try-hard. I've finally cut mine off. Alexander brothers' alleged HIGH SCHOOL rape video: Classmates speak out on sickening footage... as creepy unseen photos are exposed Heartbreaking video shows very elderly DoorDash driver shuffle down customer's driveway with coffee order because he is too poor to retire Amber Valletta, 52, was a '90s Vogue model who made movies with Sandra Bullock and Kate Hudson, see her now Model Cindy Crawford, 60, mocked for her'out of touch' morning routine: 'Nothing about this is normal' A biochemist has claimed to have found evidence that the modern Lyme outbreak in the US could have been the result of CIA bioweapon experiments. Dr Robert Malone, who helped lay the groundwork for mRNA vaccine technology, made the explosive allegations this week after analyzing declassified government documents, historical records from Cold War biological weapons programs and scientific research on tick-borne diseases . Malone highlighted experiments in the 1960s that allegedly released more than 282,000 radioactive ticks in Virginia and open-air tick research at Plum Island, a federal laboratory located near the Connecticut community where Lyme disease was first identified.
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Ancient poop from Mexico's 'Cave of the Dead Children' teems with parasites
Breakthroughs, discoveries, and DIY tips sent every weekday. It's a really big deal when fossilized feces survive the ravages of time. These hardened pieces of excrement open up a window into what animals ate thousands of years ago and even what may have made them sick . Humans are not exempt from this, with dried human feces indicating we have always loved cheese and beer and that our microbiome has evolved over thousands of years. DNA recovered from 1,000-year-old dried feces indicates that intestinal infections from pinworm or Shingella may have plagued ancient people living in present day northern Mexico's Rio Zape Valley.
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Why do bats spread so many diseases? They're evolutionary marvels.
Environment Animals Wildlife Bats Why do bats spread so many diseases? Survival of the fittest doesn't always mean smartest, fastest, or strongest. Breakthroughs, discoveries, and DIY tips sent every weekday. There are way more bats than you might think. Second only to rodents, bats make up around a fifth of all mammals, with over 1,500 species of winged nightflyers .
A deep reinforcement learning platform for antibiotic discovery
Cao, Hanqun, Torres, Marcelo D. T., Zhang, Jingjie, Gao, Zijun, Wu, Fang, Gu, Chunbin, Leskovec, Jure, Choi, Yejin, de la Fuente-Nunez, Cesar, Chen, Guangyong, Heng, Pheng-Ann
Antimicrobial resistance (AMR) is projected to cause up to 10 million deaths annually by 2050, underscoring the urgent need for new antibiotics. Here we present ApexAmphion, a deep-learning framework for de novo design of antibiotics that couples a 6.4-billion-parameter protein language model with reinforcement learning. The model is first fine-tuned on curated peptide data to capture antimicrobial sequence regularities, then optimised with proximal policy optimization against a composite reward that combines predictions from a learned minimum inhibitory concentration (MIC) classifier with differentiable physicochemical objectives. In vitro evaluation of 100 designed peptides showed low MIC values (nanomolar range in some cases) for all candidates (100% hit rate). Moreover, 99 our of 100 compounds exhibited broad-spectrum antimicrobial activity against at least two clinically relevant bacteria. The lead molecules killed bacteria primarily by potently targeting the cytoplasmic membrane. By unifying generation, scoring and multi-objective optimization with deep reinforcement learning in a single pipeline, our approach rapidly produces diverse, potent candidates, offering a scalable route to peptide antibiotics and a platform for iterative steering toward potency and developability within hours.
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Predicting and generating antibiotics against future pathogens with ApexOracle
Leng, Tianang, Wan, Fangping, Torres, Marcelo Der Torossian, de la Fuente-Nunez, Cesar
Antimicrobial resistance (AMR) is escalating and outpacing current antibiotic development. Thus, discovering antibiotics effective against emerging pathogens is becoming increasingly critical. However, existing approaches cannot rapidly identify effective molecules against novel pathogens or emerging drug-resistant strains. Here, we introduce ApexOracle, an artificial intelligence (AI) model that both predicts the antibacterial potency of existing compounds and designs de novo molecules active against strains it has never encountered. Departing from models that rely solely on molecular features, ApexOracle incorporates pathogen-specific context through the integration of molecular features captured via a foundational discrete diffusion language model and a dual-embedding framework that combines genomic- and literature-derived strain representations. Across diverse bacterial species and chemical modalities, ApexOracle consistently outperformed state-of-the-art approaches in activity prediction and demonstrated reliable transferability to novel pathogens with little or no antimicrobial data. Its unified representation-generation architecture further enables the in silico creation of "new-to-nature" molecules with high predicted efficacy against priority threats. By pairing rapid activity prediction with targeted molecular generation, ApexOracle offers a scalable strategy for countering AMR and preparing for future infectious-disease outbreaks.
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5 terrifying flashpoints that could ignite global war
Fox News senior national correspondent Rich Edson has the latest on a Chinese pair charged with smuggling a'devastating' pathogen to the U.S. on'The Story.' By all appearances, the world is edging perilously close to the brink of a catastrophic global conflict. In just the past few days, five deeply troubling developments have emerged -- each significant on its own -- but taken together, they form a pattern too urgent to dismiss. Viewed in context, these events expose a rapidly deteriorating international order, where diplomacy is failing, deterrence is weakening, and the risk of multi-theater war is rising sharply. First, Ukraine's audacious drone strike deep inside Russian territory -- reportedly destroying or damaging a significant share of Russia's strategic bomber fleet -- bears the hallmarks of Western involvement.
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Plants can now tell you when they're stressed out
Anyone who has tried to keep porch plants or a home garden alive through seasonal changes knows it's a task easier said than done. Abrupt temperature changes--like cold snaps--and prolonged periods of drought can stress plants, disrupting their normal biochemistry. If not addressed quickly enough, those stresses can eventually kill the plant. Disappointed growers often only see the tell-tale signs (like shriveling or browning leaves) after it's too late. But a new plant-wearable device developed by researchers at the American Chemical Society could offer an early warning system. The wearable, detailed this week in the journal ACS Sensors, comes in the form of an electromagnetic sensor attached directly to plant leaves.
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Review GIDE -- Restaurant Review Gastrointestinal Illness Detection and Extraction with Large Language Models
Laurence, Timothy, Harris, Joshua, Loman, Leo, Douglas, Amy, Chan, Yung-Wai, Hounsome, Luke, Larkin, Lesley, Borowitz, Michael
Foodborne gastrointestinal (GI) illness is a common cause of ill health in the UK. However, many cases do not interact with the healthcare system, posing significant challenges for traditional surveillance methods. The growth of publicly available online restaurant reviews and advancements in large language models (LLMs) present potential opportunities to extend disease surveillance by identifying public reports of GI illness. In this study, we introduce a novel annotation schema, developed with experts in GI illness, applied to the Yelp Open Dataset of reviews. Our annotations extend beyond binary disease detection, to include detailed extraction of information on symptoms and foods. We evaluate the performance of open-weight LLMs across these three tasks: GI illness detection, symptom extraction, and food extraction. We compare this performance to RoBERTa-based classification models fine-tuned specifically for these tasks. Our results show that using prompt-based approaches, LLMs achieve micro-F1 scores of over 90% for all three of our tasks. Using prompting alone, we achieve micro-F1 scores that exceed those of smaller fine-tuned models. We further demonstrate the robustness of LLMs in GI illness detection across three bias-focused experiments. Our results suggest that publicly available review text and LLMs offer substantial potential for public health surveillance of GI illness by enabling highly effective extraction of key information. While LLMs appear to exhibit minimal bias in processing, the inherent limitations of restaurant review data highlight the need for cautious interpretation of results.
Optimizing Gene-Based Testing for Antibiotic Resistance Prediction
Hagerman, David, Johnning, Anna, Naeem, Roman, Kahl, Fredrik, Kristiansson, Erik, Svensson, Lennart
Antibiotic Resistance (AR) is a critical global health challenge that necessitates the development of cost-effective, efficient, and accurate diagnostic tools. Given the genetic basis of AR, techniques such as Polymerase Chain Reaction (PCR) that target specific resistance genes offer a promising approach for predictive diagnostics using a limited set of key genes. This study introduces GenoARM, a novel framework that integrates reinforcement learning (RL) with transformer-based models to optimize the selection of PCR gene tests and improve AR predictions, leveraging observed metadata for improved accuracy. In our evaluation, we developed several high-performing baselines and compared them using publicly available datasets derived from real-world bacterial samples representing multiple clinically relevant pathogens. The results show that all evaluated methods achieve strong and reliable performance when metadata is not utilized. When metadata is introduced and the number of selected genes increases, GenoARM demonstrates superior performance due to its capacity to approximate rewards for unseen and sparse combinations. Overall, our framework represents a major advancement in optimizing diagnostic tools for AR in clinical settings.
Pan-infection Foundation Framework Enables Multiple Pathogen Prediction
Zhang, Lingrui, Wu, Haonan, Jin, Nana, Zheng, Chenqing, Xie, Jize, Cai, Qitai, Wang, Jun, Cao, Qin, Zheng, Xubin, Wang, Jiankun, Cheng, Lixin
Host-response-based diagnostics can improve the accuracy of diagnosing bacterial and viral infections, thereby reducing inappropriate antibiotic prescriptions. However, the existing cohorts with limited sample size and coarse infections types are unable to support the exploration of an accurate and generalizable diagnostic model. Here, we curate the largest infection host-response transcriptome data, including 11,247 samples across 89 blood transcriptome datasets from 13 countries and 21 platforms. We build a diagnostic model for pathogen prediction starting from a pan-infection model as foundation (AUC = 0.97) based on the pan-infection dataset. Then, we utilize knowledge distillation to efficiently transfer the insights from this "teacher" model to four lightweight pathogen "student" models, i.e., staphylococcal infection (AUC = 0.99), streptococcal infection (AUC = 0.94), HIV infection (AUC = 0.93), and RSV infection (AUC = 0.94), as well as a sepsis "student" model (AUC = 0.99). The proposed knowledge distillation framework not only facilitates the diagnosis of pathogens using pan-infection data, but also enables an across-disease study from pan-infection to sepsis. Moreover, the framework enables high-degree lightweight design of diagnostic models, which is expected to be adaptively deployed in clinical settings.
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