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VIRIS: Simulating indoor airborne transmission combining architectural design and people movement

Xue, Yidan, Jabi, Wassim, Woolley, Thomas E., Kaouri, Katerina

arXiv.org Artificial Intelligence

A Viral Infection Risk Indoor Simulator (VIRIS) has been developed to quickly assess and compare mitigations for airborne disease spread. This agent-based simulator combines people movement in an indoor space, viral transmission modelling and detailed architectural design, and it is powered by topologicpy, an open-source Python library. VIRIS generates very fast predictions of the viral concentration and the spatiotemporal infection risk for individuals as they move through a given space. The simulator is validated with data from a courtroom superspreader event. A sensitivity study for unknown parameter values is also performed. We compare several non-pharmaceutical interventions (NPIs) issued in UK government guidance, for two indoor settings: a care home and a supermarket. Additionally, we have developed the user-friendly VIRIS web app that allows quick exploration of diverse scenarios of interest and visualisation, allowing policymakers, architects and space managers to easily design or assess infection risk in an indoor space.


The interaction of transmission intensity, mortality, and the economy: a retrospective analysis of the COVID-19 pandemic

Morgenstern, Christian, Laydon, Daniel J., Whittaker, Charles, Mishra, Swapnil, Haw, David, Bhatt, Samir, Ferguson, Neil M.

arXiv.org Artificial Intelligence

The COVID-19 pandemic has caused over 6.4 million registered deaths to date and has had a profound impact on economic activity. Here, we study the interaction of transmission, mortality, and the economy during the SARS-CoV-2 pandemic from January 2020 to December 2022 across 25 European countries. We adopt a Bayesian Mixed Effects model with auto-regressive terms. We find that increases in disease transmission intensity decreases Gross domestic product (GDP) and increases daily excess deaths, with a longer lasting impact on excess deaths in comparison to GDP, which recovers more rapidly. Broadly, our results reinforce the intuitive phenomenon that significant economic activity arises from diverse person-to-person interactions. We report on the effectiveness of non-pharmaceutical interventions (NPIs) on transmission intensity, excess deaths, and changes in GDP, and resulting implications for policy makers. Our results highlight a complex cost-benefit trade off from individual NPIs. For example, banning international travel increases GDP and reduces excess deaths. We consider country random effects and their associations with excess changes in GDP and excess deaths. For example, more developed countries in Europe typically had more cautious approaches to the COVID-19 pandemic, prioritising healthcare, and excess deaths over economic performance. Long term economic impairments are not fully captured by our model, as well as long term disease effects (Long Covid). Our results highlight that the impact of disease on a country is complex and multifaceted, and simple heuristic conclusions to extract the best outcome from the economy and disease burden are challenging.


Neural Network Augmented Compartmental Pandemic Models

Kummer, Lorenz, Sidak, Kevin

arXiv.org Artificial Intelligence

Compartmental models are a tool commonly used in epidemiology for the mathematical modelling of the spread of infectious diseases, with their most popular representative being the Susceptible-Infected-Removed (SIR) model and its derivatives. However, current SIR models are bounded in their capabilities to model government policies in the form of non-pharmaceutical interventions (NPIs) and weather effects and offer limited predictive power. More capable alternatives such as agent based models (ABMs) are computationally expensive and require specialized hardware. We introduce a neural network augmented SIR model that can be run on commodity hardware, takes NPIs and weather effects into account and offers improved predictive power as well as counterfactual analysis capabilities. We demonstrate our models improvement of the state-of-the-art modeling COVID-19 in Austria during the 03.2020 to 03.2021 period and provide an outlook for the future up to 01.2024.


A general framework for optimising cost-effectiveness of pandemic response under partial intervention measures

Nguyen, Quang Dang, Prokopenko, Mikhail

arXiv.org Artificial Intelligence

The COVID-19 pandemic created enormous public health and socioeconomic challenges. The health effects of vaccination and non-pharmaceutical interventions (NPIs) were often contrasted with significant social and economic costs. We describe a general framework aimed to derive adaptive cost-effective interventions, adequate for both recent and emerging pandemic threats. We also quantify the net health benefits and propose a reinforcement learning approach to optimise adaptive NPIs. The approach utilises an agent-based model simulating pandemic responses in Australia, and accounts for a heterogeneous population with variable levels of compliance fluctuating over time and across individuals. Our analysis shows that a significant net health benefit may be attained by adaptive NPIs formed by partial social distancing measures, coupled with moderate levels of the society's willingness to pay for health gains (health losses averted). We demonstrate that a socially acceptable balance between health effects and incurred economic costs is achievable over a long term, despite possible early setbacks.